Publications by authors named "Gustavo C Cerqueira"

34Publications

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database.

PLoS One 2019 2;14(10):e0223364. Epub 2019 Oct 2.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.

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March 2020

Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent.

PLoS Genet 2017 Oct 27;13(10):e1007065. Epub 2017 Oct 27.

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.

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October 2017

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

Authors:
Ronald P de Vries Robert Riley Ad Wiebenga Guillermo Aguilar-Osorio Sotiris Amillis Cristiane Akemi Uchima Gregor Anderluh Mojtaba Asadollahi Marion Askin Kerrie Barry Evy Battaglia Özgür Bayram Tiziano Benocci Susanna A Braus-Stromeyer Camila Caldana David Cánovas Gustavo C Cerqueira Fusheng Chen Wanping Chen Cindy Choi Alicia Clum Renato Augusto Corrêa Dos Santos André Ricardo de Lima Damásio George Diallinas Tamás Emri Erzsébet Fekete Michel Flipphi Susanne Freyberg Antonia Gallo Christos Gournas Rob Habgood Matthieu Hainaut María Laura Harispe Bernard Henrissat Kristiina S Hildén Ryan Hope Abeer Hossain Eugenia Karabika Levente Karaffa Zsolt Karányi Nada Kraševec Alan Kuo Harald Kusch Kurt LaButti Ellen L Lagendijk Alla Lapidus Anthony Levasseur Erika Lindquist Anna Lipzen Antonio F Logrieco Andrew MacCabe Miia R Mäkelä Iran Malavazi Petter Melin Vera Meyer Natalia Mielnichuk Márton Miskei Ákos P Molnár Giuseppina Mulé Chew Yee Ngan Margarita Orejas Erzsébet Orosz Jean Paul Ouedraogo Karin M Overkamp Hee-Soo Park Giancarlo Perrone Francois Piumi Peter J Punt Arthur F J Ram Ana Ramón Stefan Rauscher Eric Record Diego Mauricio Riaño-Pachón Vincent Robert Julian Röhrig Roberto Ruller Asaf Salamov Nadhira S Salih Rob A Samson Erzsébet Sándor Manuel Sanguinetti Tabea Schütze Kristina Sepčić Ekaterina Shelest Gavin Sherlock Vicky Sophianopoulou Fabio M Squina Hui Sun Antonia Susca Richard B Todd Adrian Tsang Shiela E Unkles Nathalie van de Wiele Diana van Rossen-Uffink Juliana Velasco de Castro Oliveira Tammi C Vesth Jaap Visser Jae-Hyuk Yu Miaomiao Zhou Mikael R Andersen David B Archer Scott E Baker Isabelle Benoit Axel A Brakhage Gerhard H Braus Reinhard Fischer Jens C Frisvad Gustavo H Goldman Jos Houbraken Berl Oakley István Pócsi Claudio Scazzocchio Bernhard Seiboth Patricia A vanKuyk Jennifer Wortman Paul S Dyer Igor V Grigoriev

Genome Biol 2017 02 14;18(1):28. Epub 2017 Feb 14.

US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.

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February 2017

Discovery of McrA, a master regulator of Aspergillus secondary metabolism.

Mol Microbiol 2017 01 14;103(2):347-365. Epub 2016 Nov 14.

Department of Molecular Biosciences, University of Kansas, 1200 Sunnyside Avenue, Lawrence, Kansas, 66045, USA.

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January 2017

Complete genome sequences and analysis of the Fusobacterium nucleatum subspecies animalis 7-1 bacteriophage ɸFunu1 and ɸFunu2.

Anaerobe 2016 Apr 3;38:125-129. Epub 2015 Nov 3.

Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Road East, Guelph, Ontario, N1G 2W1, Canada.

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April 2016

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.

Nucleic Acids Res 2014 Jan 4;42(Database issue):D705-10. Epub 2013 Nov 4.

Broad Institute of Harvard and MIT, 7 Cambridge Center, Cambridge, MA 02141, USA Department of Genetics, Stanford University Medical School, Stanford, CA 94305-5120, USA and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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January 2014

The genome of Anopheles darlingi, the main neotropical malaria vector.

Authors:
Osvaldo Marinotti Gustavo C Cerqueira Luiz Gonzaga Paula de Almeida Maria Inês Tiraboschi Ferro Elgion Lucio da Silva Loreto Arnaldo Zaha Santuza M R Teixeira Adam R Wespiser Alexandre Almeida E Silva Aline Daiane Schlindwein Ana Carolina Landim Pacheco Artur Luiz da Costa da Silva Brenton R Graveley Brian P Walenz Bruna de Araujo Lima Carlos Alexandre Gomes Ribeiro Carlos Gustavo Nunes-Silva Carlos Roberto de Carvalho Célia Maria de Almeida Soares Claudia Beatriz Afonso de Menezes Cleverson Matiolli Daniel Caffrey Demetrius Antonio M Araújo Diana Magalhães de Oliveira Douglas Golenbock Edmundo Carlos Grisard Fabiana Fantinatti-Garboggini Fabíola Marques de Carvalho Fernando Gomes Barcellos Francisco Prosdocimi Gemma May Gilson Martins de Azevedo Junior Giselle Moura Guimarães Gustavo Henrique Goldman Itácio Q M Padilha Jacqueline da Silva Batista Jesus Aparecido Ferro José M C Ribeiro Juliana Lopes Rangel Fietto Karina Maia Dabbas Louise Cerdeira Lucymara Fassarella Agnez-Lima Marcelo Brocchi Marcos Oliveira de Carvalho Marcus de Melo Teixeira Maria de Mascena Diniz Maia Maria Helena S Goldman Maria Paula Cruz Schneider Maria Sueli Soares Felipe Mariangela Hungria Marisa Fabiana Nicolás Maristela Pereira Martín Alejandro Montes Maurício E Cantão Michel Vincentz Miriam Silva Rafael Neal Silverman Patrícia Hermes Stoco Rangel Celso Souza Renato Vicentini Ricardo Tostes Gazzinelli Rogério de Oliveira Neves Rosane Silva Spartaco Astolfi-Filho Talles Eduardo Ferreira Maciel Turán P Urményi Wanderli Pedro Tadei Erney Plessmann Camargo Ana Tereza Ribeiro de Vasconcelos

Nucleic Acids Res 2013 Aug 12;41(15):7387-400. Epub 2013 Jun 12.

Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA, Institute of Technology, Broad Institute of Harvard and Massachusetts, Cambridge, MA 02141, USA, Laboratório de Bioinformática do Laboratório Nacional de Computação Científica, Petrópolis, RJ 25651-075, Brasil, Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal, UNESP -Universidade Estadual Paulista, SP 14884-900, Brasil, Departamento de Biologia, Universidade Federal de Santa Maria, Santa Maria, RS 97105-900, Brasil, Departamento de Biologia Molecular e Biotecnologia, Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS 91501-970, Brasil, Departamento de Bioquímica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG 31270901, Brasil, Department of Medicine, University of Massachusetts Medical School, Worcester, MA 01655, USA, Laboratório de Entomologia Médica IPEPATRO/FIOCRUZ, Porto Velho, RO 76812-245, Brasil, Departamento de Microbiologia, Imunologia e Parasitologia, Universidade Federal de Santa Catarina, Florianópolis, SC 88040-900, Brasil, Centro de Ciências da Saúde, Universidade Estadual do Ceará, Fortaleza, CE 62042-280, Brasil, Departamento de Ciências Biológicas, Campus Senador Helvídio Nunes de Barros, Universidade Federal do Piauí, Picos, PI 60740-000, Brasil, Departamento de Genética, Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA 66075-900, Brasil, Department of Genetics and Developmental Biology, University of Connecticut Health Center, Farmington, CT 06030, USA, Informatics, The J. Craig Venter Institute, Medical Center Drive, Rockville, MD 20850, USA, Departamento de Genética, Evolução e Bioagentes, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, SP 13083-862, Brasil, Departamento de Genética e Melhoramento, Universidade Federal de Viçosa, MG 36570-000, Brasil, Centro de Apoio Mul

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August 2013

Transcript expression analysis of putative Trypanosoma brucei GPI-anchored surface proteins during development in the tsetse and mammalian hosts.

PLoS Negl Trop Dis 2012 19;6(6):e1708. Epub 2012 Jun 19.

Division of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, USA.

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September 2012

DIVERGENOME: a bioinformatics platform to assist population genetics and genetic epidemiology studies.

Genet Epidemiol 2012 May 16;36(4):360-7. Epub 2012 Apr 16.

Departamento de Biologia Geral, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Pampulha, Belo Horizonte, Brazil.

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May 2012

Plasmodium falciparum merozoite surface protein 1 blocks the proinflammatory protein S100P.

Proc Natl Acad Sci U S A 2012 Apr 19;109(14):5429-34. Epub 2012 Mar 19.

Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD 20852, USA.

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April 2012