Gregory W Gundersen

Gregory W Gundersen

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Gregory W Gundersen

Gregory W Gundersen

Publications by authors named "Gregory W Gundersen"

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eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.

Nucleic Acids Res 2018 07;46(W1):W171-W179

DBD2K-LINCS Data Coordination and Integration Center; Knowledge Management Center for the Illuminating the Druggable Genome; Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029, USA.

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http://dx.doi.org/10.1093/nar/gky458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030863PMC
July 2018

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins.

Database (Oxford) 2016 3;2016. Epub 2016 Jul 3.

Department of Pharmacology and Systems Therapeutics, Department of Genetics and Genomic Sciences, BD2K-LINCS Data Coordination and Integration Center (DCIC), Mount Sinai's Knowledge Management Center for Illuminating the Druggable Genome (KMC-IDG), Icahn School of Medicine at Mount Sinai, New York, NY, USA

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http://dx.doi.org/10.1093/database/baw100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4930834PMC
November 2017

Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data.

Sci Data 2017 10 10;4:170151. Epub 2017 Oct 10.

Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, BD2K-LINCS Data Coordination and Integration Center (DCIC), Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA.

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http://www.nature.com/articles/sdata2017151
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http://dx.doi.org/10.1038/sdata.2017.151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634325PMC
October 2017

GEN3VA: aggregation and analysis of gene expression signatures from related studies.

BMC Bioinformatics 2016 Nov 15;17(1):461. Epub 2016 Nov 15.

Department of Pharmacological Sciences, One Gustave L. Levy Place, Box 1603, New York, NY, 10029, USA.

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http://dx.doi.org/10.1186/s12859-016-1321-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111283PMC
November 2016

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.

Nucleic Acids Res 2016 07 3;44(W1):W90-7. Epub 2016 May 3.

Department of Pharmacology and Systems Therapeutics, BD2K-LINCS Data Coordination and Integration Center, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place Box 1215, New York, NY 10029, USA

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http://dx.doi.org/10.1093/nar/gkw377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987924PMC
July 2016

GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.

Bioinformatics 2015 Sep 13;31(18):3060-2. Epub 2015 May 13.

Department of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA, BD2K-LINCS Data Coordination and Integration Center, Mount Sinai Knowledge Management Center for Illuminating the Druggable Genome and 367 Airport Sector, Goiania, Goias 74075, Brazil Department of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA, BD2K-LINCS Data Coordination and Integration Center, Mount Sinai Knowledge Management Center for Illuminating the Druggable Genome and 367 Airport Sector, Goiania, Goias 74075, Brazil Department of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA, BD2K-LINCS Data Coordination and Integration Center, Mount Sinai Knowledge Management Center for Illuminating the Druggable Genome and 367 Airport Sector, Goiania, Goias 74075, Brazil.

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http://dx.doi.org/10.1093/bioinformatics/btv297DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4607730PMC
September 2015