Publications by authors named "Gregory P Harhay"

44Publications

Rapid estimation of Salmonella enterica contamination level in ground beef - Application of the time-to-positivity method using a combination of molecular detection and direct plating.

Food Microbiol 2021 Feb 10;93:103615. Epub 2020 Aug 10.

United States Department of Agriculture, Roman L. Hruska U.S. Meat Animal Research Center, Meat Safety and Quality Research Unit, Clay Center, NE, 68933, USA.

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http://dx.doi.org/10.1016/j.fm.2020.103615DOI Listing
February 2021

Resolving Bovine viral diarrhea virus subtypes from persistently infected U.S. beef calves with complete genome sequence.

J Vet Diagn Invest 2016 Sep 7;28(5):519-28. Epub 2016 Jul 7.

U.S. Meat Animal Research Center, Clay Center, NE (Workman, Heaton, Harhay, Smith, Chitko-McKown)Great Plains Veterinary Educational Center, School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Clay Center, NE (Grotelueschen)Cattle Empire LLC, Satanta, KS (Sjeklocha)Nebraska Veterinary Diagnostic Center, School of Veterinary Medicine and Biomedical Sciences (Brodersen), University of Nebraska-Lincoln, Lincoln, NEDepartment of Animal Science (Petersen), University of Nebraska-Lincoln, Lincoln, NE.

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http://dx.doi.org/10.1177/1040638716654943DOI Listing
September 2016

Evolutionary characterization of pig interferon-inducible transmembrane gene family and member expression dynamics in tracheobronchial lymph nodes of pigs infected with swine respiratory disease viruses.

Vet Immunol Immunopathol 2014 Jun 3;159(3-4):180-91. Epub 2014 Mar 3.

USDA, Agricultural Research Service, National Animal Disease Center, Virus and Prion Research Unit, 1920 Dayton Avenue, Ames, IA 50010, USA.

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http://dx.doi.org/10.1016/j.vetimm.2014.02.015DOI Listing
June 2014

Next-generation sequencing of the porcine skeletal muscle transcriptome for computational prediction of microRNA gene targets.

PLoS One 2012 27;7(7):e42039. Epub 2012 Jul 27.

Genetics and Breeding Research Unit, United States Department of Agriculture/Agricultural Research Service/USDA/Meat Animal Research Center, Nebraska, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042039PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3407067PMC
January 2013

Reduced lentivirus susceptibility in sheep with TMEM154 mutations.

PLoS Genet 2012 Jan 26;8(1):e1002467. Epub 2012 Jan 26.

U.S. Meat Animal Research Center, Agriculture Research Service, United States Department of Agriculture, Clay Center, Nebraska, USA.

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http://dx.doi.org/10.1371/journal.pgen.1002467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266874PMC
January 2012

Bacterial community analysis of beef cattle feedlots reveals that pen surface is distinct from feces.

Foodborne Pathog Dis 2011 May 9;8(5):647-9. Epub 2011 Jan 9.

U.S. Meat Animal Research Center, Agricultural Research Service, U.S. Department of Agriculture, Clay Center, Nebraska, USA.

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http://www.liebertpub.com/doi/10.1089/fpd.2010.0774
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http://dx.doi.org/10.1089/fpd.2010.0774DOI Listing
May 2011

Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach.

J Microbiol Methods 2011 Feb 16;84(2):278-82. Epub 2010 Dec 16.

USDA, ARS, Agroecosystem Mangagement Research Unit, UNL-East Campus, Lincoln, NE 68983, USA.

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http://dx.doi.org/10.1016/j.mimet.2010.12.008DOI Listing
February 2011

In-depth global analysis of transcript abundance levels in porcine alveolar macrophages following infection with porcine reproductive and respiratory syndrome virus.

Adv Virol 2010 12;2010:864181. Epub 2011 Jan 12.

USDA, Agricultural Research Service, National Animal Disease Center, Virus and Prion Research Unit, 1920 Dayton Ave, Ames, IA 50010, USA.

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http://dx.doi.org/10.1155/2010/864181DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3275998PMC
August 2012

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

A sequencing strategy for identifying variation throughout the prion gene of BSE-affected cattle.

BMC Res Notes 2008 Jun 23;1:32. Epub 2008 Jun 23.

United States Department of Agriculture (USDA), Agricultural Research Service (ARS), US Meat Animal Research Center (USMARC), Clay Center, NE 68933, USA.

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http://dx.doi.org/10.1186/1756-0500-1-32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2525647PMC
June 2008

Prion gene haplotypes of U.S. cattle.

BMC Genet 2006 Nov 8;7:51. Epub 2006 Nov 8.

United States Department of Agriculture, Agricultural Research Service, U,S, Meat Animal Research Center, Clay Center, NE 68933, USA.

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http://dx.doi.org/10.1186/1471-2156-7-51DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1654178PMC
November 2006

Linkage mapping bovine EST-based SNP.

BMC Genomics 2005 May 19;6:74. Epub 2005 May 19.

US Meat Animal Research Center, Agricultural Research Service, US Department of Agriculture, Clay Center, Nebraska 68933-0166, USA.

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http://dx.doi.org/10.1186/1471-2164-6-74DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1166549PMC
May 2005

Use of bovine single nucleotide polymorphism markers to verify sample tracking in beef processing.

J Am Vet Med Assoc 2005 Apr;226(8):1311-4

USDA, Agricultural Research Service, US Meat Animal Research Center, State Spur 18D, PO Box 166, Clay Center, NE 68933-0166, USA.

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http://dx.doi.org/10.2460/javma.2005.226.1311DOI Listing
April 2005

Positional candidate gene selection from livestock EST databases using Gene Ontology.

Bioinformatics 2003 Jan;19(2):249-55

US Department of Agriculture, ARS, Roman L. Hruska US Meat Animal Research Center, Production Systems, Clay Center, NE 68933, USA.

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http://dx.doi.org/10.1093/bioinformatics/19.2.249DOI Listing
January 2003

Selection and use of SNP markers for animal identification and paternity analysis in U.S. beef cattle.

Mamm Genome 2002 May;13(5):272-81

USDA, ARS, U.S. Meat Animal Research Center (MARC), State Spur 18D, P.O. Box 166, Clay Center, Nebraska 68933-0166, USA.

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http://dx.doi.org/10.1007/s00335-001-2146-3DOI Listing
May 2002