Gregory D Jenkins

Gregory D Jenkins

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Gregory D Jenkins

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Genome-wide analyses as part of the international FTLD-TDP whole-genome sequencing consortium reveals novel disease risk factors and increases support for immune dysfunction in FTLD.

Authors:
Cyril Pottier Yingxue Ren Ralph B Perkerson Matt Baker Gregory D Jenkins Marka van Blitterswijk Mariely DeJesus-Hernandez Jeroen G J van Rooij Melissa E Murray Elizabeth Christopher Shannon K McDonnell Zachary Fogarty Anthony Batzler Shulan Tian Cristina T Vicente Billie Matchett Anna M Karydas Ging-Yuek Robin Hsiung Harro Seelaar Merel O Mol Elizabeth C Finger Caroline Graff Linn Öijerstedt Manuela Neumann Peter Heutink Matthis Synofzik Carlo Wilke Johannes Prudlo Patrizia Rizzu Javier Simon-Sanchez Dieter Edbauer Sigrun Roeber Janine Diehl-Schmid Bret M Evers Andrew King M Marsel Mesulam Sandra Weintraub Changiz Geula Kevin F Bieniek Leonard Petrucelli Geoffrey L Ahern Eric M Reiman Bryan K Woodruff Richard J Caselli Edward D Huey Martin R Farlow Jordan Grafman Simon Mead Lea T Grinberg Salvatore Spina Murray Grossman David J Irwin Edward B Lee EunRan Suh Julie Snowden David Mann Nilufer Ertekin-Taner Ryan J Uitti Zbigniew K Wszolek Keith A Josephs Joseph E Parisi David S Knopman Ronald C Petersen John R Hodges Olivier Piguet Ethan G Geier Jennifer S Yokoyama Robert A Rissman Ekaterina Rogaeva Julia Keith Lorne Zinman Maria Carmela Tartaglia Nigel J Cairns Carlos Cruchaga Bernardino Ghetti Julia Kofler Oscar L Lopez Thomas G Beach Thomas Arzberger Jochen Herms Lawrence S Honig Jean Paul Vonsattel Glenda M Halliday John B Kwok Charles L White Marla Gearing Jonathan Glass Sara Rollinson Stuart Pickering-Brown Jonathan D Rohrer John Q Trojanowski Vivianna Van Deerlin Eileen H Bigio Claire Troakes Safa Al-Sarraj Yan Asmann Bruce L Miller Neill R Graff-Radford Bradley F Boeve William W Seeley Ian R A Mackenzie John C van Swieten Dennis W Dickson Joanna M Biernacka Rosa Rademakers

Acta Neuropathol 2019 Jun 9;137(6):879-899. Epub 2019 Feb 9.

Department of Neuroscience, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL, 32224, USA.

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http://link.springer.com/10.1007/s00401-019-01962-9
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http://dx.doi.org/10.1007/s00401-019-01962-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6533145PMC
June 2019

Gut microbiome meta-analysis reveals dysbiosis is independent of body mass index in predicting risk of obesity-associated CRC.

BMJ Open Gastroenterol 2019 28;6(1):e000247. Epub 2019 Feb 28.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, New York, USA.

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http://dx.doi.org/10.1136/bmjgast-2018-000247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6398873PMC
February 2019

Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.

Authors:
Cyril Pottier Xiaolai Zhou Ralph B Perkerson Matt Baker Gregory D Jenkins Daniel J Serie Roberta Ghidoni Luisa Benussi Giuliano Binetti Adolfo López de Munain Miren Zulaica Fermin Moreno Isabelle Le Ber Florence Pasquier Didier Hannequin Raquel Sánchez-Valle Anna Antonell Albert Lladó Tammee M Parsons NiCole A Finch Elizabeth C Finger Carol F Lippa Edward D Huey Manuela Neumann Peter Heutink Matthis Synofzik Carlo Wilke Robert A Rissman Jaroslaw Slawek Emilia Sitek Peter Johannsen Jørgen E Nielsen Yingxue Ren Marka van Blitterswijk Mariely DeJesus-Hernandez Elizabeth Christopher Melissa E Murray Kevin F Bieniek Bret M Evers Camilla Ferrari Sara Rollinson Anna Richardson Elio Scarpini Giorgio G Fumagalli Alessandro Padovani John Hardy Parastoo Momeni Raffaele Ferrari Francesca Frangipane Raffaele Maletta Maria Anfossi Maura Gallo Leonard Petrucelli EunRan Suh Oscar L Lopez Tsz H Wong Jeroen G J van Rooij Harro Seelaar Simon Mead Richard J Caselli Eric M Reiman Marwan Noel Sabbagh Mads Kjolby Anders Nykjaer Anna M Karydas Adam L Boxer Lea T Grinberg Jordan Grafman Salvatore Spina Adrian Oblak M-Marsel Mesulam Sandra Weintraub Changiz Geula John R Hodges Olivier Piguet William S Brooks David J Irwin John Q Trojanowski Edward B Lee Keith A Josephs Joseph E Parisi Nilüfer Ertekin-Taner David S Knopman Benedetta Nacmias Irene Piaceri Silvia Bagnoli Sandro Sorbi Marla Gearing Jonathan Glass Thomas G Beach Sandra E Black Mario Masellis Ekaterina Rogaeva Jean-Paul Vonsattel Lawrence S Honig Julia Kofler Amalia C Bruni Julie Snowden David Mann Stuart Pickering-Brown Janine Diehl-Schmid Juliane Winkelmann Daniela Galimberti Caroline Graff Linn Öijerstedt Claire Troakes Safa Al-Sarraj Carlos Cruchaga Nigel J Cairns Jonathan D Rohrer Glenda M Halliday John B Kwok John C van Swieten Charles L White Bernardino Ghetti Jill R Murell Ian R A Mackenzie Ging-Yuek R Hsiung Barbara Borroni Giacomina Rossi Fabrizio Tagliavini Zbigniew K Wszolek Ronald C Petersen Eileen H Bigio Murray Grossman Vivianna M Van Deerlin William W Seeley Bruce L Miller Neill R Graff-Radford Bradley F Boeve Dennis W Dickson Joanna M Biernacka Rosa Rademakers

Lancet Neurol 2018 06 30;17(6):548-558. Epub 2018 Apr 30.

Department of Neuroscience, Mayo Clinic, Jacksonville, FL, USA. Electronic address:

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http://dx.doi.org/10.1016/S1474-4422(18)30126-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237181PMC
June 2018

Differential roles of ERRFI1 in EGFR and AKT pathway regulation affect cancer proliferation.

EMBO Rep 2018 03 15;19(3). Epub 2018 Jan 15.

Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN, USA

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http://dx.doi.org/10.15252/embr.201744767DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5835844PMC
March 2018

Comparison of Whole-Genome Sequencing Methods for Analysis of Three Methicillin-Resistant Staphylococcus aureus Outbreaks.

J Clin Microbiol 2017 06 12;55(6):1946-1953. Epub 2017 Apr 12.

Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota, USA

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http://dx.doi.org/10.1128/JCM.00029-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5442552PMC
June 2017

A genome wide association study suggests the association of muskelin with early onset bipolar disorder: Implications for a GABAergic epileptogenic neurogenesis model.

J Affect Disord 2017 Jan 30;208:120-129. Epub 2016 Sep 30.

Department of Psychiatry & Psychology, Mayo Clinic Depression Center, Mayo Clinic, Rochester, MN, United States; Department of Health Sciences Research, Mayo Clinic, Rochester, MN, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jad.2016.09.049DOI Listing
January 2017

Mitochondrial DNA sequence data reveals association of haplogroup U with psychosis in bipolar disorder.

J Psychiatr Res 2017 01 30;84:221-226. Epub 2016 Sep 30.

Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, USA; Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://dx.doi.org/10.1016/j.jpsychires.2016.09.027DOI Listing
January 2017

Modeling X Chromosome Data Using Random Forests: Conquering Sex Bias.

Genet Epidemiol 2016 Feb 7;40(2):123-32. Epub 2015 Dec 7.

Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America.

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http://dx.doi.org/10.1002/gepi.21946DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4724236PMC
February 2016

Circulating atrial natriuretic peptide genetic association study identifies a novel gene cluster associated with stroke in whites.

Circ Cardiovasc Genet 2015 Feb 1;8(1):141-9. Epub 2014 Dec 1.

From the Division of Cardiovascular Diseases, Department of Internal Medicine (N.L.P., T.M.O., R.J.R., M.M.R., J.C.B.), Department of Biomedical Statistics and Informatics (N.T., C.G.S, G.D.J., N.P.), and Division of Clinical Pharmacology, Department of Molecular Pharmacology and Experimental Therapeutics (N.L.P., R.M.W.), Mayo Clinic, Rochester, MN.

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http://dx.doi.org/10.1161/CIRCGENETICS.114.000624DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4387792PMC
February 2015

Aromatase inhibitor-associated bone fractures: a case-cohort GWAS and functional genomics.

Mol Endocrinol 2014 Oct 22;28(10):1740-51. Epub 2014 Aug 22.

Division of Clinical Pharmacology (M.L., L.W., R.M.W.), Department of Molecular Pharmacology and Experimental Therapeutics; Departments of Oncology (J.N.I.) and Health Sciences Research (A.B., G.D.J., E.E.C., D.J.S.); and Division of Endocrinology (S.K.), Mayo Clinic, Rochester, Minnesota 55905; Massachusetts General Hospital (P.E.G.), Harvard University, Boston, Massachusetts 02114; Rikagaku Kenkyūsho Center for Integrative Medical Science (M.K., Y.F.), Yokohama, Japan 230-0045; School of Medicine (Y.N.), Chicago University, Chicago, Illinois 60637; National Cancer Institute of Canada Clinical Trials Group (J.-A.W.C., L.E.S.), Kingston, Ontario, Canada K7L 3N6; and Division of Oncology (M.J.E.), Department of Medicine, Washington University School of Medicine, St Louis, Missouri 63110.

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http://dx.doi.org/10.1210/me.2014-1147DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4179631PMC
October 2014

Kernel canonical correlation analysis for assessing gene-gene interactions and application to ovarian cancer.

Eur J Hum Genet 2014 Jan 17;22(1):126-31. Epub 2013 Apr 17.

1] Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA [2] Department of Biostatistics, University of Kansas Medical Center, Kansas City, KS, USA.

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http://dx.doi.org/10.1038/ejhg.2013.69DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865403PMC
January 2014

Integrative gene set analysis: application to platinum pharmacogenomics.

OMICS 2014 Jan 7;18(1):34-41. Epub 2013 Nov 7.

1 Department of Biostatistics, University of Kansas Medical Center , Kansas City, Kansas.

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http://dx.doi.org/10.1089/omi.2013.0099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3903166PMC
January 2014

Soft truncation thresholding for gene set analysis of RNA-seq data: application to a vaccine study.

Sci Rep 2013 Oct 9;3:2898. Epub 2013 Oct 9.

Department of Biostatistics, University of Kansas Medical Center, Kansas City, KS, 66160.

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http://dx.doi.org/10.1038/srep02898DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3793215PMC
October 2013

Regression modeling of allele frequencies and testing Hardy Weinberg Equilibrium.

Hum Hered 2012 11;74(2):71-82. Epub 2013 Jan 11.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1159/000345846DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708318PMC
September 2013

Two-phase designs to follow-up genome-wide association signals with DNA resequencing studies.

Genet Epidemiol 2013 Apr 24;37(3):229-38. Epub 2013 Jan 24.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1002/gepi.21708DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3740575PMC
April 2013

Genome-wide gene-set analysis for identification of pathways associated with alcohol dependence.

Int J Neuropsychopharmacol 2013 Mar 2;16(2):271-8. Epub 2012 May 2.

Divisions of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://dx.doi.org/10.1017/S1461145712000375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3854955PMC
March 2013

Identifying the genetic variation of gene expression using gene sets: application of novel gene Set eQTL approach to PharmGKB and KEGG.

PLoS One 2012 14;7(8):e43301. Epub 2012 Aug 14.

Division of Clinical Pharmacology, Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0043301PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3419168PMC
February 2013

Localization of association signal from risk and protective variants in sequencing studies.

Front Genet 2012 6;3:173. Epub 2012 Sep 6.

Department of Health Sciences Research, Mayo Clinic Rochester, MN, USA.

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http://dx.doi.org/10.3389/fgene.2012.00173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3434438PMC
October 2012

Use of the gamma method for self-contained gene-set analysis of SNP data.

Eur J Hum Genet 2012 May 14;20(5):565-71. Epub 2011 Dec 14.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1038/ejhg.2011.236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3330217PMC
May 2012

A Bayesian integrative genomic model for pathway analysis of complex traits.

Genet Epidemiol 2012 May 28;36(4):352-9. Epub 2012 Mar 28.

Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.

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http://dx.doi.org/10.1002/gepi.21628DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894829PMC
May 2012

Serine hydroxymethyltransferase 1 and 2: gene sequence variation and functional genomic characterization.

J Neurochem 2012 Mar 6;120(6):881-90. Epub 2012 Feb 6.

Division of Clinical Pharmacology, Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1111/j.1471-4159.2012.07646.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3296836PMC
March 2012

Using the gene ontology to scan multilevel gene sets for associations in genome wide association studies.

Genet Epidemiol 2012 Jan 7;36(1):3-16. Epub 2011 Dec 7.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.

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http://doi.wiley.com/10.1002/gepi.20632
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http://dx.doi.org/10.1002/gepi.20632DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3310255PMC
January 2012

Gene set analysis of purine and pyrimidine antimetabolites cancer therapies.

Pharmacogenet Genomics 2011 Nov;21(11):701-12

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, Minnesota 55905, USA.

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http://dx.doi.org/10.1097/FPC.0b013e32834a48a9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192305PMC
November 2011

A latent model for prioritization of SNPs for functional studies.

PLoS One 2011 8;6(6):e20764. Epub 2011 Jun 8.

Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, Minnesota, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0020764PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3110798PMC
October 2011

Genetic variation predicting cisplatin cytotoxicity associated with overall survival in lung cancer patients receiving platinum-based chemotherapy.

Clin Cancer Res 2011 Sep 20;17(17):5801-11. Epub 2011 Jul 20.

Division of Clinical Pharmacology, Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic College of Medicine, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-11-1133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3167019PMC
September 2011

Mycophenolic acid response biomarkers: a cell line model system-based genome-wide screen.

Int Immunopharmacol 2011 Aug 23;11(8):1057-64. Epub 2011 Mar 23.

Division of Clinical Pharmacology, Department of Pharmacology and Experimental Therapeutics, Rochester, MN 55905, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S156757691100119
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http://dx.doi.org/10.1016/j.intimp.2011.02.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3138818PMC
August 2011

Ecto-5'-nucleotidase and thiopurine cellular circulation: association with cytotoxicity.

Drug Metab Dispos 2010 Dec 20;38(12):2329-38. Epub 2010 Sep 20.

Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, 200 First St. SW, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1124/dmd.110.035220DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2993460PMC
December 2010

Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.

Genome Res 2010 Nov 5;20(11):1482-92. Epub 2010 Oct 5.

Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota 55905, USA.

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http://dx.doi.org/10.1101/gr.107672.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2963812PMC
November 2010

Localizing putative markers in genetic association studies by incorporating linkage disequilibrium into bayesian hierarchical models.

Hum Hered 2010 10;70(1):63-73. Epub 2010 Jun 10.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, MN 55905, USA. fridley.brooke @ mayo.edu

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http://dx.doi.org/10.1159/000313852DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2918651PMC
October 2010

Self-contained gene-set analysis of expression data: an evaluation of existing and novel methods.

PLoS One 2010 Sep 17;5(9). Epub 2010 Sep 17.

Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0012693PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2941449PMC
September 2010

A genomewide association study of citalopram response in major depressive disorder.

Biol Psychiatry 2010 Jan;67(2):133-8

Department of Psychiatry and Institute for Human Genetics, University of California, San Francisco, San Francisco, CA 94143-0984, USA.

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http://dx.doi.org/10.1016/j.biopsych.2009.08.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2794921PMC
January 2010

FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt.

Cancer Cell 2009 Sep;16(3):259-66

Division of Oncology Research, Department of Oncology, Mayo Clinic, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1016/j.ccr.2009.07.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755578PMC
September 2009

Catechol O-methyltransferase pharmacogenomics: human liver genotype-phenotype correlation and proximal promoter studies.

Pharmacogenet Genomics 2009 Aug;19(8):577-87

Division of Clinical Pharmacology, Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota 55905, USA.

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http://dx.doi.org/10.1097/FPC.0b013e32832c15c6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3052748PMC
August 2009

Incidence and clinical spectrum of thiazide-associated hypercalcemia.

Am J Med 2007 Oct 16;120(10):911.e9-15. Epub 2007 Apr 16.

Division of Endocrinology, Department of Medicine, Mayo Clinic College of Medicine, Rochester, Minn 55905, USA.

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http://dx.doi.org/10.1016/j.amjmed.2006.07.044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2065855PMC
October 2007

Human SULT1A1 gene: copy number differences and functional implications.

Hum Mol Genet 2007 Mar 22;16(5):463-70. Epub 2006 Dec 22.

Department of Laboratory Medicine and Pathology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1093/hmg/ddl468DOI Listing
March 2007

Exact tests of Hardy-Weinberg equilibrium and homogeneity of disequilibrium across strata.

Am J Hum Genet 2006 Dec 3;79(6):1071-80. Epub 2006 Nov 3.

Section of Biostatistics, Mayo Clinic, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1086/510257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1698709PMC
December 2006

Completion pneumonectomy: factors affecting operative mortality and cardiopulmonary morbidity.

Ann Thorac Surg 2002 Sep;74(3):876-83; discussion 883-4

Division of General Thoracic Surgery , Mayo Clinic and Mayo Foundation, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1016/s0003-4975(02)03855-9DOI Listing
September 2002