Publications by authors named "Graham McVicker"

17Publications

Discovering functional sequences with RELICS, an analysis method for CRISPR screens.

PLoS Comput Biol 2020 09 16;16(9):e1008194. Epub 2020 Sep 16.

Integrative Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, Unites States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1008194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7521704PMC
September 2020

Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression.

Cell 2018 11 15;175(6):1701-1715.e16. Epub 2018 Nov 15.

La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA; Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA; University of Southampton, Faculty of Medicine, Southampton SO16 6YD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2018.10.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6289654PMC
November 2018

A comparison of nucleosome organization in Drosophila cell lines.

PLoS One 2017 1;12(6):e0178590. Epub 2017 Jun 1.

Department of Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0178590PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453549PMC
September 2017

A Genomic Map of the Effects of Linked Selection in Drosophila.

PLoS Genet 2016 08 18;12(8):e1006130. Epub 2016 Aug 18.

Department of Biological Sciences, Columbia University, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990265PMC
August 2016

The genome shows its sensitive side.

Nat Methods 2014 Jan;11(1):39-40

1] Department of Genetics, Stanford University, Stanford, California, USA [2] Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/nmeth.2770DOI Listing
January 2014

Controls of nucleosome positioning in the human genome.

PLoS Genet 2012 15;8(11):e1003036. Epub 2012 Nov 15.

Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America.

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https://dx.plos.org/10.1371/journal.pgen.1003036
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http://dx.doi.org/10.1371/journal.pgen.1003036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499251PMC
May 2013

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection.

Genome Res 2011 Oct 27;21(10):1686-94. Epub 2011 Jul 27.

Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1101/gr.121327.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3202285PMC
October 2011

Genomic signatures of germline gene expression.

Genome Res 2010 Nov 4;20(11):1503-11. Epub 2010 Aug 4.

Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1101/gr.106666.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2963814PMC
November 2010

Widespread genomic signatures of natural selection in hominid evolution.

PLoS Genet 2009 May 8;5(5):e1000471. Epub 2009 May 8.

Department of Genome Sciences, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1371/journal.pgen.1000471DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2669884PMC
May 2009

The Ensembl core software libraries.

Genome Res 2004 May;14(5):929-33

EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.

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http://www.genome.org/cgi/doi/10.1101/gr.1857204
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http://dx.doi.org/10.1101/gr.1857204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC479122PMC
May 2004

GeneComber: combining outputs of gene prediction programs for improved results.

Bioinformatics 2003 Jul;19(10):1296-7

UBC Bioinformatics Centre, University of British Columbia, 950 28th Ave W, Vancouver, BC V5Z4H4 Canada.

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http://dx.doi.org/10.1093/bioinformatics/btg139DOI Listing
July 2003