Gos Micklem

Gos Micklem

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Gos Micklem

Gos Micklem

Publications by authors named "Gos Micklem"

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The InterMine Android app: Cross-organism genomic data in your pocket.

F1000Res 2018 22;7:1837. Epub 2018 Nov 22.

Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.

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http://dx.doi.org/10.12688/f1000research.17005.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572867PMC
November 2019

InterMineR: an R package for InterMine databases.

Bioinformatics 2019 Sep;35(17):3206-3207

Department of Genetics, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1093/bioinformatics/btz039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736411PMC
September 2019

Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species.

PLoS Biol 2018 04 24;16(4):e2004830. Epub 2018 Apr 24.

Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire, United Kingdom.

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http://dx.doi.org/10.1371/journal.pbio.2004830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5916493PMC
April 2018

ComplexViewer: visualization of curated macromolecular complexes.

Bioinformatics 2017 Nov;33(22):3673-3675

Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3BF, UK.

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http://dx.doi.org/10.1093/bioinformatics/btx497DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870653PMC
November 2017

Correction for Guo et al., "Poly(A) Signals Located near the 5' End of Genes Are Silenced by a General Mechanism That Prevents Premature 3'-End Processing".

Mol Cell Biol 2017 07 15;37(13). Epub 2017 Jun 15.

School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom.

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http://dx.doi.org/10.1128/MCB.00189-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5472826PMC
July 2017

Empirical Bayes method for reducing false discovery rates of correlation matrices with block diagonal structure.

BMC Bioinformatics 2017 Apr 12;18(1):213. Epub 2017 Apr 12.

CCBI, Department Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge, CB3 0WA, UK.

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http://dx.doi.org/10.1186/s12859-017-1623-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389176PMC
April 2017

ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery.

Plant Cell Physiol 2017 01;58(1):e4

Plant Genomics, J. Craig Venter Institute, Medical Center Dr, Rockville, MD, USA.

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http://dx.doi.org/10.1093/pcp/pcw200DOI Listing
January 2017

Urinary Exosomes Contain MicroRNAs Capable of Paracrine Modulation of Tubular Transporters in Kidney.

Sci Rep 2017 01 17;7:40601. Epub 2017 Jan 17.

Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1038/srep40601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5240140PMC
January 2017

toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research.

Database (Oxford) 2015 30;2015:bav066. Epub 2015 Jun 30.

Department of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA, Department of Mathematical Sciences, Yeshiva University, New York, NY 10033, USA

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http://dx.doi.org/10.1093/database/bav066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4485433PMC
March 2016

esyN: network building, sharing and publishing.

PLoS One 2014 2;9(9):e106035. Epub 2014 Sep 2.

Cambridge Systems Biology Centre, University of Cambridge, Cambridge, United Kingdom; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0106035PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4152123PMC
May 2015

Identification of microRNAs in the coral Stylophora pistillata.

PLoS One 2014 21;9(3):e91101. Epub 2014 Mar 21.

Red Sea Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0091101PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962355PMC
January 2015

InterMine: extensive web services for modern biology.

Nucleic Acids Res 2014 Jul 21;42(Web Server issue):W468-72. Epub 2014 Apr 21.

Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK

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http://dx.doi.org/10.1093/nar/gku301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086141PMC
July 2014

BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs.

F1000Res 2014 13;3:51. Epub 2014 Feb 13.

Department of Genetics and Cambridge Systems Biology Centre, Cambridge University, Cambridge, CB2 3EH, UK.

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http://dx.doi.org/10.12688/f1000research.3-51.v1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3945768PMC
March 2014

metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research.

Database (Oxford) 2013 9;2013:bat060. Epub 2013 Aug 9.

Cambridge Systems Biology Centre, University of Cambridge, Cambridge CB2 1QR, UK.

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http://dx.doi.org/10.1093/database/bat060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4438919PMC
October 2013

Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals.

BMC Genomics 2013 Oct 12;14:704. Epub 2013 Oct 12.

Red Sea Research Center, King Abdullah University of Science and Technology (KAUST), 4700 KAUST, Thuwal 23955, Saudi Arabia.

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http://dx.doi.org/10.1186/1471-2164-14-704DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3853145PMC
October 2013

Biochemical diversification through foreign gene expression in bdelloid rotifers.

PLoS Genet 2012 15;8(11):e1003035. Epub 2012 Nov 15.

Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1003035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499245PMC
May 2013

Multiple functionally divergent and conserved copies of alpha tubulin in bdelloid rotifers.

BMC Evol Biol 2012 Aug 17;12:148. Epub 2012 Aug 17.

Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire, SL5 7PY, UK.

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http://dx.doi.org/10.1186/1471-2148-12-148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3464624PMC
August 2012

MicroRNAs dysregulated in breast cancer preferentially target key oncogenic pathways.

Mol Biosyst 2011 Sep 18;7(9):2571-6. Epub 2011 Jul 18.

Cambridge Systems Biology Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QR, United Kingdom.

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http://xlink.rsc.org/?DOI=c1mb05181d
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http://dx.doi.org/10.1039/c1mb05181dDOI Listing
September 2011

The impact of quantitative optimization of hybridization conditions on gene expression analysis.

BMC Bioinformatics 2011 Mar 14;12:73. Epub 2011 Mar 14.

Department of Biotechnology, Boku University, Vienna, A-1190 Muthgasse 18, Austria.

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http://dx.doi.org/10.1186/1471-2105-12-73DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065421PMC
March 2011

Poly(A) signals located near the 5' end of genes are silenced by a general mechanism that prevents premature 3'-end processing.

Mol Cell Biol 2011 Feb 6;31(4):639-51. Epub 2010 Dec 6.

School of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.

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http://dx.doi.org/10.1128/MCB.00919-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3028650PMC
February 2011

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Science 2010 Dec 22;330(6012):1787-97. Epub 2010 Dec 22.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA.

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http://compbio.mit.edu/publications/46_modENCODE_Science_10.
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http://www.sciencemag.org/cgi/doi/10.1126/science.1198374
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http://dx.doi.org/10.1126/science.1198374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192495PMC
December 2010

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1126/science.1196914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142569PMC
December 2010

Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells.

Dev Cell 2006 Dec;11(6):775-89

The Gurdon Institute and Department of Physiology, Development and Neuroscience, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.

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http://linkinghub.elsevier.com/retrieve/pii/S153458070600408
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http://dx.doi.org/10.1016/j.devcel.2006.09.015DOI Listing
December 2006