Gordon B Mills

Gordon B Mills

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Gordon B Mills

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A-to-I-edited miRNA-379-5p inhibits cancer cell proliferation through CD97-induced apoptosis.

J Clin Invest 2019 Nov 4. Epub 2019 Nov 4.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1172/JCI123396DOI Listing
November 2019

MCP-1/CCR-2 axis in adipocytes and cancer cell respectively facilitates ovarian cancer peritoneal metastasis.

Oncogene 2019 Nov 8. Epub 2019 Nov 8.

Department of Gynecology and Obstetrics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, Hubei, PR China.

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http://dx.doi.org/10.1038/s41388-019-1090-1DOI Listing
November 2019

Genome-Wide Profiling of Acquired Uniparental Disomy Reveals Prognostic Factors in Head and Neck Squamous Cell Carcinoma.

Neoplasia 2019 Nov 14;21(11):1102-1109. Epub 2019 Nov 14.

Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX; Department of Cell, Developmental & Cancer Biology, School of Medicine, Oregon Health Science University, Portland, OR; Precision Oncology, Knight Cancer Institute, Portland, OR.

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http://dx.doi.org/10.1016/j.neo.2019.08.008DOI Listing
November 2019

Dynamic clonal remodelling in breast cancer metastases is associated with subtype conversion.

Eur J Cancer 2019 Oct 4;120:54-64. Epub 2019 Sep 4.

GEICAM (Grupo GEICAM de Investigación en Cáncer de Mama), Madrid, Spain; Centro de Investigación Biomédica en Red de Oncología, CIBERONC-ISCIII, Spain; IMIM Hospital del Mar Medical Research Institute; Barcelona, Spain; Medical Oncology Department Hospital del Mar, Barcelona, Barcelona, Spain; Universitat Pompeu Fabra, Barcelona, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2019.07.003DOI Listing
October 2019

Proteomics advances for precision therapy in ovarian cancer.

Expert Rev Proteomics 2019 Oct 13;16(10):841-850. Epub 2019 Sep 13.

Knight Cancer Institute and Cell, Developmental and Cancer Biology, Oregon Health and Science University , Portland , OR , USA.

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https://www.tandfonline.com/doi/full/10.1080/14789450.2019.1
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http://dx.doi.org/10.1080/14789450.2019.1666004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814571PMC
October 2019

Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer.

Nat Commun 2019 Oct 8;10(1):4562. Epub 2019 Oct 8.

Department of Biochemistry and Molecular Biology, McGovern Medical School at The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1038/s41467-019-12543-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6783481PMC
October 2019

Advancing Drug Development in Gynecologic Malignancies.

Clin Cancer Res 2019 Aug 24;25(16):4874-4880. Epub 2019 May 24.

University of Cincinnati Cancer Institute, Cincinnati, Ohio.

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http://dx.doi.org/10.1158/1078-0432.CCR-19-0619DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6697564PMC
August 2019

The DNA Endonuclease Mus81 Regulates ZEB1 Expression and Serves as a Target of BET4 Inhibitors in Gastric Cancer.

Mol Cancer Ther 2019 Aug 29;18(8):1439-1450. Epub 2019 May 29.

Department of Clinical Cancer Prevention, the University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1535-7163.MCT-18-0833DOI Listing
August 2019

TCPA v3.0: An Integrative Platform to Explore the Pan-Cancer Analysis of Functional Proteomic Data.

Mol Cell Proteomics 2019 Aug 14;18(8 suppl 1):S15-S25. Epub 2019 Jun 14.

‡Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas

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http://dx.doi.org/10.1074/mcp.RA118.001260DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6692772PMC
August 2019

Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines.

Genome Med 2019 08 26;11(1):55. Epub 2019 Aug 26.

Department of Biochemistry and Molecular Biology, McGovern Medical School at The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13073-019-0663-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6709551PMC
August 2019

The phosphatase PPM1A inhibits triple negative breast cancer growth by blocking cell cycle progression.

NPJ Breast Cancer 2019 26;5:22. Epub 2019 Jul 26.

1Department of Clinical Cancer Prevention, The University of Texas M.D. Anderson Cancer Center, Texas, USA.

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http://www.nature.com/articles/s41523-019-0118-6
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http://dx.doi.org/10.1038/s41523-019-0118-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6659706PMC
July 2019

Sequential Therapy with PARP and WEE1 Inhibitors Minimizes Toxicity while Maintaining Efficacy.

Cancer Cell 2019 Jun;35(6):851-867.e7

Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Department of Cell, Development and Cancer Biology, Oregon Health and Sciences University, Portland, OR 97201, USA; Knight Cancer Institute, Portland, OR 97201, USA.

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http://dx.doi.org/10.1016/j.ccell.2019.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6642675PMC
June 2019

Integrated transcriptomic-genomic tool Texomer profiles cancer tissues.

Nat Methods 2019 05 15;16(5):401-404. Epub 2019 Apr 15.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1038/s41592-019-0388-9DOI Listing
May 2019

Protein Kinase C Quality Control by Phosphatase PHLPP1 Unveils Loss-of-Function Mechanism in Cancer.

Mol Cell 2019 04 20;74(2):378-392.e5. Epub 2019 Mar 20.

Department of Pharmacology, University of California at San Diego, La Jolla, CA 92093, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2019.02.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6504549PMC
April 2019

Therapeutic Clues from an Integrated Omic Assessment of East Asian Triple Negative Breast Cancers.

Cancer Cell 2019 Mar;35(3):341-343

Center for Spatial Systems Biomedicine, Department of Biomedical Engineering, Oregon Health & Science University, Portland, OR 97201, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2019.02.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6499473PMC
March 2019

Targeting mitochondria in cancer therapy could provide a basis for the selective anti-cancer activity.

PLoS One 2019 25;14(3):e0205623. Epub 2019 Mar 25.

Department of Molecular and Medical Genetics, Knight Cancer Institute, Oregon Health and Science University, Portland, Oregon, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205623PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6433232PMC
March 2019

Molecular mechanisms and pathobiology of oncogenic fusion transcripts in epithelial tumors.

Oncotarget 2019 Mar 12;10(21):2095-2111. Epub 2019 Mar 12.

Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.18632/oncotarget.26777DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459343PMC
March 2019

State-of-the-art strategies for targeting the DNA damage response in cancer.

Nat Rev Clin Oncol 2019 02;16(2):81-104

Department of Investigational Cancer Therapeutics (Phase I Program), The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://www.nature.com/articles/s41571-018-0114-z
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http://dx.doi.org/10.1038/s41571-018-0114-zDOI Listing
February 2019

Cooperative Effect of Oncogenic and in an HGF-Dominant Environment in Breast Cancer.

Mol Cancer Ther 2019 02 5;18(2):399-412. Epub 2018 Dec 5.

Department of Breast Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1535-7163.MCT-18-0710DOI Listing
February 2019

Genome-Wide Analysis of Head and Neck Squamous Cell Carcinomas Reveals HPV, TP53, Smoking and Alcohol-Related Allele-Based Acquired Uniparental Disomy Genomic Alterations.

Neoplasia 2019 02 4;21(2):197-205. Epub 2019 Jan 4.

Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX; Department of Cell, Developmental & Cancer Biology, Oregon Health & Science University, Portland, OR; Precision Oncology, Knight Cancer Institute, Oregon Health & Science University, Portland, OR.

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https://linkinghub.elsevier.com/retrieve/pii/S14765586183060
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http://dx.doi.org/10.1016/j.neo.2018.12.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321975PMC
February 2019

Deregulated Gab2 phosphorylation mediates aberrant AKT and STAT3 signaling upon PIK3R1 loss in ovarian cancer.

Nat Commun 2019 02 12;10(1):716. Epub 2019 Feb 12.

School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, Hong Kong.

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http://dx.doi.org/10.1038/s41467-019-08574-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372715PMC
February 2019

Neomorphic PDGFRA extracellular domain driver mutations are resistant to PDGFRA targeted therapies.

Nat Commun 2018 11 2;9(1):4583. Epub 2018 Nov 2.

Department of Systems Biology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX, 77030, USA.

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http://www.nature.com/articles/s41467-018-06949-w
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http://dx.doi.org/10.1038/s41467-018-06949-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214970PMC
November 2018

β-catenin/TCF activity regulates IGF-1R tyrosine kinase inhibitor sensitivity in colon cancer.

Oncogene 2018 10 12;37(40):5466-5475. Epub 2018 Jun 12.

Research Center for Cell Fate Control, College of Pharmacy, Sookmyung Women's University, Seoul, 04310, Republic of Korea.

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http://dx.doi.org/10.1038/s41388-018-0362-5DOI Listing
October 2018

Dual Src and MEK Inhibition Decreases Ovarian Cancer Growth and Targets Tumor Initiating Stem-Like Cells.

Clin Cancer Res 2018 10 29;24(19):4874-4886. Epub 2018 Jun 29.

Braman Family Breast Cancer Institute at Sylvester Comprehensive Cancer Center, University of Miami, Miami, Florida.

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http://dx.doi.org/10.1158/1078-0432.CCR-17-3697DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6557165PMC
October 2018

Modulation of the Hippo pathway and organ growth by RNA processing proteins.

Proc Natl Acad Sci U S A 2018 10 26;115(42):10684-10689. Epub 2018 Sep 26.

Vlaams Instituut voor Biotechnologie (VIB) Center for Cancer Biology, University of Leuven, 3000 Leuven, Belgium;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1807325115
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http://dx.doi.org/10.1073/pnas.1807325115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6196505PMC
October 2018

Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer.

Cell Rep 2018 10;25(5):1304-1317.e5

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Graduate Program in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX 77030, USA; Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183156
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http://dx.doi.org/10.1016/j.celrep.2018.10.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6326181PMC
October 2018

Autotaxin exacerbates tumor progression by enhancing MEK1 and overriding the function of miR-489-3p.

Cancer Lett 2018 09 31;432:84-92. Epub 2018 May 31.

Department of Pharmaceutical and Biomedical Sciences, The University of Georgia, College of Pharmacy, 240 W. Green Street, Athens, 30602, GA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.canlet.2018.05.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6075675PMC
September 2018

Systems biology approach reveals a link between mTORC1 and G2/M DNA damage checkpoint recovery.

Nat Commun 2018 09 28;9(1):3982. Epub 2018 Sep 28.

Department of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://www.nature.com/articles/s41467-018-05639-x
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http://dx.doi.org/10.1038/s41467-018-05639-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6162282PMC
September 2018

Credentialing Individual Samples for Proteogenomic Analysis.

Mol Cell Proteomics 2018 08 1;17(8):1515-1530. Epub 2018 May 1.

From the ‡Department of Systems Biology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030.

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http://dx.doi.org/10.1074/mcp.RA118.000645DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072548PMC
August 2018

Cancer driver mutation prediction through Bayesian integration of multi-omic data.

PLoS One 2018 8;13(5):e0196939. Epub 2018 May 8.

Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0196939PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5940219PMC
August 2018

Gene Regulatory Network Perturbation by Genetic and Epigenetic Variation.

Trends Biochem Sci 2018 08 22;43(8):576-592. Epub 2018 Jun 22.

Department of Oncology, Dell Medical School, The University of Texas at Austin, Austin, TX 78712, USA; Department of Biomedical Engineering, Cockrell School of Engineering, The University of Texas at Austin, Austin, TX 78712, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tibs.2018.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6215597PMC
August 2018

Author Correction: Estrogen-related receptor gamma functions as a tumor suppressor in gastric cancer.

Nat Commun 2018 08 31;9(1):3599. Epub 2018 Aug 31.

ASAN Institute for Life Sciences, ASAN Medical Center, University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea.

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http://dx.doi.org/10.1038/s41467-018-06061-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6119198PMC
August 2018

Defective Replication Stress Response Is Inherently Linked to the Cancer Stem Cell Phenotype.

Cell Rep 2018 05;23(7):2095-2106

Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183062
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http://dx.doi.org/10.1016/j.celrep.2018.04.068DOI Listing
May 2018

Multi-omics analysis reveals neoantigen-independent immune cell infiltration in copy-number driven cancers.

Nat Commun 2018 04 3;9(1):1317. Epub 2018 Apr 3.

Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1038/s41467-018-03730-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5882811PMC
April 2018

EGFR-Phosphorylated Platelet Isoform of Phosphofructokinase 1 Promotes PI3K Activation.

Mol Cell 2018 04;70(2):197-210.e7

Brain Tumor Center and Department of Neuro-Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA; Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA; Cancer Biology Program, MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, The University of Texas, Houston, Texas 77030, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10972765183022
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http://dx.doi.org/10.1016/j.molcel.2018.03.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6114939PMC
April 2018

Predicting high-risk endometrioid carcinomas using proteins.

Oncotarget 2018 Apr 13;9(28):19704-19715. Epub 2018 Apr 13.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.18632/oncotarget.24803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929419PMC
April 2018

The Genomic Landscape and Pharmacogenomic Interactions of Clock Genes in Cancer Chronotherapy.

Cell Syst 2018 Mar 7;6(3):314-328.e2. Epub 2018 Mar 7.

Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School, Houston, TX 77030, USA; The Graduate School of Biomedical Sciences, The University of Texas MD Anderson Cancer Center and UTHealth, Houston, TX 77030, USA; Center for Precision Health, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2018.01.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6056007PMC
March 2018

Microenvironment-Mediated Mechanisms of Resistance to HER2 Inhibitors Differ between HER2+ Breast Cancer Subtypes.

Cell Syst 2018 Mar 14;6(3):329-342.e6. Epub 2018 Mar 14.

Department of Biomedical Engineering, Knight Cancer Institute, OHSU Center for Spatial Systems Biomedicine, Oregon Health and Science University, 3181 SW Sam Jackson Park Road, Portland, OR 97239, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S24054712183005
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http://dx.doi.org/10.1016/j.cels.2018.02.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5927625PMC
March 2018

Surviving Ovarian Cancer: An Affair between Defective DNA Repair and RB1.

Clin Cancer Res 2018 02 30;24(3):508-510. Epub 2017 Nov 30.

Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1078-0432.CCR-17-3022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905329PMC
February 2018

Preclinical evaluation and reverse phase protein Array-based profiling of PI3K and MEK inhibitors in endometrial carcinoma in vitro.

BMC Cancer 2018 02 9;18(1):168. Epub 2018 Feb 9.

Department of Medical Oncology, Royal College of Surgeons in Ireland, Beaumont Hospital, Dublin 9, Ireland.

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http://dx.doi.org/10.1186/s12885-018-4035-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807759PMC
February 2018

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Authors:
Alexandra B Keenan Sherry L Jenkins Kathleen M Jagodnik Simon Koplev Edward He Denis Torre Zichen Wang Anders B Dohlman Moshe C Silverstein Alexander Lachmann Maxim V Kuleshov Avi Ma'ayan Vasileios Stathias Raymond Terryn Daniel Cooper Michele Forlin Amar Koleti Dusica Vidovic Caty Chung Stephan C Schürer Jouzas Vasiliauskas Marcin Pilarczyk Behrouz Shamsaei Mehdi Fazel Yan Ren Wen Niu Nicholas A Clark Shana White Naim Mahi Lixia Zhang Michal Kouril John F Reichard Siva Sivaganesan Mario Medvedovic Jaroslaw Meller Rick J Koch Marc R Birtwistle Ravi Iyengar Eric A Sobie Evren U Azeloglu Julia Kaye Jeannette Osterloh Kelly Haston Jaslin Kalra Steve Finkbiener Jonathan Li Pamela Milani Miriam Adam Renan Escalante-Chong Karen Sachs Alex Lenail Divya Ramamoorthy Ernest Fraenkel Gavin Daigle Uzma Hussain Alyssa Coye Jeffrey Rothstein Dhruv Sareen Loren Ornelas Maria Banuelos Berhan Mandefro Ritchie Ho Clive N Svendsen Ryan G Lim Jennifer Stocksdale Malcolm S Casale Terri G Thompson Jie Wu Leslie M Thompson Victoria Dardov Vidya Venkatraman Andrea Matlock Jennifer E Van Eyk Jacob D Jaffe Malvina Papanastasiou Aravind Subramanian Todd R Golub Sean D Erickson Mohammad Fallahi-Sichani Marc Hafner Nathanael S Gray Jia-Ren Lin Caitlin E Mills Jeremy L Muhlich Mario Niepel Caroline E Shamu Elizabeth H Williams David Wrobel Peter K Sorger Laura M Heiser Joe W Gray James E Korkola Gordon B Mills Mark LaBarge Heidi S Feiler Mark A Dane Elmar Bucher Michel Nederlof Damir Sudar Sean Gross David F Kilburn Rebecca Smith Kaylyn Devlin Ron Margolis Leslie Derr Albert Lee Ajay Pillai

Cell Syst 2018 01 29;6(1):13-24. Epub 2017 Nov 29.

NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.cels.2017.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5799026PMC
January 2018

Characteristics of percutaneous core biopsies adequate for next generation genomic sequencing.

PLoS One 2017 27;12(12):e0189651. Epub 2017 Dec 27.

Department of Interventional Radiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0189651PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5744968PMC
January 2018