Glen Threadgold

Glen Threadgold

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Glen Threadgold

Glen Threadgold

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Ensembl 2020.

Authors:
Andrew D Yates Premanand Achuthan Wasiu Akanni James Allen Jamie Allen Jorge Alvarez-Jarreta M Ridwan Amode Irina M Armean Andrey G Azov Ruth Bennett Jyothish Bhai Konstantinos Billis Sanjay Boddu José Carlos Marugán Carla Cummins Claire Davidson Kamalkumar Dodiya Reham Fatima Astrid Gall Carlos Garcia Giron Laurent Gil Tiago Grego Leanne Haggerty Erin Haskell Thibaut Hourlier Osagie G Izuogu Sophie H Janacek Thomas Juettemann Mike Kay Ilias Lavidas Tuan Le Diana Lemos Jose Gonzalez Martinez Thomas Maurel Mark McDowall Aoife McMahon Shamika Mohanan Benjamin Moore Michael Nuhn Denye N Oheh Anne Parker Andrew Parton Mateus Patricio Manoj Pandian Sakthivel Ahamed Imran Abdul Salam Bianca M Schmitt Helen Schuilenburg Dan Sheppard Mira Sycheva Marek Szuba Kieron Taylor Anja Thormann Glen Threadgold Alessandro Vullo Brandon Walts Andrea Winterbottom Amonida Zadissa Marc Chakiachvili Bethany Flint Adam Frankish Sarah E Hunt Garth IIsley Myrto Kostadima Nick Langridge Jane E Loveland Fergal J Martin Joannella Morales Jonathan M Mudge Matthieu Muffato Emily Perry Magali Ruffier Stephen J Trevanion Fiona Cunningham Kevin L Howe Daniel R Zerbino Paul Flicek

Nucleic Acids Res 2020 Jan;48(D1):D682-D688

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkz966DOI Listing
January 2020

Ensembl 2019.

Authors:
Fiona Cunningham Premanand Achuthan Wasiu Akanni James Allen M Ridwan Amode Irina M Armean Ruth Bennett Jyothish Bhai Konstantinos Billis Sanjay Boddu Carla Cummins Claire Davidson Kamalkumar Jayantilal Dodiya Astrid Gall Carlos García Girón Laurent Gil Tiago Grego Leanne Haggerty Erin Haskell Thibaut Hourlier Osagie G Izuogu Sophie H Janacek Thomas Juettemann Mike Kay Matthew R Laird Ilias Lavidas Zhicheng Liu Jane E Loveland José C Marugán Thomas Maurel Aoife C McMahon Benjamin Moore Joannella Morales Jonathan M Mudge Michael Nuhn Denye Ogeh Anne Parker Andrew Parton Mateus Patricio Ahamed Imran Abdul Salam Bianca M Schmitt Helen Schuilenburg Dan Sheppard Helen Sparrow Eloise Stapleton Marek Szuba Kieron Taylor Glen Threadgold Anja Thormann Alessandro Vullo Brandon Walts Andrea Winterbottom Amonida Zadissa Marc Chakiachvili Adam Frankish Sarah E Hunt Myrto Kostadima Nick Langridge Fergal J Martin Matthieu Muffato Emily Perry Magali Ruffier Daniel M Staines Stephen J Trevanion Bronwen L Aken Andrew D Yates Daniel R Zerbino Paul Flicek

Nucleic Acids Res 2019 Jan;47(D1):D745-D751

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323964PMC
January 2019

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.

Authors:
Jingtao Lilue Anthony G Doran Ian T Fiddes Monica Abrudan Joel Armstrong Ruth Bennett William Chow Joanna Collins Stephan Collins Anne Czechanski Petr Danecek Mark Diekhans Dirk-Dominik Dolle Matt Dunn Richard Durbin Dent Earl Anne Ferguson-Smith Paul Flicek Jonathan Flint Adam Frankish Beiyuan Fu Mark Gerstein James Gilbert Leo Goodstadt Jennifer Harrow Kerstin Howe Ximena Ibarra-Soria Mikhail Kolmogorov Chris J Lelliott Darren W Logan Jane Loveland Clayton E Mathews Richard Mott Paul Muir Stefanie Nachtweide Fabio C P Navarro Duncan T Odom Naomi Park Sarah Pelan Son K Pham Mike Quail Laura Reinholdt Lars Romoth Lesley Shirley Cristina Sisu Marcela Sjoberg-Herrera Mario Stanke Charles Steward Mark Thomas Glen Threadgold David Thybert James Torrance Kim Wong Jonathan Wood Binnaz Yalcin Fengtang Yang David J Adams Benedict Paten Thomas M Keane

Nat Genet 2018 11 1;50(11):1574-1583. Epub 2018 Oct 1.

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.

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http://www.nature.com/articles/s41588-018-0223-8
Publisher Site
http://dx.doi.org/10.1038/s41588-018-0223-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6205630PMC
November 2018

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.

Authors:
Valerie A Schneider Tina Graves-Lindsay Kerstin Howe Nathan Bouk Hsiu-Chuan Chen Paul A Kitts Terence D Murphy Kim D Pruitt Françoise Thibaud-Nissen Derek Albracht Robert S Fulton Milinn Kremitzki Vincent Magrini Chris Markovic Sean McGrath Karyn Meltz Steinberg Kate Auger William Chow Joanna Collins Glenn Harden Timothy Hubbard Sarah Pelan Jared T Simpson Glen Threadgold James Torrance Jonathan M Wood Laura Clarke Sergey Koren Matthew Boitano Paul Peluso Heng Li Chen-Shan Chin Adam M Phillippy Richard Durbin Richard K Wilson Paul Flicek Evan E Eichler Deanna M Church

Genome Res 2017 05 10;27(5):849-864. Epub 2017 Apr 10.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.

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http://dx.doi.org/10.1101/gr.213611.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411779PMC
May 2017

The pig X and Y Chromosomes: structure, sequence, and evolution.

Authors:
Benjamin M Skinner Carole A Sargent Carol Churcher Toby Hunt Javier Herrero Jane E Loveland Matt Dunn Sandra Louzada Beiyuan Fu William Chow James Gilbert Siobhan Austin-Guest Kathryn Beal Denise Carvalho-Silva William Cheng Daria Gordon Darren Grafham Matt Hardy Jo Harley Heidi Hauser Philip Howden Kerstin Howe Kim Lachani Peter J I Ellis Daniel Kelly Giselle Kerry James Kerwin Bee Ling Ng Glen Threadgold Thomas Wileman Jonathan M D Wood Fengtang Yang Jen Harrow Nabeel A Affara Chris Tyler-Smith

Genome Res 2016 Jan 11;26(1):130-9. Epub 2015 Nov 11.

Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, United Kingdom;

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http://dx.doi.org/10.1101/gr.188839.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691746PMC
January 2016

The zebrafish reference genome sequence and its relationship to the human genome.

Authors:
Kerstin Howe Matthew D Clark Carlos F Torroja James Torrance Camille Berthelot Matthieu Muffato John E Collins Sean Humphray Karen McLaren Lucy Matthews Stuart McLaren Ian Sealy Mario Caccamo Carol Churcher Carol Scott Jeffrey C Barrett Romke Koch Gerd-Jörg Rauch Simon White William Chow Britt Kilian Leonor T Quintais José A Guerra-Assunção Yi Zhou Yong Gu Jennifer Yen Jan-Hinnerk Vogel Tina Eyre Seth Redmond Ruby Banerjee Jianxiang Chi Beiyuan Fu Elizabeth Langley Sean F Maguire Gavin K Laird David Lloyd Emma Kenyon Sarah Donaldson Harminder Sehra Jeff Almeida-King Jane Loveland Stephen Trevanion Matt Jones Mike Quail Dave Willey Adrienne Hunt John Burton Sarah Sims Kirsten McLay Bob Plumb Joy Davis Chris Clee Karen Oliver Richard Clark Clare Riddle David Elliot David Eliott Glen Threadgold Glenn Harden Darren Ware Sharmin Begum Beverley Mortimore Beverly Mortimer Giselle Kerry Paul Heath Benjamin Phillimore Alan Tracey Nicole Corby Matthew Dunn Christopher Johnson Jonathan Wood Susan Clark Sarah Pelan Guy Griffiths Michelle Smith Rebecca Glithero Philip Howden Nicholas Barker Christine Lloyd Christopher Stevens Joanna Harley Karen Holt Georgios Panagiotidis Jamieson Lovell Helen Beasley Carl Henderson Daria Gordon Katherine Auger Deborah Wright Joanna Collins Claire Raisen Lauren Dyer Kenric Leung Lauren Robertson Kirsty Ambridge Daniel Leongamornlert Sarah McGuire Ruth Gilderthorp Coline Griffiths Deepa Manthravadi Sarah Nichol Gary Barker Siobhan Whitehead Michael Kay Jacqueline Brown Clare Murnane Emma Gray Matthew Humphries Neil Sycamore Darren Barker David Saunders Justene Wallis Anne Babbage Sian Hammond Maryam Mashreghi-Mohammadi Lucy Barr Sancha Martin Paul Wray Andrew Ellington Nicholas Matthews Matthew Ellwood Rebecca Woodmansey Graham Clark James D Cooper James Cooper Anthony Tromans Darren Grafham Carl Skuce Richard Pandian Robert Andrews Elliot Harrison Andrew Kimberley Jane Garnett Nigel Fosker Rebekah Hall Patrick Garner Daniel Kelly Christine Bird Sophie Palmer Ines Gehring Andrea Berger Christopher M Dooley Zübeyde Ersan-Ürün Cigdem Eser Horst Geiger Maria Geisler Lena Karotki Anette Kirn Judith Konantz Martina Konantz Martina Oberländer Silke Rudolph-Geiger Mathias Teucke Christa Lanz Günter Raddatz Kazutoyo Osoegawa Baoli Zhu Amanda Rapp Sara Widaa Cordelia Langford Fengtang Yang Stephan C Schuster Nigel P Carter Jennifer Harrow Zemin Ning Javier Herrero Steve M J Searle Anton Enright Robert Geisler Ronald H A Plasterk Charles Lee Monte Westerfield Pieter J de Jong Leonard I Zon John H Postlethwait Christiane Nüsslein-Volhard Tim J P Hubbard Hugues Roest Crollius Jane Rogers Derek L Stemple

Nature 2013 Apr 17;496(7446):498-503. Epub 2013 Apr 17.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature12111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3703927PMC
April 2013

Modernizing reference genome assemblies.

Authors:
Deanna M Church Valerie A Schneider Tina Graves Katherine Auger Fiona Cunningham Nathan Bouk Hsiu-Chuan Chen Richa Agarwala William M McLaren Graham R S Ritchie Derek Albracht Milinn Kremitzki Susan Rock Holland Kotkiewicz Colin Kremitzki Aye Wollam Lee Trani Lucinda Fulton Robert Fulton Lucy Matthews Siobhan Whitehead Will Chow James Torrance Matthew Dunn Glenn Harden Glen Threadgold Jonathan Wood Joanna Collins Paul Heath Guy Griffiths Sarah Pelan Darren Grafham Evan E Eichler George Weinstock Elaine R Mardis Richard K Wilson Kerstin Howe Paul Flicek Tim Hubbard

PLoS Biol 2011 Jul 5;9(7):e1001091. Epub 2011 Jul 5.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1001091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3130012PMC
July 2011

A physical map of the mouse genome.

Authors:
Simon G Gregory Mandeep Sekhon Jacqueline Schein Shaying Zhao Kazutoyo Osoegawa Carol E Scott Richard S Evans Paul W Burridge Tony V Cox Christopher A Fox Richard D Hutton Ian R Mullenger Kimbly J Phillips James Smith Jim Stalker Glen J Threadgold Ewan Birney Kristine Wylie Asif Chinwalla John Wallis LaDeana Hillier Jason Carter Tony Gaige Sara Jaeger Colin Kremitzki Dan Layman Jason Maas Rebecca McGrane Kelly Mead Rebecca Walker Steven Jones Michael Smith Jennifer Asano Ian Bosdet Susanna Chan Suganthi Chittaranjan Readman Chiu Chris Fjell Dan Fuhrmann Noreen Girn Catharine Gray Ran Guin Letticia Hsiao Martin Krzywinski Reta Kutsche Soo Sen Lee Carrie Mathewson Candice McLeavy Steve Messervier Steven Ness Pawan Pandoh Anna-Liisa Prabhu Parvaneh Saeedi Duane Smailus Lorraine Spence Jeff Stott Sheryl Taylor Wesley Terpstra Miranda Tsai Jill Vardy Natasja Wye George Yang Sofiya Shatsman Bola Ayodeji Keita Geer Getahun Tsegaye Alla Shvartsbeyn Elizabeth Gebregeorgis Margaret Krol Daniel Russell Larry Overton Joel A Malek Mike Holmes Michael Heaney Jyoti Shetty Tamara Feldblyum William C Nierman Joseph J Catanese Tim Hubbard Robert H Waterston Jane Rogers Pieter J de Jong Claire M Fraser Marco Marra John D McPherson David R Bentley

Nature 2002 Aug 4;418(6899):743-50. Epub 2002 Aug 4.

The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature00957DOI Listing
August 2002