Publications by authors named "Giuseppe Narzisi"

21Publications

The challenge of small-scale repeats for indel discovery.

Front Bioeng Biotechnol 2015 26;3. Epub 2015 Jan 26.

Cold Spring Harbor Laboratory, Simons Center for Quantitative Biology, Cold Spring Harbor , New York, NY , USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fbioe.2015.00008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306302PMC
February 2015

Reducing INDEL calling errors in whole genome and exome sequencing data.

Genome Med 2014 28;6(10):89. Epub 2014 Oct 28.

Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, One Bungtown Road, Cold Spring Harbor, NY USA ; Stony Brook University, 100 Nicolls Rd, Stony Brook, NY USA.

View Article

Download full-text PDF

Source
http://schatzlab.cshl.edu/presentations/2014.11.08.Indel%20E
Web Search
http://genomemedicine.com/content/6/10/89
Publisher Site
http://dx.doi.org/10.1186/s13073-014-0089-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4240813PMC
November 2014

Accurate de novo and transmitted indel detection in exome-capture data using microassembly.

Nat Methods 2014 Oct 17;11(10):1033-6. Epub 2014 Aug 17.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmeth.3069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180789PMC
October 2014

Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons.

PLoS One 2012 28;7(12):e52210. Epub 2012 Dec 28.

School of Computer Science and Communication, KTH Royal Institute of Technology, Science for Life Laboratory, Solna, Sweden.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0052210PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532452PMC
June 2013

Feature-by-feature--evaluating de novo sequence assembly.

PLoS One 2012 3;7(2):e31002. Epub 2012 Feb 3.

Department of Mathematics and Informatics, University of Udine, Udine, Italy.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0031002PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272011PMC
September 2012

TotalReCaller: improved accuracy and performance via integrated alignment and base-calling.

Bioinformatics 2011 Sep 30;27(17):2330-7. Epub 2011 Jun 30.

Computer Science Department, Courant Institute, New York University, NY 10012, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btr393DOI Listing
September 2011

Comparing de novo genome assembly: the long and short of it.

PLoS One 2011 Apr 29;6(4):e19175. Epub 2011 Apr 29.

Courant Institute of Mathematical Sciences, New York University, New York, New York, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019175PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3084767PMC
April 2011

Scoring-and-unfolding trimmed tree assembler: concepts, constructs and comparisons.

Bioinformatics 2011 Jan 18;27(2):153-60. Epub 2010 Nov 18.

Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btq646DOI Listing
January 2011

A novel approach to multihazard modeling and simulation.

Disaster Med Public Health Prep 2009 Jun;3(2):75-87

Department of Emergency Medicine, Bellevue Hospital Center, 462 First Ave, Room A345A, New York, NY 10016, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/DMP.0b013e3181a88899DOI Listing
June 2009

A multi-objective evolutionary approach to the protein structure prediction problem.

J R Soc Interface 2006 Feb;3(6):139-51

University of Catania, Department of Mathematics and Computer Science, V. le A. Doria 6, 95125 Catania, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1098/rsif.2005.0083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1629082PMC
February 2006