Publications by authors named "Giovanni Paternostro"

24Publications

Polled Digital Cell Sorter (p-DCS): Automatic identification of hematological cell types from single cell RNA-sequencing clusters.

BMC Bioinformatics 2019 Jul 1;20(1):369. Epub 2019 Jul 1.

Department of Physics and Astronomy, Michigan State University, East Lansing, MI, 48824, USA.

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July 2019

Cell cycle time series gene expression data encoded as cyclic attractors in Hopfield systems.

PLoS Comput Biol 2017 Nov 17;13(11):e1005849. Epub 2017 Nov 17.

Department of Physics and Astronomy, Michigan State University, East Lansing, Michigan, United States of America.

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November 2017

Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks.

PLoS Comput Biol 2016 06 30;12(6):e1005009. Epub 2016 Jun 30.

Department of Physics and Astronomy, Michigan State University, East Lansing, Michigan, United States of America.

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June 2016

Combinations of Kinase Inhibitors Protecting Myoblasts against Hypoxia.

PLoS One 2015 4;10(6):e0126718. Epub 2015 Jun 4.

Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.

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February 2016

Control of asymmetric Hopfield networks and application to cancer attractors.

PLoS One 2014 29;9(8):e105842. Epub 2014 Aug 29.

Department of Physics and Astronomy, Michigan State University, East Lansing, Michigan, United States of America; Salgomed Inc., Del Mar, California, United States of America.

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June 2015

Identification of drug combinations containing imatinib for treatment of BCR-ABL+ leukemias.

PLoS One 2014 16;9(7):e102221. Epub 2014 Jul 16.

Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.

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March 2015

Cellular protection using Flt3 and PI3Kα inhibitors demonstrates multiple mechanisms of oxidative glutamate toxicity.

Nat Commun 2014 Apr 17;5:3672. Epub 2014 Apr 17.

Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, California 92037, USA.

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April 2014

Metabolomics of the tumor microenvironment in pediatric acute lymphoblastic leukemia.

PLoS One 2013 13;8(12):e82859. Epub 2013 Dec 13.

Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.

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October 2014

Statistical properties and robustness of biological controller-target networks.

PLoS One 2012 3;7(1):e29374. Epub 2012 Jan 3.

Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.

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May 2012

Metabolomic high-content nuclear magnetic resonance-based drug screening of a kinase inhibitor library.

Nat Commun 2011 Nov 22;2:545. Epub 2011 Nov 22.

Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, California 92037, USA.

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November 2011

Systems approaches and algorithms for discovery of combinatorial therapies.

Wiley Interdiscip Rev Syst Biol Med 2010 Mar-Apr;2(2):181-193

Burnham Institute for Medical Research, San Diego, CA, USA.

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February 2011

Metabolism as means for hypoxia adaptation: metabolic profiling and flux balance analysis.

BMC Syst Biol 2009 Sep 9;3:91. Epub 2009 Sep 9.

Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA.

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September 2009

Discovering regulators of the Drosophila cardiac hypoxia response using automated phenotyping technology.

Ann N Y Acad Sci 2008 Mar;1123:169-77

Department of Bioengineering, University of California, San Diego, 9500 Gilman Drive, 0412, La Jolla, CA 92093-0412, USA.

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March 2008

Integrating metabolomics and phenomics with systems models of cardiac hypoxia.

Prog Biophys Mol Biol 2008 Jan-Apr;96(1-3):209-25. Epub 2007 Aug 10.

Department of Bioengineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

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May 2008

Selective control of the apoptosis signaling network in heterogeneous cell populations.

PLoS One 2007 Jun 20;2(6):e547. Epub 2007 Jun 20.

Burnham Institute for Medical Research, La Jolla, California, United States of America.

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June 2007