Giovanni Nigita

Giovanni Nigita

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Giovanni Nigita

Giovanni Nigita

Publications by authors named "Giovanni Nigita"

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28Publications

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isoTar: Consensus Target Prediction with Enrichment Analysis for MicroRNAs Harboring Editing Sites and Other Variations.

Methods Mol Biol 2019 ;1970:211-235

Division of Pulmonary Diseases and Critical Care Medicine, Virginia Commonwealth University, Richmond, VA, USA.

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http://dx.doi.org/10.1007/978-1-4939-9207-2_12DOI Listing
September 2019

Investigating miRNA-lncRNA Interactions: Computational Tools and Resources.

Methods Mol Biol 2019 ;1970:251-277

Department of Cancer Biology and Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1007/978-1-4939-9207-2_14DOI Listing
September 2019

ncRNA Editing: Functional Characterization and Computational Resources.

Methods Mol Biol 2019 ;1912:133-174

Department of Cancer Biology and Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1007/978-1-4939-8982-9_6DOI Listing
June 2019

WWOX Inhibits Metastasis of Triple-Negative Breast Cancer Cells via Modulation of miRNAs.

Cancer Res 2019 Apr 8;79(8):1784-1798. Epub 2019 Jan 8.

Lautenberg Center for Immunology and Cancer Research, Hebrew University-Hadassah Medical School, IMRIC, Jerusalem, Israel.

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http://dx.doi.org/10.1158/0008-5472.CAN-18-0614DOI Listing
April 2019

Editorial: Epitranscriptomics: The Novel RNA Frontier.

Front Bioeng Biotechnol 2018 4;6:191. Epub 2018 Dec 4.

Department of Cancer Biology and Genetics, The Ohio State University, Columbus, OH, United States.

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http://dx.doi.org/10.3389/fbioe.2018.00191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6288354PMC
December 2018

Tissue and exosomal miRNA editing in Non-Small Cell Lung Cancer.

Sci Rep 2018 07 5;8(1):10222. Epub 2018 Jul 5.

Division of Pulmonary Diseases and Critical Care Medicine, Virginia Commonwealth University, Richmond, VA, USA.

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http://dx.doi.org/10.1038/s41598-018-28528-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6033928PMC
July 2018

RNA Methylation in ncRNA: Classes, Detection, and Molecular Associations.

Front Genet 2018 12;9:243. Epub 2018 Jul 12.

Internal Medicine "Division of Pulmonary and Critical Care Medicine", Virginia Commonwealth University Health System, Richmond, VA, United States.

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http://dx.doi.org/10.3389/fgene.2018.00243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052889PMC
July 2018

Selective targeting of point-mutated KRAS through artificial microRNAs.

Proc Natl Acad Sci U S A 2017 05 8;114(21):E4203-E4212. Epub 2017 May 8.

Department of Cancer Biology and Genetics, College of Medicine, The Ohio State University, Columbus, OH 43210;

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http://dx.doi.org/10.1073/pnas.1620562114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5448175PMC
May 2017

Noncoding RNA: Current Deep Sequencing Data Analysis Approaches and Challenges.

Hum Mutat 2016 12 5;37(12):1283-1298. Epub 2016 Sep 5.

Department of Cancer Biology and Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio, 43210.

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http://dx.doi.org/10.1002/humu.23066DOI Listing
December 2016

microRNA editing in seed region aligns with cellular changes in hypoxic conditions.

Nucleic Acids Res 2016 07 13;44(13):6298-308. Epub 2016 Jun 13.

Department of Molecular Virology, Immunology and Medical Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA

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http://dx.doi.org/10.1093/nar/gkw532DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4994866PMC
July 2016

Dysregulation of a family of short noncoding RNAs, tsRNAs, in human cancer.

Proc Natl Acad Sci U S A 2016 May 11;113(18):5071-6. Epub 2016 Apr 11.

Department of Molecular Virology, Immunology and Medical Genetics, The Ohio State University, Columbus, OH 43210; Ohio State University Comprehensive Cancer Center, Columbus, OH 43210;

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http://www.pnas.org/content/113/18/5071.full.pdf
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http://dx.doi.org/10.1073/pnas.1604266113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4983805PMC
May 2016

Computational Approaches for the Analysis of ncRNA through Deep Sequencing Techniques.

Front Bioeng Biotechnol 2015 3;3:77. Epub 2015 Jun 3.

Department of Clinical and Molecular Biomedicine, University of Catania , Catania , Italy.

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http://journal.frontiersin.org/Article/10.3389/fbioe.2015.00
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http://dx.doi.org/10.3389/fbioe.2015.00077DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453482PMC
June 2015

A-to-I RNA Editing: Current Knowledge Sources and Computational Approaches with Special Emphasis on Non-Coding RNA Molecules.

Front Bioeng Biotechnol 2015 25;3:37. Epub 2015 Mar 25.

Department of Clinical and Molecular Biomedicine, University of Catania , Catania , Italy.

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http://dx.doi.org/10.3389/fbioe.2015.00037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373398PMC
April 2015

Knowledge in the Investigation of A-to-I RNA Editing Signals.

Front Bioeng Biotechnol 2015 24;3:18. Epub 2015 Feb 24.

Department of Clinical and Experimental Medicine, University of Catania , Catania , Italy.

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http://dx.doi.org/10.3389/fbioe.2015.00018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338823PMC
March 2015

VIRGO: visualization of A-to-I RNA editing sites in genomic sequences.

BMC Bioinformatics 2013 22;14 Suppl 7:S5. Epub 2013 Apr 22.

Department of Mathematics and Computer Science - University of Catania, Catania, Italy.

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http://dx.doi.org/10.1186/1471-2105-14-S7-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3837470PMC
December 2013

miR-EdiTar: a database of predicted A-to-I edited miRNA target sites.

Bioinformatics 2012 Dec 7;28(23):3166-8. Epub 2012 Oct 7.

Department of Molecular Virology, Immunology and Medical Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts589DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3509495PMC
December 2012