Giovanni Bussotti

Giovanni Bussotti

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Giovanni Bussotti

Giovanni Bussotti

Publications by authors named "Giovanni Bussotti"

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25Publications

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Targeting Macrophage Histone H3 Modification as a Leishmania Strategy to Dampen the NF-κB/NLRP3-Mediated Inflammatory Response.

Cell Rep 2020 Feb;30(6):1870-1882.e4

INSERM U1201, Unité de Parasitologie Moléculaire et Signalisation, Département des Parasites et Insectes Vecteurs, Institut Pasteur, 25 Rue du Dr Roux, 75015 Paris, France; Institut Pasteur International Mixed Unit "Inflammation and Leishmania infection," Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2020.01.030DOI Listing
February 2020

Trans-Atlantic Spill Over: Deconstructing the Ecological Adaptation of in the Americas.

Genes (Basel) 2019 12 19;11(1). Epub 2019 Dec 19.

Laboratory of Research on Leishmaniasis, Oswaldo Cruz Institute, FIOCRUZ, 21040-360 Rio de Janeiro, Brazil.

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http://dx.doi.org/10.3390/genes11010004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017240PMC
December 2019

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis.

Curr Biol 2018 11 1;28(22):3547-3561.e9. Epub 2018 Nov 1.

Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09609822183122
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http://dx.doi.org/10.1016/j.cub.2018.09.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6264527PMC
November 2018

Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani.

Nat Ecol Evol 2017 Dec 6;1(12):1961-1969. Epub 2017 Nov 6.

Institut Pasteur, INSERM U1201, Unité de Parasitologie Moléculaire et Signalisation, 75015, Paris, France.

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http://dx.doi.org/10.1038/s41559-017-0361-xDOI Listing
December 2017

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.

Nat Methods 2015 Apr 9;12(4):339-42. Epub 2015 Mar 9.

1] Garvan Institute of Medical Research, Sydney, Australia. [2] St Vincents Clinical School, Faculty of Medicine, University of New South Wales, Sydney, Australia.

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http://dx.doi.org/10.1038/nmeth.3321DOI Listing
April 2015

A comparative encyclopedia of DNA elements in the mouse genome.

Authors:
Feng Yue Yong Cheng Alessandra Breschi Jeff Vierstra Weisheng Wu Tyrone Ryba Richard Sandstrom Zhihai Ma Carrie Davis Benjamin D Pope Yin Shen Dmitri D Pervouchine Sarah Djebali Robert E Thurman Rajinder Kaul Eric Rynes Anthony Kirilusha Georgi K Marinov Brian A Williams Diane Trout Henry Amrhein Katherine Fisher-Aylor Igor Antoshechkin Gilberto DeSalvo Lei-Hoon See Meagan Fastuca Jorg Drenkow Chris Zaleski Alex Dobin Pablo Prieto Julien Lagarde Giovanni Bussotti Andrea Tanzer Olgert Denas Kanwei Li M A Bender Miaohua Zhang Rachel Byron Mark T Groudine David McCleary Long Pham Zhen Ye Samantha Kuan Lee Edsall Yi-Chieh Wu Matthew D Rasmussen Mukul S Bansal Manolis Kellis Cheryl A Keller Christapher S Morrissey Tejaswini Mishra Deepti Jain Nergiz Dogan Robert S Harris Philip Cayting Trupti Kawli Alan P Boyle Ghia Euskirchen Anshul Kundaje Shin Lin Yiing Lin Camden Jansen Venkat S Malladi Melissa S Cline Drew T Erickson Vanessa M Kirkup Katrina Learned Cricket A Sloan Kate R Rosenbloom Beatriz Lacerda de Sousa Kathryn Beal Miguel Pignatelli Paul Flicek Jin Lian Tamer Kahveci Dongwon Lee W James Kent Miguel Ramalho Santos Javier Herrero Cedric Notredame Audra Johnson Shinny Vong Kristen Lee Daniel Bates Fidencio Neri Morgan Diegel Theresa Canfield Peter J Sabo Matthew S Wilken Thomas A Reh Erika Giste Anthony Shafer Tanya Kutyavin Eric Haugen Douglas Dunn Alex P Reynolds Shane Neph Richard Humbert R Scott Hansen Marella De Bruijn Licia Selleri Alexander Rudensky Steven Josefowicz Robert Samstein Evan E Eichler Stuart H Orkin Dana Levasseur Thalia Papayannopoulou Kai-Hsin Chang Arthur Skoultchi Srikanta Gosh Christine Disteche Piper Treuting Yanli Wang Mitchell J Weiss Gerd A Blobel Xiaoyi Cao Sheng Zhong Ting Wang Peter J Good Rebecca F Lowdon Leslie B Adams Xiao-Qiao Zhou Michael J Pazin Elise A Feingold Barbara Wold James Taylor Ali Mortazavi Sherman M Weissman John A Stamatoyannopoulos Michael P Snyder Roderic Guigo Thomas R Gingeras David M Gilbert Ross C Hardison Michael A Beer Bing Ren

Nature 2014 Nov;515(7527):355-64

Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1038/nature13992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266106PMC
November 2014

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.

Nucleic Acids Res 2014 Jul 27;42(Web Server issue):W356-60. Epub 2014 Jun 27.

Comparative Bioinformatics, Bioinformatics and Genomics Program, Centre for Genomic Regulation (CRG), Dr Aiguader 88, 08003 Barcelona, Spain Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain

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http://dx.doi.org/10.1093/nar/gku459DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086076PMC
July 2014

T-Coffee: Tree-based consistency objective function for alignment evaluation.

Methods Mol Biol 2014 ;1079:117-29

Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Universitat Pompeu Fabra, Barcelona, Spain.

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http://dx.doi.org/10.1007/978-1-62703-646-7_7DOI Listing
May 2014

Detecting and comparing non-coding RNAs in the high-throughput era.

Int J Mol Sci 2013 Jul 24;14(8):15423-58. Epub 2013 Jul 24.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.3390/ijms140815423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3759867PMC
July 2013

Use of ChIP-Seq data for the design of a multiple promoter-alignment method.

Nucleic Acids Res 2012 Apr 9;40(7):e52. Epub 2012 Jan 9.

Bioinformatics and Genomics program, Centre for Genomic Regulation and UPF, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/nar/gkr1292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326335PMC
April 2012

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

Nat Protoc 2011 Nov;6(11):1669-82

Comparative Bioinformatics Group, Bioinformatics and Genomics Program, Centre for Genomic Regulation (CRG), Universitat Pompeu Fabra, Barcelona, Spain.

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http://dx.doi.org/10.1038/nprot.2011.393DOI Listing
November 2011

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq.

BMC Genomics 2011 Nov 8;12:552. Epub 2011 Nov 8.

Departament de Ciència Animal i dels Aliments, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain.

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http://dx.doi.org/10.1186/1471-2164-12-552DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3221674PMC
November 2011

BlastR--fast and accurate database searches for non-coding RNAs.

Nucleic Acids Res 2011 Sep 30;39(16):6886-95. Epub 2011 May 30.

Bioinformatics and Genomics program, Center for Genomic Regulation (CRG) and UPF, Barcelona, C/ D. Aiguader, 88, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/nar/gkr335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3167602PMC
September 2011

The MoVIN server for the analysis of protein interaction networks.

BMC Bioinformatics 2008 Mar 26;9 Suppl 2:S11. Epub 2008 Mar 26.

Department of Biochemical Sciences, "Sapienza" University, Rome, Italy.

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http://dx.doi.org/10.1186/1471-2105-9-S2-S11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323660PMC
March 2008