Gintaras Deikus

Gintaras Deikus

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Gintaras Deikus

Gintaras Deikus

Publications by authors named "Gintaras Deikus"

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38Publications

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A comparison of immunoglobulin IGHV, IGHD and IGHJ genes in wild-derived and classical inbred mouse strains.

Immunol Cell Biol 2019 Aug 23. Epub 2019 Aug 23.

School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, 2052, Australia.

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http://dx.doi.org/10.1111/imcb.12288DOI Listing
August 2019

Mce3R Stress-Resistance Pathway Is Vulnerable to Small-Molecule Targeting That Improves Tuberculosis Drug Activities.

ACS Infect Dis 2019 Jul 3;5(7):1239-1251. Epub 2019 May 3.

Department of Chemistry , Stony Brook University , 100 John S. Toll Drive , Stony Brook , New York 11794-3400 , United States.

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http://dx.doi.org/10.1021/acsinfecdis.9b00099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6630528PMC
July 2019

High-coverage, long-read sequencing of Han Chinese trio reference samples.

Sci Data 2019 06 14;6(1):91. Epub 2019 Jun 14.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1 Gustave L Levy Pl, New York, NY, 10029, USA.

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http://dx.doi.org/10.1038/s41597-019-0098-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572837PMC
June 2019

Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing.

Genome Res 2018 07 15;28(7):1067-1078. Epub 2018 May 15.

Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA.

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http://dx.doi.org/10.1101/gr.231068.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028124PMC
July 2018

Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.

Nat Biotechnol 2018 01 11;36(1):61-69. Epub 2017 Dec 11.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

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http://dx.doi.org/10.1038/nbt.4037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5762413PMC
January 2018

Capturing pairwise and multi-way chromosomal conformations using chromosomal walks.

Nature 2016 12 30;540(7632):296-300. Epub 2016 Nov 30.

Department of Computer Science and Applied Mathematics and Department of Biological Regulation, Weizmann Institute, Rehovot 76100, Israel.

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http://dx.doi.org/10.1038/nature20158DOI Listing
December 2016

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193.

Genome Announc 2016 Jan 28;4(1). Epub 2016 Jan 28.

Division of Infectious Diseases and International Health, Department of Medicine, University of Virginia Health System, Charlottesville, Virginia, USA Clinical Microbiology, Department of Pathology, University of Virginia Health System, Charlottesville, Virginia, USA

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http://dx.doi.org/10.1128/genomeA.01649-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4732343PMC
January 2016

Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America.

J Infect Dis 2015 Dec 5;212(12):1874-82. Epub 2015 Jun 5.

Division of Infectious Diseases, Department of Internal Medicine Department of Microbiology and Molecular Genetics, University of Texas Medical School at Houston Molecular Genetics and Antimicrobial Resistance Unit, International Center for Microbial Genomics, Universidad El Bosque, Bogotá, Colombia.

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http://dx.doi.org/10.1093/infdis/jiv320DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4655856PMC
December 2015

Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes.

Nat Commun 2015 Jun 15;6:7438. Epub 2015 Jun 15.

Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.

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http://dx.doi.org/10.1038/ncomms8438DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4490391PMC
June 2015

Global analysis of mRNA decay intermediates in Bacillus subtilis wild-type and polynucleotide phosphorylase-deletion strains.

Mol Microbiol 2014 Oct 21;94(1):41-55. Epub 2014 Aug 21.

Department of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, Box 1603, New York, NY, 10029, USA.

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http://dx.doi.org/10.1111/mmi.12748DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177450PMC
October 2014

Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element.

Mol Microbiol 2014 Aug 16;93(4):664-81. Epub 2014 Jul 16.

Department of Microbiology, New York University School of Medicine, New York, NY, USA; Division of Infectious Diseases, Boston Children's Hospital, Boston, MA, USA.

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http://dx.doi.org/10.1111/mmi.12682DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4127135PMC
August 2014

5' End-independent RNase J1 endonuclease cleavage of Bacillus subtilis model RNA.

J Biol Chem 2011 Oct 23;286(40):34932-40. Epub 2011 Aug 23.

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, New York 10029-6574, USA.

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http://dx.doi.org/10.1074/jbc.M111.287409DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3186403PMC
October 2011

Bacillus subtilis trp Leader RNA: RNase J1 endonuclease cleavage specificity and PNPase processing.

J Biol Chem 2009 Sep 28;284(39):26394-401. Epub 2009 Jul 28.

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine of New York University, New York, New York 10029-6574, USA.

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http://dx.doi.org/10.1074/jbc.M109.015875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785327PMC
September 2009

Bacillus subtilis polynucleotide phosphorylase 3'-to-5' DNase activity is involved in DNA repair.

Nucleic Acids Res 2009 Jul 11;37(12):4157-69. Epub 2009 May 11.

Department of Microbial Biotechnology, Centro Nacional de Biotecnología, CSIC, C/Darwin 3, Campus Universidad Autónoma de Madrid, 28049 Madrid, Spain.

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http://dx.doi.org/10.1093/nar/gkp314DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2709576PMC
July 2009

Analysis of mRNA decay in Bacillus subtilis.

Methods Enzymol 2008 ;447:259-76

Mount Sinai School of Medicine of New York University, Department of Pharmacology and Systems Therapeutics, New York, USA.

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http://dx.doi.org/10.1016/S0076-6879(08)02214-3DOI Listing
March 2009

Assay of Bacillus subtilis ribonucleases in vitro.

Methods Enzymol 2008 ;447:277-308

CNRS UPR 9073 (affiliated with Université de Paris 7; Denis Diderot), Institut de Biologie Physico-Chimique, Paris, France.

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http://linkinghub.elsevier.com/retrieve/pii/S007668790802215
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http://dx.doi.org/10.1016/S0076-6879(08)02215-5DOI Listing
March 2009

Role of Bacillus subtilis RNase J1 endonuclease and 5'-exonuclease activities in trp leader RNA turnover.

J Biol Chem 2008 Jun 29;283(25):17158-67. Epub 2008 Apr 29.

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine of New York University, New York, New York 10029, USA.

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http://dx.doi.org/10.1074/jbc.M801461200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427345PMC
June 2008

Initiation of decay of Bacillus subtilis trp leader RNA.

J Biol Chem 2007 Jul 16;282(28):20238-44. Epub 2007 May 16.

Department of Pharmacology and Biological Chemistry, Mount Sinai School of Medicine of New York University, New York, NY 10029, USA.

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http://dx.doi.org/10.1074/jbc.M702747200DOI Listing
July 2007

Adaptive gene expression in Bacillus subtilis strains deleted for tetL.

J Bacteriol 2006 Oct;188(20):7090-100

Department of Pharmacology and Biological Chemistry, Box 1603, Mount Sinai School of Medicine of New York University, New York, NY 10029, USA.

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http://dx.doi.org/10.1128/JB.00885-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1636236PMC
October 2006

Structural dynamics of the manganese-stabilizing protein-effect of pH, calcium, and manganese.

Biochemistry 2005 Nov;44(46):15182-92

Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-901 87 Umeå, Sweden.

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http://dx.doi.org/10.1021/bi0512750DOI Listing
November 2005

Recycling of a regulatory protein by degradation of the RNA to which it binds.

Proc Natl Acad Sci U S A 2004 Mar 19;101(9):2747-51. Epub 2004 Feb 19.

Department of Pharmacology and Biological Chemistry, Mount Sinai School of Medicine, New York University, New York, NY 10029, USA.

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http://dx.doi.org/10.1073/pnas.0307343101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC365692PMC
March 2004

Ultraviolet illumination-induced reduction of alpha-lactalbumin disulfide bridges.

Proteins 2003 Jun;51(4):498-503

Institute for Biological Instrumentation of the Russian Academy of Sciences, Pushchino, Moscow region 142290, Russia.

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http://dx.doi.org/10.1002/prot.10371DOI Listing
June 2003

Constrained analysis of fluorescence anisotropy decay:application to experimental protein dynamics.

Biophys J 2003 Jan;84(1):599-611

Department of Pharmacology and Biological Chemistry, Mount Sinai School of Medicine, New York, New York 10029, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1302641PMC
http://dx.doi.org/10.1016/S0006-3495(03)74880-2DOI Listing
January 2003