Georgios V Gkoutos

Georgios V Gkoutos

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Georgios V Gkoutos

Georgios V Gkoutos

Publications by authors named "Georgios V Gkoutos"

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A Practical Guide to Assess the Reproducibility of Echocardiographic Measurements.

J Am Soc Echocardiogr 2019 Dec 22;32(12):1505-1515. Epub 2019 Oct 22.

Institute of Cardiovascular Sciences, University of Birmingham, Birmingham, United Kingdom; University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.echo.2019.08.015DOI Listing
December 2019

Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction.

Sci Data 2019 12 19;6(1):328. Epub 2019 Dec 19.

NIHR Surgical Reconstruction and Microbiology Research Centre, University Hospital Birmingham, Birmingham, B15 2WB, UK.

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http://dx.doi.org/10.1038/s41597-019-0337-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6923383PMC
December 2019

Allergic diseases and long-term risk of autoimmune disorders: longitudinal cohort study and cluster analysis.

Eur Respir J 2019 Nov 14;54(5). Epub 2019 Nov 14.

Institute of Applied Health Research, University of Birmingham, Birmingham, UK.

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http://dx.doi.org/10.1183/13993003.00476-2019DOI Listing
November 2019

Ontology-based prediction of cancer driver genes.

Sci Rep 2019 Nov 22;9(1):17405. Epub 2019 Nov 22.

Computer, Electrical and Mathematical Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.

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http://dx.doi.org/10.1038/s41598-019-53454-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874647PMC
November 2019

Annotating and detecting phenotypic information for chronic obstructive pulmonary disease.

JAMIA Open 2019 Jul 26;2(2):261-271. Epub 2019 Apr 26.

National Centre for Text Mining, School of Computer Science, The University of Manchester, Manchester, UK.

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http://dx.doi.org/10.1093/jamiaopen/ooz009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6951876PMC
July 2019

-Omics biomarker identification pipeline for translational medicine.

J Transl Med 2019 05 14;17(1):155. Epub 2019 May 14.

College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences, Centre for Computational Biology, University of Birmingham, Birmingham, B15 2TT, UK.

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https://translational-medicine.biomedcentral.com/articles/10
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http://dx.doi.org/10.1186/s12967-019-1912-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6518609PMC
May 2019

DeepPVP: phenotype-based prioritization of causative variants using deep learning.

BMC Bioinformatics 2019 Feb 6;20(1):65. Epub 2019 Feb 6.

Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Kingdom of Saudi Arabia.

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http://dx.doi.org/10.1186/s12859-019-2633-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364462PMC
February 2019

A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals.

ILAR J 2018 12;59(1):29-39

Susan A. Elmore, MS, DVM, DCVP, DABT, FIATP, is NTP Pathologist and Staff Scientist at the National Toxicology Program, National Institute of Environmental Health Sciences in the Research Triangle Park, North Carolina. Robert D. Cardiff, MD, PhD, is Distinguished Professor of Pathology, Emeritus at the UCD Center for Comparative Medicine, University of California, and the Department of Pathology and Laboratory Medicine, School of Medicine, Davis, in Davis, California. Mark F. Cesta, DVM, PhD, DACVP, is NTP Pathologist and Staff Scientist, leading the effort for establishment of the online NTP Nonneoplastic Lesion Atlas at the National Toxicology Program, National Institute of Environmental Health Sciences in the Research Triangle Park, North Carolina. Georgios V. Gkoutos, PhD, DIC, is Professor of Clinical Bioinformatics at College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences Centre for Computational Biology, University of Birmingham in Birmingham, United Kingdom. Robert Hoehndorf, PhD, is Assistant Professor in Computer Science at the Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology in Thuwal, Kingdom of Saudi Arabia. Charlotte M. Keenan, VMD, DACVP, is a principle consultant at C.M. ToxPath Consulting in Doylestown, Pennsylvania, USA and leads the international STP effort for the publication of the harmonization of nomenclature and diagnostic criteria (INHAND) in toxicologic pathology. Colin McKerlie, DVM, DVSc, MRCVS, is a senior associate scientist in the Translational Medicine Research Program at The Hospital for Sick Children and a Professor in the Department of Pathobiology & Laboratory Medicine in the Faculty of Medicine at the University of Toronto, Toronto, Ontario, Canada. Paul N. Schofield, MA DPhil, is the University Reader in Biomedical Informatics at the Department of Physiology, Development & Neuroscience, University of Cambridge in Cambridge, United Kingdom and is also an adjunct professor at The Jackson Laboratory in Bar Harbor, Maine. John P. Sundberg, DVM, PhD, DACVP, is a professor at The Jackson Laboratory in Bar Harbor, Maine. Jerrold M. Ward, DVM, PhD, DACVP, FIATP, is a special volunteer at the National Cancer Institute, National Institutes of Health in Bethesda, MD and is also Adjunct Faculty at The Jackson Laboratory in Bar Harbor, Maine.

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http://dx.doi.org/10.1093/ilar/ily005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6927895PMC
December 2018

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants.

Sci Rep 2018 10 2;8(1):14681. Epub 2018 Oct 2.

Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

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http://www.nature.com/articles/s41598-018-32876-3
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http://dx.doi.org/10.1038/s41598-018-32876-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6168481PMC
October 2018

The anatomy of phenotype ontologies: principles, properties and applications.

Brief Bioinform 2018 09;19(5):1008-1021

Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, King Abdullah University of Science and Technology, Thuwal.

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http://dx.doi.org/10.1093/bib/bbx035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6169674PMC
September 2018

Ontology-based validation and identification of regulatory phenotypes.

Bioinformatics 2018 09;34(17):i857-i865

Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Centre, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

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https://academic.oup.com/bioinformatics/article/34/17/i857/5
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http://dx.doi.org/10.1093/bioinformatics/bty605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6129279PMC
September 2018

Datamining with Ontologies.

Methods Mol Biol 2016 ;1415:385-97

Department of Physiology, Development & Neuroscience, University of Cambridge, Downing Street, Cambridge, CB2 3EG, UK.

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http://dx.doi.org/10.1007/978-1-4939-3572-7_19DOI Listing
December 2017

Integrating phenotype ontologies with PhenomeNET.

J Biomed Semantics 2017 Dec 19;8(1):58. Epub 2017 Dec 19.

Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia.

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http://dx.doi.org/10.1186/s13326-017-0167-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5735523PMC
December 2017

Semantic prioritization of novel causative genomic variants.

PLoS Comput Biol 2017 04 17;13(4):e1005500. Epub 2017 Apr 17.

King Abdullah University of Science and Technology, Computer, Electrical & Mathematical Sciences and Engineering Division, Computational Bioscience Research Center, Thuwal, Saudi Arabia.

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http://dx.doi.org/10.1371/journal.pcbi.1005500DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411092PMC
April 2017

Using AberOWL for fast and scalable reasoning over BioPortal ontologies.

J Biomed Semantics 2016 08 8;7(1):49. Epub 2016 Aug 8.

Computational Bioscience Research Center, Computer, Electrical and Mathematical Sciences & Engineering Division, King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia.

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http://dx.doi.org/10.1186/s13326-016-0090-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4976511PMC
August 2016

DermO; an ontology for the description of dermatologic disease.

J Biomed Semantics 2016 Jun 13;7:38. Epub 2016 Jun 13.

Dept. of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge, CB2 3EG, UK.

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http://dx.doi.org/10.1186/s13326-016-0085-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907256PMC
June 2016

Best behaviour? Ontologies and the formal description of animal behaviour.

Mamm Genome 2015 Oct 28;26(9-10):540-7. Epub 2015 Jul 28.

Department of Physiology Development and Neuroscience, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1007/s00335-015-9590-yDOI Listing
October 2015

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases.

Sci Rep 2015 Jun 8;5:10888. Epub 2015 Jun 8.

Department of Computer Science, Aberystwyth University, Llandinam Building, Aberystwyth, SY23 3DB, UK.

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http://dx.doi.org/10.1038/srep10888DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4458913PMC
June 2015

Similarity-based search of model organism, disease and drug effect phenotypes.

J Biomed Semantics 2015 19;6. Epub 2015 Feb 19.

Department of Computer Science, Aberystwyth University, Llandinam Building, Aberystwyth, SY23 3DB UK.

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http://dx.doi.org/10.1186/s13326-015-0001-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4355138PMC
March 2015

Aber-OWL: a framework for ontology-based data access in biology.

BMC Bioinformatics 2015 Jan 28;16:26. Epub 2015 Jan 28.

Department of Computer Science, Aberystwyth University, Llandinam Building, Aberystwyth, SY23 3DB, UK.

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http://dx.doi.org/10.1186/s12859-015-0456-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384359PMC
January 2015

Mouse model phenotypes provide information about human drug targets.

Bioinformatics 2014 Mar 24;30(5):719-25. Epub 2013 Oct 24.

Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth SY23 2AX, Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada and Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3EG, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btt613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933875PMC
March 2014

Analyzing gene expression data in mice with the Neuro Behavior Ontology.

Mamm Genome 2014 Feb 1;25(1-2):32-40. Epub 2013 Nov 1.

Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth, SY23 2AX, UK,

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http://dx.doi.org/10.1007/s00335-013-9481-zDOI Listing
February 2014

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Nucleic Acids Res 2014 Jan 11;42(Database issue):D966-74. Epub 2013 Nov 11.

Institute for Medical Genetics and Human Genetics, Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany, Berlin-Brandenburg Center for Regenerative Therapies, Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany, Lawrence Berkeley National Laboratory, Mail Stop 84R0171, Berkeley, CA 94720, USA, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK, Department of Medical Genetics, Cambridge University Addenbrooke's Hospital, Cambridge CB2 2QQ, UK, Université Paul Sabatier, Faculté de Chirurgie Dentaire, CHU Toulouse, France, Centre for Genomic Medicine, Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Sciences Centre (MAHSC), Manchester, UK, Centre for Genomic Medicine, Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, MAHSC, Manchester M13 9WL, UK, Institute of Genetic Medicine. Newcastle University, Central Parkway, Newcastle upon Tyne, NE1 3BZ, UK, Department of Computer Science, University of Toronto, Ontario, Canada, Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada, Department of Clinical Genetics, Leeds Teaching Hospitals NHS Trust, Leeds LS2 9NS, UK, MRC Human Genetics Unit, MRC Institute of Genetic and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK, The Jackson Laboratory, Bar Harbor, ME 04609, USA, Center for Molecular and Vascular Biology, University of Leuven, Belgium, Department of Neuropediatrics, University Medical Center Schleswig-Holstein, Kiel Campus, 24105 Kiel, Germany, NE Thames Genetics Service, Great Ormond Street Hospital, London WC1N 3JH, UK, Drexel University College of Medicine, Philadelphia, PA 19102, USA, Department of Haematology, University of Cambridge and NHS Blood and Transplant Cambridge, CB2 0PT Cambridge, UK, Autism and Developmental Medicine Institute, Geisinger Health System

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http://dx.doi.org/10.1093/nar/gkt1026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965098PMC
January 2014

Linking PharmGKB to phenotype studies and animal models of disease for drug repurposing.

Pac Symp Biocomput 2012 :388-99

Department of Genetics, University of Cambridge, Cambridge, UK.

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December 2013

Evaluation of research in biomedical ontologies.

Brief Bioinform 2013 Nov 8;14(6):696-712. Epub 2012 Sep 8.

Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK.

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http://bib.oxfordjournals.org/content/14/6/696.full.pdf
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http://bib.oxfordjournals.org/cgi/doi/10.1093/bib/bbs053
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http://dx.doi.org/10.1093/bib/bbs053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3888109PMC
November 2013

Systematic analysis of experimental phenotype data reveals gene functions.

PLoS One 2013 16;8(4):e60847. Epub 2013 Apr 16.

Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060847PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3628905PMC
November 2013

The Drosophila phenotype ontology.

J Biomed Semantics 2013 Oct 18;4(1):30. Epub 2013 Oct 18.

FlyBase, Department of Genetics, University of Cambridge, Downing Street, Cambridge, UK.

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http://dx.doi.org/10.1186/2041-1480-4-30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3816596PMC
October 2013

The mouse pathology ontology, MPATH; structure and applications.

J Biomed Semantics 2013 Sep 13;4(1):18. Epub 2013 Sep 13.

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, CB2 3EG, Cambridge, UK.

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http://dx.doi.org/10.1186/2041-1480-4-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3851164PMC
September 2013

The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes.

Int Rev Neurobiol 2012 ;103:69-87

Department of Genetics, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1016/B978-0-12-388408-4.00004-6DOI Listing
May 2013

The Units Ontology: a tool for integrating units of measurement in science.

Database (Oxford) 2012 10;2012:bas033. Epub 2012 Oct 10.

Department of Computer Science, University of Aberystwyth, Old College, King Street, SY23 2AX.

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https://academic.oup.com/database/article-lookup/doi/10.1093
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http://dx.doi.org/10.1093/database/bas033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3468815PMC
April 2013

Representing physiological processes and their participants with PhysioMaps.

J Biomed Semantics 2013 Apr 15;4 Suppl 1:S2. Epub 2013 Apr 15.

Biomedical & Health Informatics, Univ, of Washington, USA.

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http://dx.doi.org/10.1186/2041-1480-4-S1-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3632997PMC
April 2013

An integrative, translational approach to understanding rare and orphan genetically based diseases.

Interface Focus 2013 Apr;3(2):20120055

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3EG, UK ; Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth SY23 2AX, UK.

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http://rsfs.royalsocietypublishing.org/content/royfocus/3/2/
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http://rsfs.royalsocietypublishing.org/cgi/doi/10.1098/rsfs.
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http://dx.doi.org/10.1098/rsfs.2012.0055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638468PMC
April 2013

Computational tools for comparative phenomics: the role and promise of ontologies.

Mamm Genome 2012 Oct 20;23(9-10):669-79. Epub 2012 Jul 20.

Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1007/s00335-012-9404-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488439PMC
October 2012

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology.

J Biomed Semantics 2012 Sep 21;3 Suppl 2:S1. Epub 2012 Sep 21.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.

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http://dx.doi.org/10.1186/2041-1480-3-S2-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3448526PMC
September 2012

Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes.

J Biomed Semantics 2012 Sep 21;3 Suppl 2:S6. Epub 2012 Sep 21.

Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1186/2041-1480-3-S2-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3448529PMC
September 2012

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics.

Bioinformatics 2012 Aug 17;28(16):2169-75. Epub 2012 Jun 17.

Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1093/bioinformatics/bts350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3493115PMC
August 2012

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology.

Bioinformatics 2012 Jul 26;28(13):1783-9. Epub 2012 Apr 26.

Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1093/bioinformatics/bts250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381966PMC
July 2012

MouseFinder: Candidate disease genes from mouse phenotype data.

Hum Mutat 2012 May 16;33(5):858-66. Epub 2012 Mar 16.

Vertebrate Genomics Team, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://doi.wiley.com/10.1002/humu.22051
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http://dx.doi.org/10.1002/humu.22051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3327758PMC
May 2012

Mouse genetic and phenotypic resources for human genetics.

Hum Mutat 2012 May;33(5):826-36

Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom.

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http://dx.doi.org/10.1002/humu.22077DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3473354PMC
May 2012

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study.

Bioinformatics 2012 Feb 29;28(3):448-50. Epub 2011 Nov 29.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btr662DOI Listing
February 2012

Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice.

Dis Model Mech 2012 Jan 25;5(1):19-25. Epub 2011 Oct 25.

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge, CB2 3EG, UK.

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http://dmm.biologists.org/cgi/doi/10.1242/dmm.008334
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http://dx.doi.org/10.1242/dmm.008334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3255539PMC
January 2012

Uberon, an integrative multi-species anatomy ontology.

Genome Biol 2012 Jan 31;13(1):R5. Epub 2012 Jan 31.

Genomics Division, Lawrence Berkeley National Laboratory, 1 Cycltotron Road MS 64-121, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1186/gb-2012-13-1-r5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334586PMC
January 2012

PIDO: the primary immunodeficiency disease ontology.

Bioinformatics 2011 Nov 22;27(22):3193-9. Epub 2011 Sep 22.

Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1093/bioinformatics/btr531DOI Listing
November 2011

PhenomeNET: a whole-phenome approach to disease gene discovery.

Nucleic Acids Res 2011 Oct 6;39(18):e119. Epub 2011 Jul 6.

Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EG, UK.

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http://dx.doi.org/10.1093/nar/gkr538DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185433PMC
October 2011

Improving ontologies by automatic reasoning and evaluation of logical definitions.

BMC Bioinformatics 2011 Oct 27;12:418. Epub 2011 Oct 27.

Institute for Medical Genetics and Human Genetics, Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany.

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http://dx.doi.org/10.1186/1471-2105-12-418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224779PMC
October 2011

Integrating systems biology models and biomedical ontologies.

BMC Syst Biol 2011 Aug 11;5:124. Epub 2011 Aug 11.

Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.

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http://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0
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http://dx.doi.org/10.1186/1752-0509-5-124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170340PMC
August 2011

Phenotype ontologies for mouse and man: bridging the semantic gap.

Dis Model Mech 2010 May-Jun;3(5-6):281-9

Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1242/dmm.002790DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860848PMC
September 2010

Entity/quality-based logical definitions for the human skeletal phenome using PATO.

Conf Proc IEEE Eng Med Biol Soc 2009 ;2009:7069-72

Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, England.

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http://dx.doi.org/10.1109/IEMBS.2009.5333362DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398700PMC
April 2010

Integrating phenotype ontologies across multiple species.

Genome Biol 2010 Jan 8;11(1):R2. Epub 2010 Jan 8.

Genome Dynamics Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1186/gb-2010-11-1-r2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847714PMC
January 2010

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease.

Mamm Genome 2009 Aug 2;20(8):457-61. Epub 2009 Aug 2.

Bioinformatics Group, MRC Harwell, Harwell, Oxfordshire, OX11 0RD, UK.

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http://dx.doi.org/10.1007/s00335-009-9208-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759022PMC
August 2009

Phenotype ontologies: the bridge between genomics and evolution.

Trends Ecol Evol 2007 Jul 9;22(7):345-50. Epub 2007 Apr 9.

Department of Biology, University of South Dakota, Vermillion, SD 57069, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S016953470700104
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http://dx.doi.org/10.1016/j.tree.2007.03.013DOI Listing
July 2007

Using ontologies to describe mouse phenotypes.

Genome Biol 2005 20;6(1):R8. Epub 2004 Dec 20.

Bioinformatics Group, MRC Mammalian Genetics Unit, Harwell, Oxfordshire, OX11 0RD, UK.

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http://dx.doi.org/10.1186/gb-2004-6-1-r8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC549069PMC
October 2005

EMPReSS: European mouse phenotyping resource for standardized screens.

Bioinformatics 2005 Jun 12;21(12):2930-1. Epub 2005 Apr 12.

MRC Mammalian Genetics Unit, Harwell, Oxfordshire OX11 0RD, UK.

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http://dx.doi.org/10.1093/bioinformatics/bti441DOI Listing
June 2005

CRAVE: a database, middleware and visualization system for phenotype ontologies.

Bioinformatics 2005 Apr 18;21(7):1257-62. Epub 2004 Nov 18.

Bioinformatics Group, MRC Mammalian Genetics Unit, Harwell, Oxfordshire OX11 0RD, UK.

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http://dx.doi.org/10.1093/bioinformatics/bti147DOI Listing
April 2005

Chemical machine vision: automated extraction of chemical metadata from raster images.

J Chem Inf Comput Sci 2003 Sep-Oct;43(5):1342-55

Department of Chemistry, Imperial College of Science, Technology & Medicine, Exhibition Road, South Kensington, London, England SW7 2AY.

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http://pubs.acs.org/doi/abs/10.1021/ci034017n
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July 2004