Georgi K Marinov

Georgi K Marinov

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Georgi K Marinov

Georgi K Marinov

Publications by authors named "Georgi K Marinov"

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Response to Martin and colleagues: mitochondria do not boost the bioenergetic capacity of eukaryotic cells.

Biol Direct 2018 11 29;13(1):26. Epub 2018 Nov 29.

Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.

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http://dx.doi.org/10.1186/s13062-018-0228-3DOI Listing
November 2018

Author Correction: An NF-κB-microRNA regulatory network tunes macrophage inflammatory responses.

Nat Commun 2018 08 16;9(1):3338. Epub 2018 Aug 16.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.

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http://www.nature.com/articles/s41467-018-05720-5
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http://dx.doi.org/10.1038/s41467-018-05720-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6095848PMC
August 2018

A decade of ChIP-seq.

Authors:
Georgi K Marinov

Brief Funct Genomics 2018 03;17(2):77-79

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5101.

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http://dx.doi.org/10.1093/bfgp/ely012DOI Listing
March 2018

ChIP-seq for the Identification of Functional Elements in the Human Genome.

Authors:
Georgi K Marinov

Methods Mol Biol 2017 ;1543:3-18

Department of Biology, Indiana University, Bloomington, IN, 47405, USA.

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http://dx.doi.org/10.1007/978-1-4939-6716-2_1DOI Listing
February 2018

Identification of Candidate Functional Elements in the Genome from ChIP-seq Data.

Authors:
Georgi K Marinov

Methods Mol Biol 2017 ;1543:19-43

Department of Biology, Indiana University, Bloomington, IN, 47405, USA.

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http://dx.doi.org/10.1007/978-1-4939-6716-2_2DOI Listing
February 2018

On the design and prospects of direct RNA sequencing.

Authors:
Georgi K Marinov

Brief Funct Genomics 2017 Nov;16(6):326-335

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http://dx.doi.org/10.1093/bfgp/elw043DOI Listing
November 2017

An NF-κB-microRNA regulatory network tunes macrophage inflammatory responses.

Nat Commun 2017 10 11;8(1):851. Epub 2017 Oct 11.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.

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http://dx.doi.org/10.1038/s41467-017-00972-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5636846PMC
October 2017

SLC7A11 Overexpression in Glioblastoma Is Associated with Increased Cancer Stem Cell-Like Properties.

Stem Cells Dev 2017 09 27;26(17):1236-1246. Epub 2017 Jul 27.

1 Department of Developmental and Stem Cell Biology, City of Hope National Medical Center and Beckman Research Institute , Duarte, California.

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http://dx.doi.org/10.1089/scd.2017.0123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576215PMC
September 2017

Transcriptomic analysis of the role of RasGEF1B circular RNA in the TLR4/LPS pathway.

Sci Rep 2017 09 25;7(1):12227. Epub 2017 Sep 25.

Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, 50603, Malaysia.

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http://dx.doi.org/10.1038/s41598-017-12550-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5612941PMC
September 2017

Population Genomics of Paramecium Species.

Mol Biol Evol 2017 05;34(5):1194-1216

Department of Biology, Indiana University, Bloomington, IN.

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http://dx.doi.org/10.1093/molbev/msx074DOI Listing
May 2017

Membranes, energetics, and evolution across the prokaryote-eukaryote divide.

Elife 2017 03 16;6. Epub 2017 Mar 16.

Department of Biology, Indiana University, Bloomington, United States.

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http://dx.doi.org/10.7554/eLife.20437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5354521PMC
March 2017

Increased Expression of System xc- in Glioblastoma Confers an Altered Metabolic State and Temozolomide Resistance.

Mol Cancer Res 2016 12 22;14(12):1229-1242. Epub 2016 Sep 22.

Department of Neurosciences, City of Hope National Medical Center and Beckman Research Institute, Duarte, California.

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http://dx.doi.org/10.1158/1541-7786.MCR-16-0028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237285PMC
December 2016

Splicing-independent loading of TREX on nascent RNA is required for efficient expression of dual-strand piRNA clusters in Drosophila.

Genes Dev 2016 Apr;30(7):840-55

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA;

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http://dx.doi.org/10.1101/gad.276030.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4826399PMC
April 2016

Conservation and divergence of the histone code in nucleomorphs.

Biol Direct 2016 Apr 5;11(1):18. Epub 2016 Apr 5.

Department of Biology, Indiana University, Bloomington, 47405, IN, United States.

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http://dx.doi.org/10.1186/s13062-016-0119-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822330PMC
April 2016

Reply to Lane and Martin: Mitochondria do not boost the bioenergetic capacity of eukaryotic cells.

Proc Natl Acad Sci U S A 2016 Feb 25;113(6):E667-8. Epub 2016 Jan 25.

Department of Biology, Indiana University, Bloomington, IN 47401.

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http://dx.doi.org/10.1073/pnas.1523394113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4760791PMC
February 2016

Draft Whole-Genome Sequence of Haemophilus ducreyi Strain AUSPNG1, Isolated from a Cutaneous Ulcer of a Child from Papua New Guinea.

Genome Announc 2016 Feb 4;4(1). Epub 2016 Feb 4.

Department of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, Indiana, USA Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA Department of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA Center for Immunobiology, Indiana University School of Medicine, Indianapolis, Indiana, USA

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http://genomea.asm.org/lookup/doi/10.1128/genomeA.01661-15
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http://dx.doi.org/10.1128/genomeA.01661-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4742684PMC
February 2016

The bioenergetic costs of a gene.

Proc Natl Acad Sci U S A 2015 Dec 2;112(51):15690-5. Epub 2015 Nov 2.

Department of Biology, Indiana University, Bloomington, IN 47401.

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http://dx.doi.org/10.1073/pnas.1514974112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4697398PMC
December 2015

Diversity and Divergence of Dinoflagellate Histone Proteins.

G3 (Bethesda) 2015 Dec 8;6(2):397-422. Epub 2015 Dec 8.

Department of Biology, Indiana University, Bloomington, Indiana 47405.

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http://dx.doi.org/10.1534/g3.115.023275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751559PMC
December 2015

The microRNA-212/132 cluster regulates B cell development by targeting Sox4.

J Exp Med 2015 Sep 14;212(10):1679-92. Epub 2015 Sep 14.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125

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http://dx.doi.org/10.1084/jem.20150489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4577845PMC
September 2015

MIWI2 and MILI Have Differential Effects on piRNA Biogenesis and DNA Methylation.

Cell Rep 2015 Aug 13;12(8):1234-43. Epub 2015 Aug 13.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.07.036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4554733PMC
August 2015

The elephant in the room: Advertising science as a driver of economic growth is a long-term losing strategy.

Authors:
Georgi K Marinov

EMBO Rep 2015 Apr 5;16(4):399-403. Epub 2015 Mar 5.

California Institute of Technology, Pasadena, CA, USA.

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http://dx.doi.org/10.15252/embr.201439824DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4388605PMC
April 2015

Genome Sequence of Magnetospirillum magnetotacticum Strain MS-1.

Genome Announc 2015 Apr 2;3(2). Epub 2015 Apr 2.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA

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http://dx.doi.org/10.1128/genomeA.00233-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384492PMC
April 2015

Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.

Cell Stem Cell 2015 Jan;16(1):88-101

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2014.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4291542PMC
January 2015

Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors.

PLoS One 2014 20;9(1):e84713. Epub 2014 Jan 20.

Division of Biology, California Institute of Technology, Pasadena, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0084713PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3896368PMC
December 2014

A comparative encyclopedia of DNA elements in the mouse genome.

Authors:
Feng Yue Yong Cheng Alessandra Breschi Jeff Vierstra Weisheng Wu Tyrone Ryba Richard Sandstrom Zhihai Ma Carrie Davis Benjamin D Pope Yin Shen Dmitri D Pervouchine Sarah Djebali Robert E Thurman Rajinder Kaul Eric Rynes Anthony Kirilusha Georgi K Marinov Brian A Williams Diane Trout Henry Amrhein Katherine Fisher-Aylor Igor Antoshechkin Gilberto DeSalvo Lei-Hoon See Meagan Fastuca Jorg Drenkow Chris Zaleski Alex Dobin Pablo Prieto Julien Lagarde Giovanni Bussotti Andrea Tanzer Olgert Denas Kanwei Li M A Bender Miaohua Zhang Rachel Byron Mark T Groudine David McCleary Long Pham Zhen Ye Samantha Kuan Lee Edsall Yi-Chieh Wu Matthew D Rasmussen Mukul S Bansal Manolis Kellis Cheryl A Keller Christapher S Morrissey Tejaswini Mishra Deepti Jain Nergiz Dogan Robert S Harris Philip Cayting Trupti Kawli Alan P Boyle Ghia Euskirchen Anshul Kundaje Shin Lin Yiing Lin Camden Jansen Venkat S Malladi Melissa S Cline Drew T Erickson Vanessa M Kirkup Katrina Learned Cricket A Sloan Kate R Rosenbloom Beatriz Lacerda de Sousa Kathryn Beal Miguel Pignatelli Paul Flicek Jin Lian Tamer Kahveci Dongwon Lee W James Kent Miguel Ramalho Santos Javier Herrero Cedric Notredame Audra Johnson Shinny Vong Kristen Lee Daniel Bates Fidencio Neri Morgan Diegel Theresa Canfield Peter J Sabo Matthew S Wilken Thomas A Reh Erika Giste Anthony Shafer Tanya Kutyavin Eric Haugen Douglas Dunn Alex P Reynolds Shane Neph Richard Humbert R Scott Hansen Marella De Bruijn Licia Selleri Alexander Rudensky Steven Josefowicz Robert Samstein Evan E Eichler Stuart H Orkin Dana Levasseur Thalia Papayannopoulou Kai-Hsin Chang Arthur Skoultchi Srikanta Gosh Christine Disteche Piper Treuting Yanli Wang Mitchell J Weiss Gerd A Blobel Xiaoyi Cao Sheng Zhong Ting Wang Peter J Good Rebecca F Lowdon Leslie B Adams Xiao-Qiao Zhou Michael J Pazin Elise A Feingold Barbara Wold James Taylor Ali Mortazavi Sherman M Weissman John A Stamatoyannopoulos Michael P Snyder Roderic Guigo Thomas R Gingeras David M Gilbert Ross C Hardison Michael A Beer Bing Ren

Nature 2014 Nov;515(7527):355-64

Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1038/nature13992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266106PMC
November 2014

A ratiometric-based measure of gene co-expression.

BMC Bioinformatics 2014 Nov 20;15:331. Epub 2014 Nov 20.

Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Blvd, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1186/1471-2105-15-331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289233PMC
November 2014

A transgenerational process defines piRNA biogenesis in Drosophila virilis.

Cell Rep 2014 Sep 4;8(6):1617-1623. Epub 2014 Sep 4.

California Institute of Technology, Division of Biology and Biological Engineering, 147-75, 1200 East California Boulevard, Pasadena, CA 91125, USA. Electronic address:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054749PMC
http://dx.doi.org/10.1016/j.celrep.2014.08.013DOI Listing
September 2014

Genome-wide analysis reveals coating of the mitochondrial genome by TFAM.

PLoS One 2013 26;8(8):e74513. Epub 2013 Aug 26.

Division of Biology, California Institute of Technology, Pasadena, California, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074513PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753274PMC
June 2014

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

Genome Res 2014 Mar 3;24(3):496-510. Epub 2013 Dec 3.

Division of Biology, California Institute of Technology, Pasadena, California 91125, USA;

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http://genome.cshlp.org/cgi/doi/10.1101/gr.161034.113
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http://dx.doi.org/10.1101/gr.161034.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3941114PMC
March 2014

Large-scale quality analysis of published ChIP-seq data.

G3 (Bethesda) 2014 Feb 19;4(2):209-23. Epub 2014 Feb 19.

Division of Biology, California Institute of Technology, Pasadena, California 91125.

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http://dx.doi.org/10.1534/g3.113.008680DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3931556PMC
February 2014

Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps.

Genome Res 2013 Dec 29;23(12):2136-48. Epub 2013 Oct 29.

Department of Developmental and Cell Biology, University of California, Irvine, California 92697, USA;

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http://dx.doi.org/10.1101/gr.158261.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847782PMC
December 2013

Antitumor activity of a pyrrole-imidazole polyamide.

Proc Natl Acad Sci U S A 2013 Jan 14;110(5):1863-8. Epub 2013 Jan 14.

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1222035110
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http://dx.doi.org/10.1073/pnas.1222035110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562772PMC
January 2013

Gene expression changes in a tumor xenograft by a pyrrole-imidazole polyamide.

Proc Natl Acad Sci U S A 2012 Oct 17;109(40):16041-5. Epub 2012 Sep 17.

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1073/pnas.1214267109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3479560PMC
October 2012

Landscape of transcription in human cells.

Nature 2012 Sep;489(7414):101-8

Centre for Genomic Regulation and UPF, Doctor Aiguader 88, Barcelona 08003, Catalonia, Spain.

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http://dx.doi.org/10.1038/nature11233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684276PMC
September 2012

An encyclopedia of mouse DNA elements (Mouse ENCODE).

August 2012