Gennady Churakov

Gennady Churakov

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Gennady Churakov

Gennady Churakov

Publications by authors named "Gennady Churakov"

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30Publications

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The Volcano Rabbit in the Phylogenetic Network of Lagomorphs.

Genome Biol Evol 2019 01 1;11(1):11-16. Epub 2019 Jan 1.

Institute of Experimental Pathology (ZMBE), University of Münster, Germany.

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http://dx.doi.org/10.1093/gbe/evy257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6319600PMC
January 2019

Speciation network in Laurasiatheria: retrophylogenomic signals.

Genome Res 2017 Jun 15;27(6):997-1003. Epub 2017 Mar 15.

Institute of Experimental Pathology, ZMBE, University of Münster, 48149 Münster, Germany.

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http://dx.doi.org/10.1101/gr.210948.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453332PMC
June 2017

The Beaver's Phylogenetic Lineage Illuminated by Retroposon Reads.

Sci Rep 2017 03 3;7:43562. Epub 2017 Mar 3.

Institute of Experimental Pathology (ZMBE), University of Münster, Münster, Germany.

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http://dx.doi.org/10.1038/srep43562DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5335264PMC
March 2017

Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates.

Sci Adv 2016 08 10;2(8):e1600633. Epub 2016 Aug 10.

Department of Veterinary Integrative Biosciences, Interdisciplinary Program in Genetics, Texas A&M University, College Station, TX 77843, USA.

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http://dx.doi.org/10.1126/sciadv.1600633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4980104PMC
August 2016

Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data.

PLoS Comput Biol 2016 Mar 11;12(3):e1004812. Epub 2016 Mar 11.

Institute of Experimental Pathology (ZMBE), University of Münster, Münster, Germany.

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http://dx.doi.org/10.1371/journal.pcbi.1004812DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4788455PMC
March 2016

Exploring Massive Incomplete Lineage Sorting in Arctoids (Laurasiatheria, Carnivora).

Mol Biol Evol 2015 Dec 3;32(12):3194-204. Epub 2015 Sep 3.

Institute of Experimental Pathology, ZMBE, University of Münster, Münster, Germany

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http://dx.doi.org/10.1093/molbev/msv188DOI Listing
December 2015

Ancient traces of tailless retropseudogenes in therian genomes.

Genome Biol Evol 2015 Feb 26;7(3):889-900. Epub 2015 Feb 26.

Institute of Experimental Pathology, ZMBE, University of Münster, Germany

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http://dx.doi.org/10.1093/gbe/evv040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322556PMC
February 2015

GPAC-genome presence/absence compiler: a web application to comparatively visualize multiple genome-level changes.

Mol Biol Evol 2015 Jan 25;32(1):275-86. Epub 2014 Sep 25.

Institute of Experimental Pathology, ZMBE, University of Münster, Münster, Germany

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http://dx.doi.org/10.1093/molbev/msu276DOI Listing
January 2015

Retrophylogenomics place tarsiers on the evolutionary branch of anthropoids.

Sci Rep 2013 ;3:1756

Institute of Experimental Pathology, University of Münster, 48149 Münster, Germany.

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http://dx.doi.org/10.1038/srep01756DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3639448PMC
February 2014

Ancestry of the Australian termitivorous numbat.

Mol Biol Evol 2013 May 21;30(5):1041-5. Epub 2013 Feb 21.

Institute of Experimental Pathology (ZMBE), University of Münster, Münster, Germany.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/mst032DOI Listing
May 2013

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds.

Nat Commun 2011 Aug 23;2:443. Epub 2011 Aug 23.

Institute of Experimental Pathology (ZMBE), University of Münster, Von-Esmarch-Strasse 56, D-48149 Münster, Germany.

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http://dx.doi.org/10.1038/ncomms1448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3265382PMC
August 2011

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity.

BMC Evol Biol 2010 Dec 2;10:376. Epub 2010 Dec 2.

Institute of Experimental Pathology, ZMBE, University of Münster, Von-Esmarch-Str, 56, 48149 Münster, Germany.

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http://dx.doi.org/10.1186/1471-2148-10-376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3014933PMC
December 2010

Rodent evolution: back to the root.

Mol Biol Evol 2010 Jun 25;27(6):1315-26. Epub 2010 Jan 25.

Institute of Experimental Pathology (ZMBE), University of Münster, Münster, Germany.

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http://dx.doi.org/10.1093/molbev/msq019DOI Listing
June 2010

Mosaic retroposon insertion patterns in placental mammals.

Genome Res 2009 May 4;19(5):868-75. Epub 2009 Mar 4.

Institute of Experimental Pathology, Center for Molecular Biology of Inflammation, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1101/gr.090647.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675975PMC
May 2009

Retroposed SNOfall--a mammalian-wide comparison of platypus snoRNAs.

Genome Res 2008 Jun 7;18(6):1005-10. Epub 2008 May 7.

Institute of Experimental Pathology (ZMBE), University of Münster, Münster 48149, Germany.

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http://dx.doi.org/10.1101/gr.7177908DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2413151PMC
June 2008

Genome analysis of the platypus reveals unique signatures of evolution.

Authors:
Wesley C Warren LaDeana W Hillier Jennifer A Marshall Graves Ewan Birney Chris P Ponting Frank Grützner Katherine Belov Webb Miller Laura Clarke Asif T Chinwalla Shiaw-Pyng Yang Andreas Heger Devin P Locke Pat Miethke Paul D Waters Frédéric Veyrunes Lucinda Fulton Bob Fulton Tina Graves John Wallis Xose S Puente Carlos López-Otín Gonzalo R Ordóñez Evan E Eichler Lin Chen Ze Cheng Janine E Deakin Amber Alsop Katherine Thompson Patrick Kirby Anthony T Papenfuss Matthew J Wakefield Tsviya Olender Doron Lancet Gavin A Huttley Arian F A Smit Andrew Pask Peter Temple-Smith Mark A Batzer Jerilyn A Walker Miriam K Konkel Robert S Harris Camilla M Whittington Emily S W Wong Neil J Gemmell Emmanuel Buschiazzo Iris M Vargas Jentzsch Angelika Merkel Juergen Schmitz Anja Zemann Gennady Churakov Jan Ole Kriegs Juergen Brosius Elizabeth P Murchison Ravi Sachidanandam Carly Smith Gregory J Hannon Enkhjargal Tsend-Ayush Daniel McMillan Rosalind Attenborough Willem Rens Malcolm Ferguson-Smith Christophe M Lefèvre Julie A Sharp Kevin R Nicholas David A Ray Michael Kube Richard Reinhardt Thomas H Pringle James Taylor Russell C Jones Brett Nixon Jean-Louis Dacheux Hitoshi Niwa Yoko Sekita Xiaoqiu Huang Alexander Stark Pouya Kheradpour Manolis Kellis Paul Flicek Yuan Chen Caleb Webber Ross Hardison Joanne Nelson Kym Hallsworth-Pepin Kim Delehaunty Chris Markovic Pat Minx Yucheng Feng Colin Kremitzki Makedonka Mitreva Jarret Glasscock Todd Wylie Patricia Wohldmann Prathapan Thiru Michael N Nhan Craig S Pohl Scott M Smith Shunfeng Hou Mikhail Nefedov Pieter J de Jong Marilyn B Renfree Elaine R Mardis Richard K Wilson

Nature 2008 May;453(7192):175-83

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature06936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803040PMC
May 2008

Retroposed elements and their flanking regions resolve the evolutionary history of xenarthran mammals (armadillos, anteaters, and sloths).

Mol Biol Evol 2007 Nov 19;24(11):2573-82. Epub 2007 Sep 19.

Institute of Experimental Pathology (ZMBE), University of Münster, Münster, Germany.

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http://dx.doi.org/10.1093/molbev/msm201DOI Listing
November 2007

Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes).

BMC Evol Biol 2007 Oct 9;7:190. Epub 2007 Oct 9.

Institute of Experimental Pathology (ZMBE) University of Münster, Von-Esmarch-Str, 56, D-48149 Münster, Germany.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-7-190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2169234PMC
October 2007

Evolutionary history of 7SL RNA-derived SINEs in Supraprimates.

Trends Genet 2007 Apr 20;23(4):158-61. Epub 2007 Feb 20.

Institute of Experimental Pathology, ZMBE, University of Münster, Von-Esmarch-Str. 56, D-48149 Münster, Germany.

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http://dx.doi.org/10.1016/j.tig.2007.02.002DOI Listing
April 2007

Retroposed elements as archives for the evolutionary history of placental mammals.

PLoS Biol 2006 Apr 14;4(4):e91. Epub 2006 Mar 14.

Institute of Experimental Pathology, Center for Molecular Biology of Inflammation, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1371/journal.pbio.0040091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1395351PMC
April 2006

A novel abundant family of retroposed elements (DAS-SINEs) in the nine-banded armadillo (Dasypus novemcinctus).

Mol Biol Evol 2005 Apr 22;22(4):886-93. Epub 2004 Dec 22.

Institute of Experimental Pathology (ZMBE), University of Münster, Münster, Germany.

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http://dx.doi.org/10.1093/molbev/msi071DOI Listing
April 2005

A novel class of mammalian-specific tailless retropseudogenes.

Genome Res 2004 Oct 13;14(10A):1911-5. Epub 2004 Sep 13.

Institute of Experimental Pathology (ZMBE), University of Muenster, D-48149 Muenster, Germany.

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http://dx.doi.org/10.1101/gr.2720104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524414PMC
October 2004

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria.

Nucleic Acids Res 2003 Nov;31(22):6435-43

Institute of Cell and Molecular Biology, Biomedical Center, Uppsala University, Box 596, 75124 Uppsala, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC275561PMC
http://dx.doi.org/10.1093/nar/gkg867DOI Listing
November 2003