Gaurav Chopra

Gaurav Chopra

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Gaurav Chopra

Gaurav Chopra

Publications by authors named "Gaurav Chopra"

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25Publications

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Lemon: a framework for rapidly mining structural information from the Protein Data Bank.

Bioinformatics 2019 Oct;35(20):4165-4167

Department of Chemistry, Purdue University, West Lafayette, IN, USA.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/btz178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6792122PMC
October 2019

Computational chemoproteomics to understand the role of selected psychoactives in treating mental health indications.

Sci Rep 2019 Sep 11;9(1):13155. Epub 2019 Sep 11.

Department of Chemistry, Purdue University, West Lafayette, IN, USA.

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http://dx.doi.org/10.1038/s41598-019-49515-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6739337PMC
September 2019

Rapid, Refined, and Robust Method for Expression, Purification, and Characterization of Recombinant Human Amyloid beta 1-42.

Methods Protoc 2019 Jun 7;2(2). Epub 2019 Jun 7.

Department of Chemistry, Purdue University, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.3390/mps2020048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6632169PMC
June 2019

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.

Sci Rep 2018 07 2;8(1):9939. Epub 2018 Jul 2.

Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

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http://dx.doi.org/10.1038/s41598-018-26812-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028396PMC
July 2018

Exploring Polypharmacology in Drug Discovery and Repurposing Using the CANDO Platform.

Curr Pharm Des 2016 ;22(21):3109-23

Department of Biomedical Informatics, SUNY, Buffalo, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6376875PMC
http://dx.doi.org/10.2174/1381612822666160325121943DOI Listing
November 2017

Identification of New FLT3 Inhibitors That Potently Inhibit AML Cell Lines via an Azo Click-It/Staple-It Approach.

ACS Med Chem Lett 2017 May 14;8(5):492-497. Epub 2017 Apr 14.

Institute for Drug Discovery, Department of Chemistry, Purdue University Center for Cancer Research, Purdue University, West Lafayette, Indiana 47907, United States.

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http://dx.doi.org/10.1021/acsmedchemlett.6b00468DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430396PMC
May 2017

Analgesic Effect of Intra-articular Morphine or Dexmedetomidine Added with Levobupivacaine in Arthroscopic Knee Surgeries - A Comparative Evaluation.

J Clin Diagn Res 2017 Apr 1;11(4):UC13-UC15. Epub 2017 Apr 1.

Associate Professor, Department of Orthopaedics, Himalayan Institute of Medical Sciences, SRHU, Dehradun, Uttarakhand, India.

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http://dx.doi.org/10.7860/JCDR/2017/25075.9669DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449884PMC
April 2017

Combating Ebola with Repurposed Therapeutics Using the CANDO Platform.

Molecules 2016 Nov 25;21(12). Epub 2016 Nov 25.

Department of Biomedical Informatics, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY 14203, USA.

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http://dx.doi.org/10.3390/molecules21121537DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5958544PMC
November 2016

Efficacy of Platelet Rich Plasma via Lumbar Epidural Route in Chronic Prolapsed Intervertebral Disc Patients-A Pilot Study.

J Clin Diagn Res 2016 Sep 1;10(9):UC05-UC07. Epub 2016 Sep 1.

Professor, Department of Anaesthesia, Himalayan Institute Hospital Trust , Dehradun, Uttarakhand, India .

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http://dx.doi.org/10.7860/JCDR/2016/21863.8482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5072053PMC
September 2016

CD28 Costimulation: From Mechanism to Therapy.

Immunity 2016 05;44(5):973-88

Diabetes Center and Department of Medicine, University of California, San Francisco, CA 94143, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2016.04.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932896PMC
May 2016

Multiscale modelling of relationships between protein classes and drug behavior across all diseases using the CANDO platform.

Mini Rev Med Chem 2015 ;15(8):705-17

Department of Biomedical Informatics, School of Medicine and Biomedical Sciences, State University of New York (SUNY), 923 Main Street, Buffalo, NY 14203, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5903852PMC
http://dx.doi.org/10.2174/1389557515666150219145148DOI Listing
January 2016

CANDO and the infinite drug discovery frontier.

Drug Discov Today 2014 Sep 26;19(9):1353-63. Epub 2014 Jun 26.

University of Washington, Department of Microbiology, Seattle, WA 98109, United States. Electronic address:

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http://dx.doi.org/10.1016/j.drudis.2014.06.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4167471PMC
September 2014

Distal effect of amino acid substitutions in CYP2C9 polymorphic variants causes differences in interatomic interactions against (S)-warfarin.

PLoS One 2013 2;8(9):e74053. Epub 2013 Sep 2.

Department of Biochemistry, Faculty of Science, Mahidol University, Bangkok, Thailand ; Genomics Institute, National Center for Genetic Engineering and Biotechnology, Pathumtani, Thailand ; Department of Microbiology, University of Washington, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074053PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3759441PMC
April 2014

KoBaMIN: a knowledge-based minimization web server for protein structure refinement.

Nucleic Acids Res 2012 Jul 7;40(Web Server issue):W323-8. Epub 2012 May 7.

Department of Structural Biology, 299 Campus Dr W, Fairchild Bldg, Room D100, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1093/nar/gks376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394243PMC
July 2012

Remarkable patterns of surface water ordering around polarized buckminsterfullerene.

Proc Natl Acad Sci U S A 2011 Aug 15;108(35):14455-60. Epub 2011 Aug 15.

Department of Structural Biology, Stanford University School of Medicine, D100 Fairchild Building, Stanford, CA 94305, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1110626108
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http://dx.doi.org/10.1073/pnas.1110626108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3167499PMC
August 2011

Consistent refinement of submitted models at CASP using a knowledge-based potential.

Proteins 2010 Sep;78(12):2668-78

Department of Structural Biology, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1002/prot.22781DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2911515PMC
September 2010

Taylor's approach in an ankylosing spondylitis patient posted for percutaneous nephrolithotomy: A challenge for anesthesiologists.

Saudi J Anaesth 2009 Jul;3(2):87-90

Department of Anesthesiology, Intensive Care and Pain Management, Himalayan Institute of Medical Sciences, Dehradun, Uttaranchal, India.

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http://dx.doi.org/10.4103/1658-354X.57879DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2876933PMC
July 2009

Solvent dramatically affects protein structure refinement.

Proc Natl Acad Sci U S A 2008 Dec 10;105(51):20239-44. Epub 2008 Dec 10.

Department of Structural Biology, Stanford University, Stanford, CA 94305-5126, USA.

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http://dx.doi.org/10.1073/pnas.0810818105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2600579PMC
December 2008