Garry P Nolan

Garry P Nolan

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Garry P Nolan

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Cellular Signaling Analysis shows antiviral, ribavirin-mediated ribosomal signaling modulation.

Antiviral Res 2019 Nov 9;171:104598. Epub 2019 Sep 9.

Pharmaceutical Sciences Department, Western University of Health Sciences, Pomona, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.antiviral.2019.104598DOI Listing
November 2019

Role for polo-like kinase 4 in mediation of cytokinesis.

Proc Natl Acad Sci U S A 2019 Jun 16;116(23):11309-11318. Epub 2019 May 16.

Department of Medicine, Geffen School of Medicine at UCLA, Los Angeles, CA 90095.

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http://dx.doi.org/10.1073/pnas.1818820116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561306PMC
June 2019

Multiplexed profiling of RNA and protein expression signatures in individual cells using flow or mass cytometry.

Nat Protoc 2019 03 6;14(3):901-920. Epub 2019 Feb 6.

Department of Molecular and Clinical Cancer Medicine, Institute of Translational Medicine, University of Liverpool, Liverpool, UK.

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http://dx.doi.org/10.1038/s41596-018-0120-8DOI Listing
March 2019

Metal-isotope-tagged monoclonal antibodies for high-dimensional mass cytometry.

Nat Protoc 2018 10;13(10):2121-2148

Baxter Laboratory for Stem Cell Biology, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.

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http://www.nature.com/articles/s41596-018-0016-7
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http://dx.doi.org/10.1038/s41596-018-0016-7DOI Listing
October 2018

Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging.

Cell 2018 08 2;174(4):968-981.e15. Epub 2018 Aug 2.

Department of Microbiology and Immunology, Baxter Laboratory in Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2018.07.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6086938PMC
August 2018

DRUG-NEM: Optimizing drug combinations using single-cell perturbation response to account for intratumoral heterogeneity.

Proc Natl Acad Sci U S A 2018 05 13;115(18):E4294-E4303. Epub 2018 Apr 13.

Department of Radiology, Center for Cancer Systems Biology, Stanford University, Stanford, CA 94305;

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http://dx.doi.org/10.1073/pnas.1711365115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5939057PMC
May 2018

Single-cell mass cytometry reveals distinct populations of brain myeloid cells in mouse neuroinflammation and neurodegeneration models.

Nat Neurosci 2018 04 5;21(4):541-551. Epub 2018 Mar 5.

Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1038/s41593-018-0100-xDOI Listing
April 2018

Whole-genome sequencing of Atacama skeleton shows novel mutations linked with dysplasia.

Genome Res 2018 04 22;28(4):423-431. Epub 2018 Mar 22.

Baxter Laboratory for Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1101/gr.223693.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5880234PMC
April 2018

Commonly Occurring Cell Subsets in High-Grade Serous Ovarian Tumors Identified by Single-Cell Mass Cytometry.

Cell Rep 2018 02;22(7):1875-1888

Stanford Comprehensive Cancer Institute and Department of Obstetrics and Gynecology, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.01.053DOI Listing
February 2018

Atomic mass tag of bismuth-209 for increasing the immunoassay multiplexing capacity of mass cytometry.

Cytometry A 2017 12 4;91(12):1150-1163. Epub 2017 Dec 4.

Baxter Laboratory for Stem Cell Biology Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford California.

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http://dx.doi.org/10.1002/cyto.a.23283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802970PMC
December 2017

High-Dimensional Phenotypic Mapping of Human Dendritic Cells Reveals Interindividual Variation and Tissue Specialization.

Immunity 2017 12 5;47(6):1037-1050.e6. Epub 2017 Dec 5.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA; Program in Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2017.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738280PMC
December 2017

Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks.

PLoS Comput Biol 2017 12 27;13(12):e1005875. Epub 2017 Dec 27.

Statistics Department, Stanford University, Stanford, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1005875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5760091PMC
December 2017

A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites.

Nature 2017 11 22;551(7682):648-652. Epub 2017 Nov 22.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/nature24661DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850949PMC
November 2017

Jak1 Integrates Cytokine Sensing to Regulate Hematopoietic Stem Cell Function and Stress Hematopoiesis.

Cell Stem Cell 2017 10 28;21(4):489-501.e7. Epub 2017 Sep 28.

Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Center for Hematologic Malignancies, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Leukemia Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2017.08.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5847260PMC
October 2017

NKG2D ligand expression in Crohn's disease and NKG2D-dependent stimulation of CD8 T cell migration.

Exp Mol Pathol 2017 08 3;103(1):56-70. Epub 2017 Jul 3.

Gastrounit, Medical Division, Hvidovre University Hospital, DK-2650 Hvidovre, Denmark; Faculty of Health Sciences, The Panum Institute, University of Copenhagen, DK-2200 Copenhagen N, Denmark.

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http://dx.doi.org/10.1016/j.yexmp.2017.06.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5560431PMC
August 2017

In silico modeling identifies CD45 as a regulator of IL-2 synergy in the NKG2D-mediated activation of immature human NK cells.

Sci Signal 2017 Jun 27;10(485). Epub 2017 Jun 27.

Battelle Center for Mathematical Medicine, Research Institute at the Nationwide Children's Hospital, 700 Children's Drive, Columbus, OH 43205, USA.

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http://dx.doi.org/10.1126/scisignal.aai9062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5556952PMC
June 2017

High-resolution myogenic lineage mapping by single-cell mass cytometry.

Nat Cell Biol 2017 05 17;19(5):558-567. Epub 2017 Apr 17.

Blau Laboratory, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/ncb3507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5728993PMC
May 2017

AN UPDATED DEBARCODING TOOL FOR MASS CYTOMETRY WITH CELL TYPE-SPECIFIC AND CELL SAMPLE-SPECIFIC STRINGENCY ADJUSTMENT.

Pac Symp Biocomput 2017 ;22:588-598

Department of Biomedical Engineering, University of Virginia, Charlottesville, VA 22903, USA,

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http://www.worldscientific.com/doi/abs/10.1142/9789813207813
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http://dx.doi.org/10.1142/9789813207813_0054DOI Listing
March 2017

High-throughput precision measurement of subcellular localization in single cells.

Cytometry A 2017 02 17;91(2):180-189. Epub 2017 Jan 17.

Department of Microbiology and Immunology, Stanford University, Stanford, California.

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http://dx.doi.org/10.1002/cyto.a.23054DOI Listing
February 2017

Microsphere cytometry to interrogate microenvironment-dependent cell signaling.

Integr Biol (Camb) 2017 02;9(2):123-134

Department of Biomedicine, Center for Cancer Biomarkers, University of Bergen, Bergen, Norway.

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http://dx.doi.org/10.1039/c6ib00207bDOI Listing
February 2017

EBI3 regulates the NK cell response to mouse cytomegalovirus infection.

Proc Natl Acad Sci U S A 2017 02 31;114(7):1625-1630. Epub 2017 Jan 31.

Department of Microbiology and Immunology, University of California, San Francisco, CA 94143;

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http://dx.doi.org/10.1073/pnas.1700231114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321027PMC
February 2017

Systemic Immunity Is Required for Effective Cancer Immunotherapy.

Cell 2017 01 19;168(3):487-502.e15. Epub 2017 Jan 19.

Department of Pathology, Stanford University, Stanford, CA 94305, USA; Program in Immunology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.12.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5312823PMC
January 2017

Mutant IDH1 Downregulates ATM and Alters DNA Repair and Sensitivity to DNA Damage Independent of TET2.

Cancer Cell 2016 08 14;30(2):337-348. Epub 2016 Jul 14.

The Campbell Family Institute for Breast Cancer Research, University Health Network, Toronto, ON M5G 2C1, Canada; The Princess Margaret Cancer Centre and Ontario Cancer Institute, University Health Network, Toronto, ON M5G 1L7, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2016.05.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5022794PMC
August 2016

Visualization and cellular hierarchy inference of single-cell data using SPADE.

Nat Protoc 2016 07 16;11(7):1264-79. Epub 2016 Jun 16.

Department of Radiology, Center for Cancer Systems Biology, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1038/nprot.2016.066DOI Listing
July 2016

Automated mapping of phenotype space with single-cell data.

Nat Methods 2016 06 16;13(6):493-6. Epub 2016 May 16.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1038/nmeth.3863DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4896314PMC
June 2016

In Reply.

Anesthesiology 2016 06;124(6):1414-5

Stanford University School of Medicine, Stanford, California (M.S.A.).

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http://dx.doi.org/10.1097/ALN.0000000000001091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4914362PMC
June 2016

Mass Cytometry: Single Cells, Many Features.

Cell 2016 May;165(4):780-91

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA; Program in Immunology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674163041
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http://dx.doi.org/10.1016/j.cell.2016.04.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860251PMC
May 2016

Highly multiplexed simultaneous detection of RNAs and proteins in single cells.

Nat Methods 2016 Mar 25;13(3):269-75. Epub 2016 Jan 25.

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1038/nmeth.3742DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4767631PMC
March 2016

Coordinate actions of innate immune responses oppose those of the adaptive immune system during Salmonella infection of mice.

Sci Signal 2016 Jan 12;9(410):ra4. Epub 2016 Jan 12.

The Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA 94305, USA. Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1126/scisignal.aaa9303DOI Listing
January 2016

Patient-specific Immune States before Surgery Are Strong Correlates of Surgical Recovery.

Anesthesiology 2015 Dec;123(6):1241-55

From the Baxter Laboratory in Stem Cell Biology, Stanford University, Stanford, California (G.K.F., B.G., N.A., G.P.N.); Department of Microbiology and Immunology, Stanford University, Stanford, California (G.K.F., G.P.N.); and Department of Anesthesiology, Perioperative, and Pain Medicine, Stanford University School of Medicine, Stanford, California (B.G., E.A.G., M.T., M.S.A.).

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http://dx.doi.org/10.1097/ALN.0000000000000887DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681408PMC
December 2015

Single-cell systems-level analysis of human Toll-like receptor activation defines a chemokine signature in patients with systemic lupus erythematosus.

J Allergy Clin Immunol 2015 Nov 30;136(5):1326-36. Epub 2015 May 30.

Department of Microbiology and Immunology, Stanford University, Stanford, Calif; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, Calif; Howard Hughes Medical Institute, Stanford University, Stanford, Calif. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2015.04.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4640970PMC
November 2015

Deletions in the cytoplasmic domain of iRhom1 and iRhom2 promote shedding of the TNF receptor by the protease ADAM17.

Sci Signal 2015 Nov 3;8(401):ra109. Epub 2015 Nov 3.

Department of Gastroenterology, Hepatology and Infectious Diseases, Medical Faculty, University Hospital, Heinrich Heine University Düsseldorf, Moorenstrasse 5, 40225 Düsseldorf, Germany. Department of Molecular Medicine II, Medical Faculty, Heinrich Heine University Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany.

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http://dx.doi.org/10.1126/scisignal.aac5356DOI Listing
November 2015

Mass Cytometric Functional Profiling of Acute Myeloid Leukemia Defines Cell-Cycle and Immunophenotypic Properties That Correlate with Known Responses to Therapy.

Cancer Discov 2015 Sep 19;5(9):988-1003. Epub 2015 Jun 19.

Baxter Laboratory for Stem Cell Biology, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California.

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http://dx.doi.org/10.1158/2159-8290.CD-15-0298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4652947PMC
September 2015

Synthetically Modified Viral Capsids as Versatile Carriers for Use in Antibody-Based Cell Targeting.

Bioconjug Chem 2015 Aug 6;26(8):1590-6. Epub 2015 Jul 6.

†Department of Chemistry, University of California, Berkeley, California 94720-1460, United States.

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http://dx.doi.org/10.1021/acs.bioconjchem.5b00226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4758138PMC
August 2015

Unipotent Megakaryopoietic Pathway Bridging Hematopoietic Stem Cells and Mature Megakaryocytes.

Stem Cells 2015 Jul 27;33(7):2196-207. Epub 2015 Apr 27.

Department of Hematology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.

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http://dx.doi.org/10.1002/stem.1985DOI Listing
July 2015

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis.

Cell 2015 Jul 18;162(1):184-97. Epub 2015 Jun 18.

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.05.047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4508757PMC
July 2015

IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system.

Science 2015 Jul;349(6244):1259425

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA. Program in Immunology, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1126/science.1259425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4537647PMC
July 2015

Early reprogramming regulators identified by prospective isolation and mass cytometry.

Nature 2015 May 1;521(7552):352-6. Epub 2015 Apr 1.

1] Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, California 94305, USA [2] Department of Pathology, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/nature14274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441548PMC
May 2015

Nomenclature of Toso, Fas apoptosis inhibitory molecule 3, and IgM FcR.

J Immunol 2015 May;194(9):4055-7

Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD 20852;

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http://dx.doi.org/10.4049/jimmunol.1500222DOI Listing
May 2015

Mass cytometry as a platform for the discovery of cellular biomarkers to guide effective rheumatic disease therapy.

Arthritis Res Ther 2015 May 18;17:127. Epub 2015 May 18.

Division of Immune Monitoring and Biomarker Development, Aduro BioTech, Inc., Berkeley, CA, 94710, USA.

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http://dx.doi.org/10.1186/s13075-015-0644-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436107PMC
May 2015

A continuous molecular roadmap to iPSC reprogramming through progression analysis of single-cell mass cytometry.

Cell Stem Cell 2015 Mar;16(3):323-37

Department of Microbiology and Immunology, Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2015.01.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4401090PMC
March 2015

T-cell STAT3 is required for the maintenance of humoral immunity to LCMV.

Eur J Immunol 2015 Feb 15;45(2):418-27. Epub 2014 Dec 15.

Department of Gastroenterology, Hepatology, and Infectious Diseases, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany; Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1002/eji.201445060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383653PMC
February 2015

Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm.

Nat Protoc 2015 Feb 22;10(2):316-33. Epub 2015 Jan 22.

Baxter Laboratory for Stem Cell Biology, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1038/nprot.2015.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4347881PMC
February 2015

Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining.

Cytometry A 2014 Dec 1;85(12):1011-9. Epub 2014 Oct 1.

Baxter Laboratory for Stem Cell Biology, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California; Divisions of Hematology and Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, California.

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http://dx.doi.org/10.1002/cyto.a.22573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4361015PMC
December 2014

NRASG12V oncogene facilitates self-renewal in a murine model of acute myelogenous leukemia.

Blood 2014 Nov 14;124(22):3274-83. Epub 2014 Oct 14.

Department of Genetics, Cell Biology and Development, and Masonic Cancer Center, University of Minnesota, Minneapolis, MN; Center for Genome Engineering and Department of Pediatrics, University of Minnesota, Minneapolis, MN.

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http://dx.doi.org/10.1182/blood-2013-08-521708DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4239336PMC
November 2014

Systems biology. Conditional density-based analysis of T cell signaling in single-cell data.

Science 2014 Nov 23;346(6213):1250689. Epub 2014 Oct 23.

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1126/science.1250689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334155PMC
November 2014

Single-cell mass cytometry of TCR signaling: amplification of small initial differences results in low ERK activation in NOD mice.

Proc Natl Acad Sci U S A 2014 Nov 31;111(46):16466-71. Epub 2014 Oct 31.

Division of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115;

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http://dx.doi.org/10.1073/pnas.1419337111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4246343PMC
November 2014

Mass cytometry to decipher the mechanism of nongenetic drug resistance in cancer.

Curr Top Microbiol Immunol 2014 ;377:85-94

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA, 94305, USA.

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http://link.springer.com/10.1007/82_2014_365
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http://dx.doi.org/10.1007/82_2014_365DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6676908PMC
September 2014

High-dimensional cytometry. Preface.

Curr Top Microbiol Immunol 2014 ;377:vii-viii

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September 2014

Clinical recovery from surgery correlates with single-cell immune signatures.

Sci Transl Med 2014 Sep;6(255):255ra131

Baxter Laboratory in Stem Cell Biology, Stanford University, Stanford, CA 94305, USA. Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1126/scitranslmed.3009701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334126PMC
September 2014

Automated identification of stratifying signatures in cellular subpopulations.

Proc Natl Acad Sci U S A 2014 Jul 16;111(26):E2770-7. Epub 2014 Jun 16.

Baxter Laboratory for Stem Cell Biology, Department of Microbiology and Immunology, and

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http://dx.doi.org/10.1073/pnas.1408792111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4084463PMC
July 2014

Single-cell mass cytometry analysis of human tonsil T cell remodeling by varicella zoster virus.

Cell Rep 2014 Jul 17;8(2):633-45. Epub 2014 Jul 17.

Department of Pediatrics, Stanford University, Stanford, CA 94025, USA; Department of Microbiology and Immunology, Stanford University, Stanford, CA 94025, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.06.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4127309PMC
July 2014

Snapin, positive regulator of stimulation- induced Ca²⁺ release through RyR, is necessary for HIV-1 replication in T cells.

PLoS One 2013 10;8(10):e75297. Epub 2013 Oct 10.

Department of Pathology, Anatomy and Cell Biology, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America ; Laboratory of Immune Regulation, Osaka University Graduate School of Frontier Biosciences, Suita, Osaka, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075297PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3794929PMC
June 2014

Multiplexed ion beam imaging of human breast tumors.

Nat Med 2014 Apr 2;20(4):436-42. Epub 2014 Mar 2.

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1038/nm.3488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110905PMC
April 2014

Antigen-dependent integration of opposing proximal TCR-signaling cascades determines the functional fate of T lymphocytes.

J Immunol 2014 Mar 31;192(5):2109-19. Epub 2014 Jan 31.

Faculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel;

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http://dx.doi.org/10.4049/jimmunol.1301142DOI Listing
March 2014

Single-cell mass cytometry for analysis of immune system functional states.

Curr Opin Immunol 2013 Aug 31;25(4):484-94. Epub 2013 Aug 31.

Stanford University School of Medicine, Department of Microbiology & Immunology, Baxter Laboratory for Stem Cell Biology, 269 Campus Drive, Stanford, CA 94305-5175, USA.

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http://dx.doi.org/10.1016/j.coi.2013.07.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3835664PMC
August 2013

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.

Nat Biotechnol 2013 Jun 19;31(6):545-52. Epub 2013 May 19.

Department of Biological Sciences, Columbia Initiative for Systems Biology, Columbia University, New York, New York, USA.

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http://dx.doi.org/10.1038/nbt.2594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076922PMC
June 2013

Normalization of mass cytometry data with bead standards.

Cytometry A 2013 May 19;83(5):483-94. Epub 2013 Mar 19.

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1002/cyto.a.22271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3688049PMC
May 2013

COP9 signalosome component JAB1/CSN5 is necessary for T cell signaling through LFA-1 and HIV-1 replication.

PLoS One 2012 24;7(7):e41725. Epub 2012 Jul 24.

Laboratory of Immune Regulation, Osaka University Graduate School of Frontier Biosciences, Suita, Osaka, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0041725PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3404009PMC
February 2013

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators.

Nat Biotechnol 2012 Sep;30(9):858-67

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1038/nbt.2317DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3627543PMC
September 2012

A deep profiler's guide to cytometry.

Trends Immunol 2012 Jul 2;33(7):323-32. Epub 2012 Apr 2.

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.it.2012.02.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3383392PMC
July 2012

Single-cell mass cytometry adapted to measurements of the cell cycle.

Cytometry A 2012 Jul 12;81(7):552-66. Epub 2012 Jun 12.

Baxter Laboratory for Stem Cell Biology, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1002/cyto.a.22075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3667754PMC
July 2012

From single cells to deep phenotypes in cancer.

Nat Biotechnol 2012 Jul 10;30(7):639-47. Epub 2012 Jul 10.

Baxter Laboratory for Stem Cell Biology, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1038/nbt.2283DOI Listing
July 2012

A platinum-based covalent viability reagent for single-cell mass cytometry.

Cytometry A 2012 Jun 10;81(6):467-75. Epub 2012 May 10.

Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1002/cyto.a.22067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3808967PMC
June 2012

Decoupling of tumor-initiating activity from stable immunophenotype in HoxA9-Meis1-driven AML.

Cell Stem Cell 2012 Feb;10(2):210-7

Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.stem.2012.01.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3273989PMC
February 2012

Single-cell phospho-protein analysis by flow cytometry.

Curr Protoc Immunol 2012 Feb;Chapter 8:Unit 8.17.1-20

Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1002/0471142735.im0817s96DOI Listing
February 2012

Flow cytometry in the post fluorescence era.

Authors:
Garry P Nolan

Best Pract Res Clin Haematol 2011 Dec;24(4):505-8

Stanford University School of Medicine, CA 94305, USA.

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http://dx.doi.org/10.1016/j.beha.2011.09.005DOI Listing
December 2011