Gane Ka-Shu Wong

Gane Ka-Shu Wong

UNVERIFIED PROFILE

Are you Gane Ka-Shu Wong?   Register this Author

Register author
Gane Ka-Shu Wong

Gane Ka-Shu Wong

Publications by authors named "Gane Ka-Shu Wong"

Are you Gane Ka-Shu Wong?   Register this Author

100Publications

4509Reads

19Profile Views

Skin colonization by circulating neoplastic clones in cutaneous T-cell lymphoma.

Blood 2019 Oct;134(18):1517-1527

Division of Dermatology, Department of Medicine, University of Alberta, Edmonton, AB, Canada.

View Article

Download full-text PDF

Source
https://ashpublications.org/blood/article/doi/10.1182/blood.
Publisher Site
http://dx.doi.org/10.1182/blood.2019002516DOI Listing
October 2019

Impact of sequencing depth and technology on de novo RNA-Seq assembly.

BMC Genomics 2019 Jul 23;20(1):604. Epub 2019 Jul 23.

Department of Medicine, University of Alberta, Edmonton, AB, T6G 2E1, Canada.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-019-5965-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6651908PMC
July 2019

Origin and evolution of the nuclear auxin response system.

Elife 2018 03 27;7. Epub 2018 Mar 27.

Laboratory of Biochemistry, Wageningen University, Wageningen, Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7554/eLife.33399DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5873896PMC
March 2018

Cerebrospinal Fluid in a Small Cohort of Patients with Multiple Sclerosis Was Generally Free of Microbial DNA.

Front Cell Infect Microbiol 2016 6;6:198. Epub 2017 Jan 6.

Department of Medicine, University of AlbertaEdmonton, AB, Canada; Department of Biological Sciences, University of AlbertaEdmonton, AB, Canada; Beijing Genomics Institute-Shenzhen, Beishan Industrial ZoneShenzhen, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fcimb.2016.00198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5216046PMC
September 2017

Novel mutations involving βI-, βIIA-, or βIVB-tubulin isotypes with functional resemblance to βIII-tubulin in breast cancer.

Protoplasma 2017 May 9;254(3):1163-1173. Epub 2016 Dec 9.

Department of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00709-016-1060-1DOI Listing
May 2017

Enhanced Detection of Cancer Biomarkers in Blood-Borne Extracellular Vesicles Using Nanodroplets and Focused Ultrasound.

Cancer Res 2017 01 28;77(1):3-13. Epub 2016 Oct 28.

Department of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta, Canada.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1158/0008-5472.CAN-15-3231DOI Listing
January 2017

Challenging the paradigms of leaf evolution: Class III HD-Zips in ferns and lycophytes.

New Phytol 2016 Nov 7;212(3):745-758. Epub 2016 Jul 7.

The New York Botanical Garden, 2900 Southern Blvd, Bronx, NY, 10458-5126, USA.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1111/nph.14075
Publisher Site
http://dx.doi.org/10.1111/nph.14075DOI Listing
November 2016

Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants.

Proc Natl Acad Sci U S A 2016 10 10;113(43):12328-12333. Epub 2016 Oct 10.

Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN 37996; Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1607973113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5087002PMC
October 2016

Apparition of the NAC Transcription Factors Predates the Emergence of Land Plants.

Mol Plant 2016 09 11;9(9):1345-1348. Epub 2016 Jun 11.

Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, RD10, 78026 Versailles Cedex, France. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.molp.2016.05.016DOI Listing
September 2016

Mesophyll Chloroplast Investment in C3, C4 and C2 Species of the Genus Flaveria.

Plant Cell Physiol 2016 May 16;57(5):904-18. Epub 2016 Mar 16.

Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks Street, Toronto, ON M5S3B2 Canada

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/pcp/pcw015DOI Listing
May 2016

Mucosal Barrier Depletion and Loss of Bacterial Diversity are Primary Abnormalities in Paediatric Ulcerative Colitis.

J Crohns Colitis 2016 Apr 9;10(4):462-71. Epub 2015 Dec 9.

Centre of Excellence for Gastrointestinal Inflammation and Immunity Research, University of Alberta, Edmonton, Canada Department of Pediatrics, University of Alberta, Edmonton, AB, Canada

View Article

Download full-text PDF

Source
https://academic.oup.com/ecco-jcc/article-lookup/doi/10.1093
Publisher Site
http://dx.doi.org/10.1093/ecco-jcc/jjv223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4946763PMC
April 2016

Functional and topological diversity of LOV domain photoreceptors.

Proc Natl Acad Sci U S A 2016 Mar 29;113(11):E1442-51. Epub 2016 Feb 29.

Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1509428113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801262PMC
March 2016

Occurrence, structure, and evolution of nitric oxide synthase-like proteins in the plant kingdom.

Sci Signal 2016 Mar 1;9(417):re2. Epub 2016 Mar 1.

Equipe de Recherche Labellisée CNRS 6300, BP 86510, 21000 Dijon, France. Université Bourgogne Franche-Comté, UMR 1347 Agroécologie, BP 86510, 21000 Dijon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/scisignal.aad4403DOI Listing
March 2016

Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress.

Funct Integr Genomics 2015 Nov 15;15(6):651-60. Epub 2015 Apr 15.

Key Laboratory of Agricultural Biological Functional Genes, Northeast Agricultural University, Harbin, 150030, China.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s10142-015-0439-y
Publisher Site
http://dx.doi.org/10.1007/s10142-015-0439-yDOI Listing
November 2015

Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining.

J Proteome Res 2015 Nov 8;14(11):4851-62. Epub 2015 Oct 8.

Center for Physiology and Pharmacology, Medical University of Vienna , Schwarzspanierstrasse 17, 1090 Vienna, Austria.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jproteome.5b00681DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642221PMC
November 2015

De novo assembly of a haplotype-resolved human genome.

Nat Biotechnol 2015 Jun 25;33(6):617-22. Epub 2015 May 25.

1] BGI-Shenzhen, Shenzhen, China. [2] Department of Biology, University of Copenhagen, Copenhagen, Denmark. [3] Princess Al Jawhara Albrahim Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, Saudi Arabia. [4] Macau University of Science and Technology, Taipa, Macau, China. [5] Department of Medicine and State Key Laboratory of Pharmaceutical Biotechnology, University of Hong Kong, Hong Kong, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt.3200DOI Listing
June 2015

RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications.

BMC Evol Biol 2015 Jun 18;15:116. Epub 2015 Jun 18.

CAS-MPG Partner Institute and Key Laboratory for Computational Biology, Shanghai Institutes for Biological Sciences, Shanghai, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12862-015-0399-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4472175PMC
June 2015

Recurrent loss of sex is associated with accumulation of deleterious mutations in Oenothera.

Mol Biol Evol 2015 Apr 21;32(4):896-905. Epub 2014 Dec 21.

Department of Biology, University of Toronto at Mississauga, Mississauga, ON, Canada.

View Article

Download full-text PDF

Source
https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
Publisher Site
http://dx.doi.org/10.1093/molbev/msu345DOI Listing
April 2015

Evolution. Response to Comment on "A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity".

Science 2015 Feb;347(6222):621

CNRS, Laboratoire de Physiologie Cellulaire et Végétale (LPCV), UMR 5168, 38054 Grenoble, France. UGA, LPCV, F-38054 Grenoble, France. Commissariat à l'énergie atomique et aux énergies alternatives, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant, LPCV, F-38054 Grenoble, France. Institut National de la Recherche Agronomique, LPCV, F-38054 Grenoble, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1256011DOI Listing
February 2015

Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor.

Mol Phylogenet Evol 2014 Dec 27;81:159-73. Epub 2014 Sep 27.

School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia; University of California, Davis, Section of Plant Biology, One Shields Ave., Davis, CA 95616, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ympev.2014.06.017DOI Listing
December 2014

Transcriptome-mining for single-copy nuclear markers in ferns.

PLoS One 2013 8;8(10):e76957. Epub 2013 Oct 8.

Department of Biology, Duke University, Durham, North Carolina, United States of America ; Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0076957PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3792871PMC
August 2014

All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins.

Nat Methods 2014 Aug 22;11(8):825-33. Epub 2014 Jun 22.

1] Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts, USA. [2] Department of Physics, Harvard University, Cambridge, Massachusetts, USA. [3] Howard Hughes Medical Institute, Harvard University, Cambridge, Massachusetts, USA.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/nmeth.3000
Publisher Site
http://dx.doi.org/10.1038/nmeth.3000DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117813PMC
August 2014

Shared origins of a key enzyme during the evolution of C4 and CAM metabolism.

J Exp Bot 2014 Jul 17;65(13):3609-21. Epub 2014 Mar 17.

Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman St., Providence, RI 02912, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jxb/eru087DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085957PMC
July 2014

Evolution of fruit development genes in flowering plants.

Front Plant Sci 2014 26;5:300. Epub 2014 Jun 26.

The New York Botanical Garden Bronx, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fpls.2014.00300DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071287PMC
July 2014

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

Bioinformatics 2014 Jun 13;30(12):1660-6. Epub 2014 Feb 13.

School of Bioscience and Bioengineering, South China University of Technology 510006, Guangzhou, China, BGI-Shenzhen, Shenzhen 518083, China, HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory and Department of Computer Science, University of Hong Kong, Pokfulam, Hong Kong, Institute of Biomedical Engineering, XiangYa School of Medicine, Central South University, Changsha 410008, China, BGI-tech, BGI-Shenzhen, Shenzhen 518083, China, Department of Medicine, University of Alberta, Edmonton, AB T6G 2E1, Canada, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China, Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada, The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen DK-2200, Denmark, Department of Biology, University of Copenhagen, Copenhagen DK-2200, Denmark and Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi ArabiaSchool of Bioscience and Bioengineering, South China University of Technology 510006, Guangzhou, China, BGI-Shenzhen, Shenzhen 518083, China, HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory and Department of Computer Science, University of Hong Kong, Pokfulam, Hong Kong, Institute of Biomedical Engineering, XiangYa School of Medicine, Central South University, Changsha 410008, China, BGI-tech, BGI-Shenzhen, Shenzhen 518083, China, Department of Medicine, University of Alberta, Edmonton, AB T6G 2E1, Canada, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China, Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada, The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen DK-2200, Denmark, Department of Biology, University of Copenhagen, Copenhagen DK-2200, Denmark and Princess Al Jawha

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu077DOI Listing
June 2014

Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae.

BMC Genomics 2014 May 15;15:374. Epub 2014 May 15.

Department of Biochemistry and Molecular Biology, Canadian Institute for Advanced Research, Integrated Microbial Biodiversity Program, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-15-374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4035089PMC
May 2014

Next-generation sequencing and bioinformatic approaches to detect and analyze influenza virus in ferrets.

J Infect Dev Ctries 2014 Apr 15;8(4):498-509. Epub 2014 Apr 15.

International Institute of Infection and Immunity, Shantou University Medical College, Shantou, Guangdong, China.

View Article

Download full-text PDF

Source
http://www.jidc.org/index.php/journal/article/view/3749
Publisher Site
http://dx.doi.org/10.3855/jidc.3749DOI Listing
April 2014

Independent optical excitation of distinct neural populations.

Nat Methods 2014 Mar 9;11(3):338-46. Epub 2014 Feb 9.

1] The MIT Media Laboratory, Synthetic Neurobiology Group, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, USA. [2] Department of Biological Engineering, MIT, Cambridge, Massachusetts, USA. [3] MIT Center for Neurobiological Engineering, MIT, Cambridge, Massachusetts, USA. [4] Department of Brain and Cognitive Sciences, MIT, Cambridge, Massachusetts, USA. [5] MIT McGovern Institute for Brain Research, MIT, Cambridge, Massachusetts, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmeth.2836DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3943671PMC
March 2014

A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity.

Science 2014 Feb 16;343(6171):645-8. Epub 2014 Jan 16.

CNRS, Laboratoire de Physiologie Cellulaire et Végétale (LPCV), UMR 5168, 38054 Grenoble, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1248229DOI Listing
February 2014

Phylogeny and evolutionary history of glycogen synthase kinase 3/SHAGGY-like kinase genes in land plants.

BMC Evol Biol 2013 Jul 8;13:143. Epub 2013 Jul 8.

Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, College of Life Sciences, Zhejiang University, Hangzhou, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2148-13-143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3710211PMC
July 2013

Evolutionary transients in the rice transcriptome.

Genomics Proteomics Bioinformatics 2010 Dec;8(4):211-28

Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China.

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S16720229106002
Publisher Site
http://dx.doi.org/10.1016/S1672-0229(10)60023-XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054128PMC
December 2010

The sequence and de novo assembly of the giant panda genome.

Nature 2010 Jan 13;463(7279):311-7. Epub 2009 Dec 13.

BGI-Shenzhen, Shenzhen 518083, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature08696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951497PMC
January 2010

Correlation between Ka/Ks and Ks is related to substitution model and evolutionary lineage.

J Mol Evol 2009 Apr 24;68(4):414-23. Epub 2009 Mar 24.

Beijing Genomics Institute, Shenzhen, Building Complex, BeiShan Industrial Zone, Yantian District, Shenzhen, 518083, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00239-009-9222-9DOI Listing
April 2009

Metagenomics and the case of the deadly hamster.

Hepatology 2008 Aug;48(2):679-83

Department of Medicine, University of Alberta, Edmonton, Canada.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/hep.22452DOI Listing
August 2008

Gene conversion in the rice genome.

BMC Genomics 2008 Feb 25;9:93. Epub 2008 Feb 25.

Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, Beijing 101300, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-9-93DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2277409PMC
February 2008

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature06341DOI Listing
November 2007

A cross-species alignment tool (CAT).

BMC Bioinformatics 2007 Sep 19;8:349. Epub 2007 Sep 19.

Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing 101300, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-8-349DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2082505PMC
September 2007

A comprehensive crop genome research project: the Superhybrid Rice Genome Project in China.

Philos Trans R Soc Lond B Biol Sci 2007 Jun;362(1482):1023-34

Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 101300, People's Republic of China.

View Article

Download full-text PDF

Source
http://www.royalsocietypublishing.org/doi/10.1098/rstb.2007.
Publisher Site
http://dx.doi.org/10.1098/rstb.2007.2031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2435568PMC
June 2007

Identification and characterization of insect-specific proteins by genome data analysis.

BMC Genomics 2007 Apr 4;8:93. Epub 2007 Apr 4.

State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology Chinese Academy of Sciences, Haidian Beijing 100080, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-8-93DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852559PMC
April 2007

KaKs_Calculator: calculating Ka and Ks through model selection and model averaging.

Genomics Proteomics Bioinformatics 2006 Nov;4(4):259-63

Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/S1672-0229(07)60007-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054075PMC
November 2006

High rate of chimeric gene origination by retroposition in plant genomes.

Plant Cell 2006 Aug 7;18(8):1791-802. Epub 2006 Jul 7.

CAS-Max-Plank Junior Research Group, Key Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.

View Article

Download full-text PDF

Source
http://www.plantcell.org/cgi/doi/10.1105/tpc.106.041905
Publisher Site
http://dx.doi.org/10.1105/tpc.106.041905DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1533979PMC
August 2006

Comparing the whole-genome-shotgun and map-based sequences of the rice genome.

Trends Plant Sci 2006 Aug 13;11(8):387-91. Epub 2006 Jul 13.

Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing 101300, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.tplants.2006.06.005DOI Listing
August 2006

TreeFam: a curated database of phylogenetic trees of animal gene families.

Nucleic Acids Res 2006 Jan;34(Database issue):D572-80

Beijing Institute of Genomics of the Chinese Academy of Sciences, Beijing Genomics Institute, Beijing 101300, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkj118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347480PMC
January 2006

Origin and evolution of new exons in rodents.

Genome Res 2005 Sep 18;15(9):1258-64. Epub 2005 Aug 18.

CAS-Max Planck Junior Research Group, Key Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China.

View Article

Download full-text PDF

Source
http://www.genome.org/cgi/doi/10.1101/gr.3929705
Publisher Site
http://dx.doi.org/10.1101/gr.3929705DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1199540PMC
September 2005

ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun.

PLoS Comput Biol 2005 Sep 23;1(4):e43. Epub 2005 Sep 23.

James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.0010043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1232128PMC
September 2005

The Genomes of Oryza sativa: a history of duplications.

PLoS Biol 2005 Feb 1;3(2):e38. Epub 2005 Feb 1.

Beijing Institute of Genomics of the Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.0030038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546038PMC
February 2005

Genome biology: the second modern synthesis.

Genomics Proteomics Bioinformatics 2005 Feb;3(1):3-4

Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5172466PMC
http://dx.doi.org/10.1016/s1672-0229(05)03002-0DOI Listing
February 2005

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms.

Nature 2004 Dec;432(7018):717-22

Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, Beijing 101300, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature03156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2263125PMC
December 2004

Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs.

Nature 2004 Oct;431(7010):1 p following 757; discussion following 757

James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou 310007, China.

View Article

Download full-text PDF

Source
October 2004

BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.

Nucleic Acids Res 2004 Jan;32(Database issue):D377-82

Beijing Genomics Institute (BGI), Chinese Academy of Sciences (CAS), Beijing Airport Industrial Zone-B6, Beijing 101300, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkh085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308819PMC
January 2004