Gajendra P S Raghava

Gajendra P S Raghava

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Publications by authors named "Gajendra P S Raghava"

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APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018.

BMC Genomics 2019 Apr 18;19(Suppl 9):266. Epub 2019 Apr 18.

Department of Molecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia.

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http://dx.doi.org/10.1186/s12864-019-5582-8DOI Listing
April 2019

HumCFS: a database of fragile sites in human chromosomes.

BMC Genomics 2019 Apr 18;19(Suppl 9):985. Epub 2019 Apr 18.

Center for Computational Biology, Indraprastha Institute of Information Technology, New Delhi, 110020, India.

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https://bmcgenomics.biomedcentral.com/articles/10.1186/s1286
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http://dx.doi.org/10.1186/s12864-018-5330-5DOI Listing
April 2019

NeuroPIpred: a tool to predict, design and scan insect neuropeptides.

Sci Rep 2019 Mar 26;9(1):5129. Epub 2019 Mar 26.

Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, New Delhi, 110019, India.

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http://dx.doi.org/10.1038/s41598-019-41538-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6435694PMC
March 2019

Benchmarking of different molecular docking methods for protein-peptide docking.

BMC Bioinformatics 2019 Feb 4;19(Suppl 13):426. Epub 2019 Feb 4.

Center for Computation Biology, Indraprastha Institute of Information Technology, Okhla Phase III, New Delhi, 110020, India.

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http://dx.doi.org/10.1186/s12859-018-2449-yDOI Listing
February 2019

ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank.

Database (Oxford) 2019 01 1;2019. Epub 2019 Jan 1.

Department of Computational Biology, Indraprastha Institute of Information Technology, Okhla Industrial Estate, Phase III, New Delhi, India.

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https://academic.oup.com/database/article/doi/10.1093/databa
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http://dx.doi.org/10.1093/database/bay142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343045PMC
January 2019

ImmunoSPdb: an archive of immunosuppressive peptides.

Database (Oxford) 2019 01 1;2019. Epub 2019 Jan 1.

Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.

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http://dx.doi.org/10.1093/database/baz012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6367516PMC
January 2019

PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands.

Database (Oxford) 2019 Jan;2019

Department of Computational Biology, Indraprastha Institute of Information Technology, Delhi, New Delhi 110020, India.

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http://dx.doi.org/10.1093/database/baz076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597477PMC
January 2019

Overview of Free Software Developed for Designing Drugs Based on Protein-Small Molecules Interaction.

Curr Top Med Chem 2018 ;18(13):1146-1167

Center for Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.

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http://www.eurekaselect.com/164715/article
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http://dx.doi.org/10.2174/1568026618666180816155131DOI Listing
October 2018

A Web Resource for Designing Subunit Vaccine Against Major Pathogenic Species of Bacteria.

Front Immunol 2018 2;9:2280. Epub 2018 Oct 2.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India.

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https://www.frontiersin.org/article/10.3389/fimmu.2018.02280
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http://dx.doi.org/10.3389/fimmu.2018.02280DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6190870PMC
October 2018

Prediction of Antimicrobial Potential of a Chemically Modified Peptide From Its Tertiary Structure.

Front Microbiol 2018 26;9:2551. Epub 2018 Oct 26.

Center for Computational Biology, Indraprastha Institute of Information Technology, Delhi, New Delhi, India.

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http://dx.doi.org/10.3389/fmicb.2018.02551DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6212470PMC
October 2018

Prediction of Antitubercular Peptides From Sequence Information Using Ensemble Classifier and Hybrid Features.

Front Pharmacol 2018 28;9:954. Epub 2018 Aug 28.

Center for Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.

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http://dx.doi.org/10.3389/fphar.2018.00954DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6121089PMC
August 2018

Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants.

J Transl Med 2018 07 3;16(1):181. Epub 2018 Jul 3.

Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, 160036, India.

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http://dx.doi.org/10.1186/s12967-018-1560-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6029051PMC
July 2018

TopicalPdb: A database of topically delivered peptides.

PLoS One 2018 12;13(2):e0190134. Epub 2018 Feb 12.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0190134PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5809007PMC
March 2018

In Silico Tools and Databases for Designing Peptide-Based Vaccine and Drugs.

Adv Protein Chem Struct Biol 2018 5;112:221-263. Epub 2018 Mar 5.

Center for Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India; Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India. Electronic address:

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http://dx.doi.org/10.1016/bs.apcsb.2018.01.006DOI Listing
March 2018

Approach for Prediction of Antifungal Peptides.

Front Microbiol 2018 26;9:323. Epub 2018 Feb 26.

Council of Scientific and Industrial Research, Institute of Microbial Technology, Chandigarh, India.

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http://journal.frontiersin.org/article/10.3389/fmicb.2018.00
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http://dx.doi.org/10.3389/fmicb.2018.00323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834480PMC
February 2018

AntiTbPdb: a knowledgebase of anti-tubercular peptides.

Database (Oxford) 2018 01;2018

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh - 160036, India.

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http://dx.doi.org/10.1093/database/bay025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5829563PMC
January 2018

CancerPDF: A repository of cancer-associated peptidome found in human biofluids.

Sci Rep 2017 05 4;7(1):1511. Epub 2017 May 4.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, 160036, India.

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http://dx.doi.org/10.1038/s41598-017-01633-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5431423PMC
May 2017

Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer.

Sci Rep 2017 03 28;7:44997. Epub 2017 Mar 28.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh-160036, India.

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http://dx.doi.org/10.1038/srep44997DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5368637PMC
March 2017

Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential.

Sci Rep 2017 02 17;7:42851. Epub 2017 Feb 17.

CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, - 160036 India.

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http://dx.doi.org/10.1038/srep42851DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5314457PMC
February 2017

Managing Drug Resistance in Cancer: Role of Cancer Informatics.

Methods Mol Biol 2016 ;1395:299-312

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, 160036, India.

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http://dx.doi.org/10.1007/978-1-4939-3347-1_17DOI Listing
November 2016

PEPlife: A Repository of the Half-life of Peptides.

Sci Rep 2016 11 7;6:36617. Epub 2016 Nov 7.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India.

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http://dx.doi.org/10.1038/srep36617DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5098197PMC
November 2016

Designing B-Cell Epitopes for Immunotherapy and Subunit Vaccines.

Methods Mol Biol 2015 ;1348:327-40

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector-39A, Chandigarh, 160036, India.

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http://link.springer.com/content/pdf/10.1007/978-1-4939-2999
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http://link.springer.com/10.1007/978-1-4939-2999-3_28
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http://dx.doi.org/10.1007/978-1-4939-2999-3_28DOI Listing
June 2016

AntiAngioPred: A Server for Prediction of Anti-Angiogenic Peptides.

PLoS One 2015 3;10(9):e0136990. Epub 2015 Sep 3.

Chemical Laboratory, Central Leather Research Institute, Council of Scientific and Industrial Research, Adyar, Chennai, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136990PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4559406PMC
May 2016

ProCarDB: a database of bacterial carotenoids.

BMC Microbiol 2016 May 26;16:96. Epub 2016 May 26.

Infectious Diseases and Immunity, Council of Scientific and Industrial Research, Institute of Microbial Technology, Sector 39 A, 160036, Chandigarh, India.

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http://dx.doi.org/10.1186/s12866-016-0715-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4882832PMC
May 2016

A web-based resource for designing therapeutics against Ebola Virus.

Sci Rep 2016 04 26;6:24782. Epub 2016 Apr 26.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.

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http://dx.doi.org/10.1038/srep24782DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4845023PMC
April 2016

A Web Server and Mobile App for Computing Hemolytic Potency of Peptides.

Sci Rep 2016 Mar 8;6:22843. Epub 2016 Mar 8.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.

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http://dx.doi.org/10.1038/srep22843DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4782144PMC
March 2016

A web server for analysis, comparison and prediction of protein ligand binding sites.

Biol Direct 2016 Mar 25;11(1):14. Epub 2016 Mar 25.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, 160036, India.

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http://dx.doi.org/10.1186/s13062-016-0118-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4807588PMC
March 2016

Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines.

BMC Cancer 2016 Feb 9;16:77. Epub 2016 Feb 9.

Bioinformatics Centre, Institute of Microbial Technology, Sector 39-A, Chandigarh, India.

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http://dx.doi.org/10.1186/s12885-016-2082-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748564PMC
February 2016

ApoCanD: Database of human apoptotic proteins in the context of cancer.

Sci Rep 2016 Feb 10;6:20797. Epub 2016 Feb 10.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, India.

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http://dx.doi.org/10.1038/srep20797DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748276PMC
February 2016

SATPdb: a database of structurally annotated therapeutic peptides.

Nucleic Acids Res 2016 Jan 2;44(D1):D1119-26. Epub 2015 Nov 2.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India

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http://dx.doi.org/10.1093/nar/gkv1114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702810PMC
January 2016

CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides.

Nucleic Acids Res 2016 Jan 19;44(D1):D1098-103. Epub 2015 Nov 19.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh 160036, India

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http://dx.doi.org/10.1093/nar/gkv1266DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702894PMC
January 2016

dbEM: A database of epigenetic modifiers curated from cancerous and normal genomes.

Sci Rep 2016 Jan 18;6:19340. Epub 2016 Jan 18.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, India.

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http://dx.doi.org/10.1038/srep19340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4726101PMC
January 2016

BLAST-based structural annotation of protein residues using Protein Data Bank.

Biol Direct 2016 Jan 25;11(1). Epub 2016 Jan 25.

Bioinformatics Centre, Institute of Microbial Technology, Sector 39-A, Chandigarh, India.

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http://dx.doi.org/10.1186/s13062-016-0106-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4727276PMC
January 2016

PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues.

Biol Direct 2015 Dec 21;10:73. Epub 2015 Dec 21.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sec 39-A, Chandigarh, 160036, India.

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http://dx.doi.org/10.1186/s13062-015-0103-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4687368PMC
December 2015

Evaluation of protein dihedral angle prediction methods.

PLoS One 2014 28;9(8):e105667. Epub 2014 Aug 28.

Bioinformatics Center, Institute of Microbial Technology, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0105667PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148315PMC
October 2015

Peptide toxicity prediction.

Methods Mol Biol 2015 ;1268:143-57

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, 160036, India.

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http://dx.doi.org/10.1007/978-1-4939-2285-7_7DOI Listing
August 2015

VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants.

Sci Rep 2015 Jul 27;5:12478. Epub 2015 Jul 27.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, INDIA.

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http://dx.doi.org/10.1038/srep12478DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4515643PMC
July 2015

An in silico platform for predicting, screening and designing of antihypertensive peptides.

Sci Rep 2015 Jul 27;5:12512. Epub 2015 Jul 27.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, India.

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http://dx.doi.org/10.1038/srep12512DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4515604PMC
July 2015

Assessment of SYBR green I dye-based fluorescence assay for screening antimalarial activity of cationic peptides and DNA intercalating agents.

Antimicrob Agents Chemother 2015 May 17;59(5):2886-9. Epub 2015 Feb 17.

Cell Biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh, India

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http://dx.doi.org/10.1128/AAC.03266-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394797PMC
May 2015

In silico platform for predicting and initiating β-turns in a protein at desired locations.

Proteins 2015 May 25;83(5):910-21. Epub 2015 Mar 25.

Bioinformatics Center, Institute of Microbial Technology, Chandigarh, India.

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http://doi.wiley.com/10.1002/prot.24783
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http://dx.doi.org/10.1002/prot.24783DOI Listing
May 2015

Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides.

Genomics 2015 Apr 30;105(4):197-203. Epub 2015 Jan 30.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India. Electronic address: http://www.imtech.res.in/raghava/

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http://dx.doi.org/10.1016/j.ygeno.2015.01.005DOI Listing
April 2015

QSAR based model for discriminating EGFR inhibitors and non-inhibitors using Random forest.

Biol Direct 2015 Mar 25;10:10. Epub 2015 Mar 25.

Bioinformatics Center, Institute of Microbial Technology, Sector 39-A, Chandigarh, India.

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http://dx.doi.org/10.1186/s13062-015-0046-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4372225PMC
March 2015

AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides.

Nucleic Acids Res 2015 Jan 11;43(Database issue):D956-62. Epub 2014 Nov 11.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh 160036, India

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http://dx.doi.org/10.1093/nar/gku1141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383949PMC
January 2015

Identification and characterization of novel protein-derived arginine-rich cell-penetrating peptides.

Eur J Pharm Biopharm 2015 Jan 29;89:93-106. Epub 2014 Nov 29.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India. Electronic address:

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http://dx.doi.org/10.1016/j.ejpb.2014.11.020DOI Listing
January 2015

Prediction of uridine modifications in tRNA sequences.

BMC Bioinformatics 2014 Oct 2;15:326. Epub 2014 Oct 2.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2105-15-326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287530PMC
October 2014

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures.

Database (Oxford) 2014 12;2014. Epub 2014 Jun 12.

Cell biology and Immunology Division and Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, India

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http://dx.doi.org/10.1093/database/bau051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054663PMC
August 2014

Designing of promiscuous inhibitors against pancreatic cancer cell lines.

Sci Rep 2014 Apr 14;4:4668. Epub 2014 Apr 14.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, India.

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http://dx.doi.org/10.1038/srep04668DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3985076PMC
April 2014

Open source software and web services for designing therapeutic molecules.

Curr Top Med Chem 2013 ;13(10):1172-91

Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India.

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February 2014

Prediction and classification of ncRNAs using structural information.

BMC Genomics 2014 Feb 13;15:127. Epub 2014 Feb 13.

Bioinformatics Centre, Institute of Microbial Technology (CSIR), Sector 39A, Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2164-15-127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3925371PMC
February 2014

PCMdb: pancreatic cancer methylation database.

Sci Rep 2014 Feb 26;4:4197. Epub 2014 Feb 26.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, India.

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http://dx.doi.org/10.1038/srep04197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935225PMC
February 2014

In silico platform for prediction of N-, O- and C-glycosites in eukaryotic protein sequences.

PLoS One 2013 28;8(6):e67008. Epub 2013 Jun 28.

Bioinformatic Centre, Institute of Microbial Technology, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0067008PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3695939PMC
January 2014

Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides.

Nucleic Acids Res 2014 Jan 29;42(Database issue):D444-9. Epub 2013 Oct 29.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh 160036, India and Cell Biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh 160036, India.

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http://dx.doi.org/10.1093/nar/gkt1008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964980PMC
January 2014

Improved method for linear B-cell epitope prediction using antigen's primary sequence.

PLoS One 2013 7;8(5):e62216. Epub 2013 May 7.

Bioinformatics Center, Institute of Microbial Technology, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0062216PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3646881PMC
December 2013

Designing of interferon-gamma inducing MHC class-II binders.

Biol Direct 2013 Dec 5;8:30. Epub 2013 Dec 5.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh 160036, India.

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http://dx.doi.org/10.1186/1745-6150-8-30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4235049PMC
December 2013

Development of a model webserver for breed identification using microsatellite DNA marker.

BMC Genet 2013 Dec 9;14:118. Epub 2013 Dec 9.

Centre for Agricultural Bioinformatics, Indian Agricultural Statistics Research Institute, Library Avenue, PUSA, New Delhi 110012, India.

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http://dx.doi.org/10.1186/1471-2156-14-118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890620PMC
December 2013

DrugMint: a webserver for predicting and designing of drug-like molecules.

Biol Direct 2013 Nov 5;8:28. Epub 2013 Nov 5.

Institute of Microbial Technology, Chandigarh, India.

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http://dx.doi.org/10.1186/1745-6150-8-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3826839PMC
November 2013

Computational approach for designing tumor homing peptides.

Sci Rep 2013 ;3:1607

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, India.

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http://dx.doi.org/10.1038/srep01607DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617442PMC
October 2013

Hybrid approach for predicting coreceptor used by HIV-1 from its V3 loop amino acid sequence.

PLoS One 2013 15;8(4):e61437. Epub 2013 Apr 15.

Bioinformatics Centre, Institute of Microbial Technology-Council of Scientific and Industrial Research, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0061437PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3626595PMC
October 2013

Identification of B-cell epitopes in an antigen for inducing specific class of antibodies.

Biol Direct 2013 Oct 30;8:27. Epub 2013 Oct 30.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh 160036, India.

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http://dx.doi.org/10.1186/1745-6150-8-27DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3831251PMC
October 2013

CancerDR: cancer drug resistance database.

Sci Rep 2013 ;3:1445

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh-160036, India.

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http://www.nature.com/articles/srep01445
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http://dx.doi.org/10.1038/srep01445DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3595698PMC
September 2013

In silico models for B-cell epitope recognition and signaling.

Methods Mol Biol 2013 ;993:129-38

Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India.

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http://dx.doi.org/10.1007/978-1-62703-342-8_9DOI Listing
September 2013

GlycoPP: a webserver for prediction of N- and O-glycosites in prokaryotic protein sequences.

PLoS One 2012 9;7(7):e40155. Epub 2012 Jul 9.

Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0040155PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392279PMC
March 2013

In silico approaches for designing highly effective cell penetrating peptides.

J Transl Med 2013 Mar 22;11:74. Epub 2013 Mar 22.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh 160036, India.

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http://dx.doi.org/10.1186/1479-5876-11-74DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3615965PMC
March 2013

Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information.

BMC Bioinformatics 2013 Feb 7;14:44. Epub 2013 Feb 7.

Bioinformatics Centre, Institute of Microbial Technology (CSIR), Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2105-14-44DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3577447PMC
February 2013

NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D1124-9. Epub 2012 Nov 29.

Bioinformatics Division, Institute of Cytology and Preventive Oncology, I-7 Sector-39, Noida-201301, India.

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http://dx.doi.org/10.1093/nar/gks1047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531140PMC
January 2013

PolysacDB: a database of microbial polysaccharide antigens and their antibodies.

PLoS One 2012 11;7(4):e34613. Epub 2012 Apr 11.

Cell Biology and Immunology Division, Institute of Microbial Technology, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034613PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3324500PMC
August 2012

TumorHoPe: a database of tumor homing peptides.

PLoS One 2012 16;7(4):e35187. Epub 2012 Apr 16.

Bioinformatics Centre, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035187PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3327652PMC
August 2012

HIVsirDB: a database of HIV inhibiting siRNAs.

PLoS One 2011 11;6(10):e25917. Epub 2011 Oct 11.

Bioinformatics Centre, Institute of Microbial Technology (CSIR), Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0025917PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3191155PMC
February 2012

ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins.

Nucleic Acids Res 2012 Jan 28;40(Database issue):D388-93. Epub 2011 Oct 28.

Protein Science and Engineering, Institute of Microbial Technology, Council of Scientific and Industrial Research, Rajasthan, India.

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http://dx.doi.org/10.1093/nar/gkr911DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245024PMC
January 2012

ccPDB: compilation and creation of data sets from Protein Data Bank.

Nucleic Acids Res 2012 Jan 1;40(Database issue):D486-9. Epub 2011 Dec 1.

Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India.

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http://dx.doi.org/10.1093/nar/gkr1150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245168PMC
January 2012

Designing of highly effective complementary and mismatch siRNAs for silencing a gene.

PLoS One 2011 10;6(8):e23443. Epub 2011 Aug 10.

Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023443PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154470PMC
December 2011

A web server for predicting inhibitors against bacterial target GlmU protein.

BMC Pharmacol 2011 Jul 6;11. Epub 2011 Jul 6.

Institute of Microbial Technology, Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2210-11-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3146400PMC
July 2011

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information.

J Mol Recognit 2011 Mar-Apr;24(2):303-13

Department of Biology, McGill University, Montreal, QC, H3A 1B1, Canada.

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http://dx.doi.org/10.1002/jmr.1061DOI Listing
June 2011

A simple approach for predicting protein-protein interactions.

Curr Protein Pept Sci 2010 Nov;11(7):589-600

Institute of Microbial Technology, Sector 39-A, Chandigarh, India.

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November 2010

Bridging innate and adaptive antitumor immunity targeting glycans.

J Biomed Biotechnol 2010 15;2010:354068. Epub 2010 Jun 15.

Department of Pathology, Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, , Little Rock, AR 72205, USA.

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http://dx.doi.org/10.1155/2010/354068DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896669PMC
October 2010

Prediction and classification of aminoacyl tRNA synthetases using PROSITE domains.

BMC Genomics 2010 Sep 22;11:507. Epub 2010 Sep 22.

Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2164-11-507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2997003PMC
September 2010

Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information.

BMC Bioinformatics 2010 Jun 3;11:301. Epub 2010 Jun 3.

Bioinformatics Centre, Institute of Microbial Technology (IMTECH), Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2105-11-301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3098072PMC
June 2010

BIAdb: a curated database of benzylisoquinoline alkaloids.

BMC Pharmacol 2010 Mar 5;10. Epub 2010 Mar 5.

Bioinformatics Centre, Institute of Microbial Technology (CSIR), Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2210-10-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2844369PMC
March 2010

KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials.

BMC Bioinformatics 2010 Mar 11;11:125. Epub 2010 Mar 11.

Bioinformatics Centre, Institute of Microbial Technology, Sector-39A, Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2105-11-125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2841597PMC
March 2010

Identification of NAD interacting residues in proteins.

BMC Bioinformatics 2010 Mar 30;11:160. Epub 2010 Mar 30.

Institute of Microbial Technology, Sector 39A, Chandigarh, 160036, India.

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http://dx.doi.org/10.1186/1471-2105-11-160DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2853471PMC
March 2010

AntiBP2: improved version of antibacterial peptide prediction.

BMC Bioinformatics 2010 Jan 18;11 Suppl 1:S19. Epub 2010 Jan 18.

Institute of Microbial Technology, Sector 39A, Chandigarh, India.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-11-S1-S19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3009489PMC
January 2010

Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information.

BMC Bioinformatics 2010 Jan 18;11 Suppl 1:S48. Epub 2010 Jan 18.

Institute of Microbial Technology, Sector 39A, Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2105-11-S1-S48DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3009520PMC
January 2010

Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis.

BMC Bioinformatics 2010 Jan 18;11 Suppl 1:S53. Epub 2010 Jan 18.

Bioinformatics Centre, Institute of Microbial Technology, Sector-39A, Chandigarh, India.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-11-S1-S53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3009526PMC
January 2010

Identification of ATP binding residues of a protein from its primary sequence.

BMC Bioinformatics 2009 Dec 19;10:434. Epub 2009 Dec 19.

Institute of Microbial Technology, Chandigarh, India.

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http://dx.doi.org/10.1186/1471-2105-10-434DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803200PMC
December 2009

Prediction of polyadenylation signals in human DNA sequences using nucleotide frequencies.

In Silico Biol 2009 ;9(3):135-48

Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India.

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October 2009