Gael Varoquaux

Gael Varoquaux

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Gael Varoquaux

Gael Varoquaux

Publications by authors named "Gael Varoquaux"

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Brain-based ranking of cognitive domains to predict schizophrenia.

Hum Brain Mapp 2019 Oct 16;40(15):4487-4507. Epub 2019 Jul 16.

Department of Psychiatry, Psychotherapy and Psychosomatics, Faculty of Medicine, RWTH Aachen, Aachen, Germany.

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http://dx.doi.org/10.1002/hbm.24716DOI Listing
October 2019

Benchmarking functional connectome-based predictive models for resting-state fMRI.

Neuroimage 2019 05 2;192:115-134. Epub 2019 Mar 2.

Parietal Project-team, INRIA Saclay-île de France, France; CEA/Neurospin bât 145, 91191, Gif-Sur-Yvette, France.

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http://dx.doi.org/10.1016/j.neuroimage.2019.02.062DOI Listing
May 2019

Population shrinkage of covariance (PoSCE) for better individual brain functional-connectivity estimation.

Med Image Anal 2019 May 15;54:138-148. Epub 2019 Mar 15.

Parietal Team, INRIA/CEA, Paris-Saclay University, 1 rue Honoré d'Estienne d'Orves, Palaiseau, 91120, France. Electronic address:

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http://dx.doi.org/10.1016/j.media.2019.03.001DOI Listing
May 2019

Predictive models avoid excessive reductionism in cognitive neuroimaging.

Curr Opin Neurobiol 2019 04 2;55:1-6. Epub 2018 Dec 2.

Department of Psychology, Stanford University, Stanford, CA, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S09594388183010
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http://dx.doi.org/10.1016/j.conb.2018.11.002DOI Listing
April 2019

Recursive Nearest Agglomeration (ReNA): Fast Clustering for Approximation of Structured Signals.

IEEE Trans Pattern Anal Mach Intell 2019 Mar 13;41(3):669-681. Epub 2018 Mar 13.

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http://dx.doi.org/10.1109/TPAMI.2018.2815524DOI Listing
March 2019

Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants.

Proc Natl Acad Sci U S A 2018 11 12;115(48):12295-12300. Epub 2018 Nov 12.

Department of Psychiatry, Psychotherapy and Psychosomatics, RWTH Aachen University, 52072 Aachen, Germany;

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http://dx.doi.org/10.1073/pnas.1804876115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6275484PMC
November 2018

Cross-validation failure: Small sample sizes lead to large error bars.

Authors:
Gaël Varoquaux

Neuroimage 2018 10 24;180(Pt A):68-77. Epub 2017 Jun 24.

Parietal Project-team, INRIA Saclay-île de France, France; CEA/Neurospin bât 145, 91191 Gif-Sur-Yvette, France; Université Paris-Saclay, Saclay, France. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2017.06.061DOI Listing
October 2018

Decoding fMRI activity in the time domain improves classification performance.

Neuroimage 2018 10 9;180(Pt A):203-210. Epub 2017 Aug 9.

Parietal Team - Inria/CEA, Paris Saclay University, France.

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http://dx.doi.org/10.1016/j.neuroimage.2017.08.018DOI Listing
October 2018

FReM - Scalable and stable decoding with fast regularized ensemble of models.

Neuroimage 2018 10 10;180(Pt A):160-172. Epub 2017 Oct 10.

Parietal project-team, INRIA, Saclay-île de, France; CEA/Neurospin bât 145, 91191, Gif-Sur-Yvette, France.

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http://dx.doi.org/10.1016/j.neuroimage.2017.10.005DOI Listing
October 2018

Patterns of schizophrenia symptoms: hidden structure in the PANSS questionnaire.

Transl Psychiatry 2018 10 30;8(1):237. Epub 2018 Oct 30.

Department of Psychiatry, Psychotherapy, and Psychosomatics, RWTH Aachen University, Aachen, Germany.

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http://www.nature.com/articles/s41398-018-0294-4
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http://dx.doi.org/10.1038/s41398-018-0294-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6207565PMC
October 2018

Distinct alterations in Parkinson's medication-state and disease-state connectivity.

Neuroimage Clin 2017 6;16:575-585. Epub 2017 Sep 6.

Department of Neurology & Neurological Sciences, Stanford University School of Medicine, Stanford, CA, United States.

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http://dx.doi.org/10.1016/j.nicl.2017.09.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5608603PMC
June 2018

Inter-subject Registration of Functional Images: Do We Need Anatomical Images?

Front Neurosci 2018 14;12:64. Epub 2018 Feb 14.

Parietal Team, INRIA, CEA, Université Paris-Saclay, Gif-sur-Yvette, France.

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http://dx.doi.org/10.3389/fnins.2018.00064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819565PMC
February 2018

Spatial vs. Temporal Features in ICA of Resting-State fMRI - A Quantitative and Qualitative Investigation in the Context of Response Inhibition.

PLoS One 2013 18;8(6):e66572. Epub 2013 Jun 18.

Department of Biomedical Engineering, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, China ; FMRIB (Oxford University Centre for Functional MRI of the Brain), Nuffield Dept. Clinical Neurosciences, University of Oxford, Oxford, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0066572PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3688987PMC
October 2017

Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-Sample Generalization.

Educ Psychol Meas 2017 Oct 6;77(5):868-880. Epub 2016 Oct 6.

INRIA, Neurospin, Gif-sur-Yvette, Paris, France.

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http://dx.doi.org/10.1177/0013164416667982DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5965634PMC
October 2017

Joint prediction of multiple scores captures better individual traits from brain images.

Neuroimage 2017 09 1;158:145-154. Epub 2017 Jul 1.

Parietal Team - Inria, CEA - Paris Saclay University, France.

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http://dx.doi.org/10.1016/j.neuroimage.2017.06.072DOI Listing
September 2017

Hierarchical Region-Network Sparsity for High-Dimensional Inference in Brain Imaging.

Inf Process Med Imaging 2017 Jun 23;10265:323-335. Epub 2017 May 23.

INRIA, Parietal team, Saclay, France.

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http://dx.doi.org/10.1007/978-3-319-59050-9_26DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5937695PMC
June 2017

Seeing it all: Convolutional network layers map the function of the human visual system.

Neuroimage 2017 05 21;152:184-194. Epub 2016 Oct 21.

Inria Parietal Team, Inria Saclay, France; Neurospin, I2BM, DSV, CEA Saclay, France.

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http://dx.doi.org/10.1016/j.neuroimage.2016.10.001DOI Listing
May 2017

Using and understanding cross-validation strategies. Perspectives on Saeb et al.

Gigascience 2017 05;6(5):1-6

Department of Preventive Medicine, Northwestern University, 750 N Lake Shore Dr, 60611, Chicago, USA.

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http://dx.doi.org/10.1093/gigascience/gix020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441396PMC
May 2017

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example.

Neuroimage 2017 02 16;147:736-745. Epub 2016 Nov 16.

Parietal Team, Saclay-INRIA le-de-France,Saclay,France; CEA, Neurospin bât 145, 91191 Gif-Sur-Yvette, France.

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http://dx.doi.org/10.1016/j.neuroimage.2016.10.045DOI Listing
February 2017

Assessing and tuning brain decoders: Cross-validation, caveats, and guidelines.

Neuroimage 2017 01 29;145(Pt B):166-179. Epub 2016 Oct 29.

Parietal project-team, INRIA Saclay-ile de France, France; CEA/Neurospin bât 145, 91191 Gif-Sur-Yvette, France.

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http://dx.doi.org/10.1016/j.neuroimage.2016.10.038DOI Listing
January 2017

Exploring the anatomical encoding of voice with a mathematical model of the vocal system.

Neuroimage 2016 Nov 17;141:31-39. Epub 2016 Jul 17.

Department of Physics, University of Buenos Aires-IFIBA CONICET, Ciudad Universitaria, Pab. 1, 1428EGA, Buenos Aires, Argentina. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2016.07.033DOI Listing
November 2016

Transmodal Learning of Functional Networks for Alzheimer's Disease Prediction.

IEEE J Sel Top Signal Process 2016 Oct 15;10(7):120-1213. Epub 2016 Aug 15.

Parietal project team - INRIA Saclay and CEA Saclay DRF/I2BM/NeuroSpin. Paris-Saclay University. France.

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http://dx.doi.org/10.1109/JSTSP.2016.2600400DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5421559PMC
October 2016

Formal Models of the Network Co-occurrence Underlying Mental Operations.

PLoS Comput Biol 2016 06 16;12(6):e1004994. Epub 2016 Jun 16.

Parietal team, INRIA, Neurospin, bat 145, CEA Saclay, Gif-sur-Yvette, France.

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http://dx.doi.org/10.1371/journal.pcbi.1004994DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911040PMC
June 2016

Identification of Mood-Relevant Brain Connections Using a Continuous, Subject-Driven Rumination Paradigm.

Cereb Cortex 2016 Mar 19;26(3):933-942. Epub 2014 Oct 19.

Department of Neurology and Neurological Sciences, Functional Imaging in Neuropsychiatric Disorders (FIND) Laboratory,Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1093/cercor/bhu255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4737600PMC
March 2016

Transport on Riemannian Manifold for Connectivity-Based Brain Decoding.

IEEE Trans Med Imaging 2016 Jan 3;35(1):208-16. Epub 2015 Aug 3.

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http://dx.doi.org/10.1109/TMI.2015.2463723DOI Listing
January 2016

Connectivity-based parcellation: Critique and implications.

Hum Brain Mapp 2015 Dec 27;36(12):4771-92. Epub 2015 Sep 27.

Institut Für Neurowissenschaften Und Medizin (INM-1), Forschungszentrum Jülich GmbH, Jülich, 52425, Germany.

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https://hal.archives-ouvertes.fr/hal-01184563/file/cbp_criti
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http://doi.wiley.com/10.1002/hbm.22933
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http://dx.doi.org/10.1002/hbm.22933DOI Listing
December 2015

Robust regression for large-scale neuroimaging studies.

Neuroimage 2015 May 28;111:431-41. Epub 2015 Feb 28.

Parietal Team, INRIA Saclay-Île-de-France, Saclay, France; CEA, DSV, I2BM, Neurospin bât 145, 91191 Gif-Sur-Yvette, France; Universitaetsklinikum Hamburg Eppendorf, Hamburg, Germany; School of Physics and Astronomy, University of Nottingham, United Kingdom; AP-HP Department of Adolescent Psychopathology and Medicine, Maison de Solenn, University Paris Descartes, Paris, France; The Hospital for Sick Children, University of Toronto, Toronto, Canada; Behavioural and Clinical Neurosciences Institute, Department of Experimental Psychology, University of Cambridge, United Kingdom; Department of Psychiatry and Psychotherapy, Technische Universität Dresden, Germany; Neuroimaging Center, Technische Universität Dresden, Germany.

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http://ac.els-cdn.com/S1053811915001494/1-s2.0-S105381191500
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http://search.proquest.com/openview/659c7ed271158a835632aa4f
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http://dx.doi.org/10.1016/j.neuroimage.2015.02.048DOI Listing
May 2015

Group-PCA for very large fMRI datasets.

Neuroimage 2014 Nov 3;101:738-49. Epub 2014 Aug 3.

FMRIB (Oxford University Centre for Functional MRI of the Brain), University of Oxford, UK; Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands.

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http://dx.doi.org/10.1016/j.neuroimage.2014.07.051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289914PMC
November 2014

Deriving a multi-subject functional-connectivity atlas to inform connectome estimation.

Med Image Comput Comput Assist Interv 2014 ;17(Pt 3):185-92

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http://dx.doi.org/10.1007/978-3-319-10443-0_24DOI Listing
November 2014

How machine learning is shaping cognitive neuroimaging.

Gigascience 2014 17;3:28. Epub 2014 Nov 17.

Parietal, INRIA, NeuroSpin, bat 145 CEA Saclay, 91191 Gif sur Yvette, France.

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http://dx.doi.org/10.1186/2047-217X-3-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4234525PMC
November 2014

Which fMRI clustering gives good brain parcellations?

Front Neurosci 2014 1;8:167. Epub 2014 Jul 1.

Commissariat à l'énergie Atomique et Aux Énergies Alternatives, DSV, Neurospin, I2 BM Gif-sur-Yvette, France ; Henry H. Wheeler Jr. Brain Imaging Center, University of California at Berkeley Berkeley, CA, USA.

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http://dx.doi.org/10.3389/fnins.2014.00167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076743PMC
July 2014

Randomized parcellation based inference.

Neuroimage 2014 Apr 19;89:203-15. Epub 2013 Nov 19.

Parietal Team, INRIA Saclay-Île-de-France, Saclay, France; CEA, DSV, I(2)BM, Neurospin bât 145, 91191 Gif-Sur-Yvette, France. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2013.11.012DOI Listing
April 2014

Enhancing the reproducibility of group analysis with randomized brain parcellations.

Med Image Comput Comput Assist Interv 2013 ;16(Pt 2):591-8

Parietal Team, INRIA Saclay-Ile-de-France, Saclay, France.

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http://dx.doi.org/10.1007/978-3-642-40763-5_73DOI Listing
April 2014

Extracting brain regions from rest fMRI with total-variation constrained dictionary learning.

Med Image Comput Comput Assist Interv 2013 ;16(Pt 2):607-15

Parietal Team, INRIA Saclay-Ile-de-France, Saclay, France.

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http://dx.doi.org/10.1007/978-3-642-40763-5_75DOI Listing
April 2014

Machine learning for neuroimaging with scikit-learn.

Front Neuroinform 2014 21;8:14. Epub 2014 Feb 21.

Parietal Team, INRIA Saclay-Île-de-France Saclay, France ; Neurospin, I2 BM, DSV, CEA Gif-Sur-Yvette, France.

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http://dx.doi.org/10.3389/fninf.2014.00014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3930868PMC
March 2014

Implications of inconsistencies between fMRI and dMRI on multimodal connectivity estimation.

Med Image Comput Comput Assist Interv 2013 ;16(Pt 3):652-9

Parietal team, Neurospin, INRIA Saclay, France.

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http://dx.doi.org/10.1007/978-3-642-40760-4_81DOI Listing
February 2014

Learning and comparing functional connectomes across subjects.

Neuroimage 2013 Oct 11;80:405-15. Epub 2013 Apr 11.

Parietal project-team, INRIA Saclay-île de France, France.

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http://dx.doi.org/10.1016/j.neuroimage.2013.04.007DOI Listing
October 2013

Hyperfrontality and hypoconnectivity during refreshing in schizophrenia.

Psychiatry Res 2013 Mar 5;211(3):226-33. Epub 2012 Nov 5.

Inserm U894, Université Paris Descartes, Centre de Psychiatrie et Neurosciences, Centre Hospitalier Sainte-Anne, Paris, France.

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http://dx.doi.org/10.1016/j.pscychresns.2012.09.001DOI Listing
March 2013

A novel sparse graphical approach for multimodal brain connectivity inference.

Med Image Comput Comput Assist Interv 2012 ;15(Pt 1):707-14

Parietal Team, Neurospin, INRIA Saclay-Ile-de-France, France.

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http://dx.doi.org/10.1007/978-3-642-33415-3_87DOI Listing
January 2013

Improving accuracy and power with transfer learning using a meta-analytic database.

Med Image Comput Comput Assist Interv 2012 ;15(Pt 3):248-55

Parietal Team, INRIA Saclay-Ile-de-France, Saclay, France.

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http://dx.doi.org/10.1007/978-3-642-33454-2_31DOI Listing
January 2013

Detecting outliers in high-dimensional neuroimaging datasets with robust covariance estimators.

Med Image Anal 2012 Oct 24;16(7):1359-70. Epub 2012 May 24.

Parietal Team, INRIA Saclay-Île-de-France, Saclay, France.

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http://dx.doi.org/10.1016/j.media.2012.05.002DOI Listing
October 2012

Connectivity-informed fMRI activation detection.

Med Image Comput Comput Assist Interv 2011 ;14(Pt 2):285-92

Biomedical Signal and Image Computing Lab, UBC, Canada.

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http://dx.doi.org/10.1007/978-3-642-23629-7_35DOI Listing
November 2011

Detecting outlying subjects in high-dimensional neuroimaging datasets with regularized minimum covariance determinant.

Med Image Comput Comput Assist Interv 2011 ;14(Pt 3):264-71

Parietal Team, INRIA Saclay-Ile-de-France, Saclay, France.

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http://dx.doi.org/10.1007/978-3-642-23626-6_33DOI Listing
November 2011

A probabilistic framework to infer brain functional connectivity from anatomical connections.

Inf Process Med Imaging 2011 ;22:296-307

Department of Computing, Imperial College London, UK.

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August 2011

Multi-subject dictionary learning to segment an atlas of brain spontaneous activity.

Inf Process Med Imaging 2011 ;22:562-73

INSERM U992, Cognitive Neuroimaging Unit, Saclay, France.

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August 2011

Total variation regularization for fMRI-based prediction of behavior.

IEEE Trans Med Imaging 2011 Jul 10;30(7):1328-40. Epub 2011 Feb 10.

INRIA, Saclay-Ile-de-France, Parietal team, France-CEA/DSV/I2BM/Neurospin/LNAO, Saclay, France.

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http://dx.doi.org/10.1109/TMI.2011.2113378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3336110PMC
July 2011

Detection of brain functional-connectivity difference in post-stroke patients using group-level covariance modeling.

Med Image Comput Comput Assist Interv 2010 ;13(Pt 1):200-8

Parietal Project-Team, INRIA Saclay-ile de France.

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http://dx.doi.org/10.1007/978-3-642-15705-9_25DOI Listing
November 2010

Accurate definition of brain regions position through the functional landmark approach.

Med Image Comput Comput Assist Interv 2010 ;13(Pt 2):241-8

Parietal team, INRIA Saclay-Ile-de-France, Saclay, France.

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http://dx.doi.org/10.1007/978-3-642-15745-5_30DOI Listing
November 2010