Publications by authors named "Gabriel Renaud"

46Publications

Population genomics of the Viking world.

Authors:
Ashot Margaryan Daniel J Lawson Martin Sikora Fernando Racimo Simon Rasmussen Ida Moltke Lara M Cassidy Emil Jørsboe Andrés Ingason Mikkel W Pedersen Thorfinn Korneliussen Helene Wilhelmson Magdalena M Buś Peter de Barros Damgaard Rui Martiniano Gabriel Renaud Claude Bhérer J Víctor Moreno-Mayar Anna K Fotakis Marie Allen Raili Allmäe Martyna Molak Enrico Cappellini Gabriele Scorrano Hugh McColl Alexandra Buzhilova Allison Fox Anders Albrechtsen Berit Schütz Birgitte Skar Caroline Arcini Ceri Falys Charlotte Hedenstierna Jonson Dariusz Błaszczyk Denis Pezhemsky Gordon Turner-Walker Hildur Gestsdóttir Inge Lundstrøm Ingrid Gustin Ingrid Mainland Inna Potekhina Italo M Muntoni Jade Cheng Jesper Stenderup Jilong Ma Julie Gibson Jüri Peets Jörgen Gustafsson Katrine H Iversen Linzi Simpson Lisa Strand Louise Loe Maeve Sikora Marek Florek Maria Vretemark Mark Redknap Monika Bajka Tamara Pushkina Morten Søvsø Natalia Grigoreva Tom Christensen Ole Kastholm Otto Uldum Pasquale Favia Per Holck Sabine Sten Símun V Arge Sturla Ellingvåg Vayacheslav Moiseyev Wiesław Bogdanowicz Yvonne Magnusson Ludovic Orlando Peter Pentz Mads Dengsø Jessen Anne Pedersen Mark Collard Daniel G Bradley Marie Louise Jørkov Jette Arneborg Niels Lynnerup Neil Price M Thomas P Gilbert Morten E Allentoft Jan Bill Søren M Sindbæk Lotte Hedeager Kristian Kristiansen Rasmus Nielsen Thomas Werge Eske Willerslev

Nature 2020 09 16;585(7825):390-396. Epub 2020 Sep 16.

Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.

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September 2020

The repertoire of family A-peptide GPCRs in archaic hominins.

Authors:
Xavier Mata Gabriel Renaud Catherine Mollereau

Peptides 2019 12 24;122:170154. Epub 2019 Sep 24.

Laboratoire Anthropologie Moléculaire et Imagerie de Synthèse (AMIS), Université de Toulouse, CNRS, UPS, Toulouse, France. Electronic address:

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December 2019

A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data.

Authors:
J Víctor Moreno-Mayar Thorfinn Sand Korneliussen Jyoti Dalal Gabriel Renaud Anders Albrechtsen Rasmus Nielsen Anna-Sapfo Malaspinas

Bioinformatics 2020 02;36(3):828-841

Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.

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February 2020

The population history of northeastern Siberia since the Pleistocene.

Authors:
Martin Sikora Vladimir V Pitulko Vitor C Sousa Morten E Allentoft Lasse Vinner Simon Rasmussen Ashot Margaryan Peter de Barros Damgaard Constanza de la Fuente Gabriel Renaud Melinda A Yang Qiaomei Fu Isabelle Dupanloup Konstantinos Giampoudakis David Nogués-Bravo Carsten Rahbek Guus Kroonen Michaël Peyrot Hugh McColl Sergey V Vasilyev Elizaveta Veselovskaya Margarita Gerasimova Elena Y Pavlova Vyacheslav G Chasnyk Pavel A Nikolskiy Andrei V Gromov Valeriy I Khartanovich Vyacheslav Moiseyev Pavel S Grebenyuk Alexander Yu Fedorchenko Alexander I Lebedintsev Sergey B Slobodin Boris A Malyarchuk Rui Martiniano Morten Meldgaard Laura Arppe Jukka U Palo Tarja Sundell Kristiina Mannermaa Mikko Putkonen Verner Alexandersen Charlotte Primeau Nurbol Baimukhanov Ripan S Malhi Karl-Göran Sjögren Kristian Kristiansen Anna Wessman Antti Sajantila Marta Mirazon Lahr Richard Durbin Rasmus Nielsen David J Meltzer Laurent Excoffier Eske Willerslev

Nature 2019 06 5;570(7760):182-188. Epub 2019 Jun 5.

Lundbeck Foundation GeoGenetics Centre, University of Copenhagen, Copenhagen, Denmark.

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June 2019

Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.

Authors:
Gabriel Renaud Kristian Hanghøj Thorfinn Sand Korneliussen Eske Willerslev Ludovic Orlando

Genetics 2019 07 14;212(3):587-614. Epub 2019 May 14.

Lundbeck Foundation GeoGenetics Center, Globe Institute, University of Copenhagen, 1350K, Denmark.

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July 2019

DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage.

Authors:
Kristian Hanghøj Gabriel Renaud Anders Albrechtsen Ludovic Orlando

Gigascience 2019 04;8(4)

Lundbeck Foundation GeoGenetics Center, University of Copenhagen, Øster Voldgade 5-7, 1350K Copenhagen, Denmark.

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April 2019

Authentication and Assessment of Contamination in Ancient DNA.

Authors:
Gabriel Renaud Mikkel Schubert Susanna Sawyer Ludovic Orlando

Methods Mol Biol 2019 ;1963:163-194

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark.

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September 2019

Author Correction: 137 ancient human genomes from across the Eurasian steppes.

Authors:
Peter de Barros Damgaard Nina Marchi Simon Rasmussen Michael Peyrot Gabriel Renaud Thorfinn Korneliussen J Victor Moreno-Mayar Mikkel Winther Pedersen Amy Goldberg Emma Usmanova Nurbol Baimukhanov Valeriy Loman Lotte Hedeager Anders Gorm Pedersen Kasper Nielsen Gennady Afanasiev Kunbolot Akmatov Almaz Aldashev Ashyk Alpaslan Gabit Baimbetov Vladimir I Bazaliiskii Arman Beisenov Bazartseren Boldbaatar Bazartseren Boldgiv Choduraa Dorzhu Sturla Ellingvag Diimaajav Erdenebaatar Rana Dajani Evgeniy Dmitriev Valeriy Evdokimov Karin M Frei Andrey Gromov Alexander Goryachev Hakon Hakonarson Tatyana Hegay Zaruhi Khachatryan Ruslan Khaskhanov Egor Kitov Alina Kolbina Tabaldiev Kubatbek Alexey Kukushkin Igor Kukushkin Nina Lau Ashot Margaryan Inga Merkyte Ilya V Mertz Viktor K Mertz Enkhbayar Mijiddorj Vyacheslav Moiyesev Gulmira Mukhtarova Bekmukhanbet Nurmukhanbetov Z Orozbekova Irina Panyushkina Karol Pieta Vaclav Smrčka Irina Shevnina Andrey Logvin Karl-Goran Sjogren Tereza Štolcova Angela M Taravella Kadicha Tashbaeva Alexander Tkachev Turaly Tulegenov Dmitriy Voyakin Levon Yepiskoposyan Sainbileg Undrakhbold Victor Varfolomeev Andrzej Weber Melissa A Wilson Sayres Nikolay Kradin Morten E Allentoft Ludovic Orlando Rasmus Nielsen Martin Sikora Evelyne Heyer Kristian Kristiansen Eske Willerslev

Nature 2018 11;563(7729):E16

Center for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.

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November 2018

137 ancient human genomes from across the Eurasian steppes.

Authors:
Peter de Barros Damgaard Nina Marchi Simon Rasmussen Michaël Peyrot Gabriel Renaud Thorfinn Korneliussen J Víctor Moreno-Mayar Mikkel Winther Pedersen Amy Goldberg Emma Usmanova Nurbol Baimukhanov Valeriy Loman Lotte Hedeager Anders Gorm Pedersen Kasper Nielsen Gennady Afanasiev Kunbolot Akmatov Almaz Aldashev Ashyk Alpaslan Gabit Baimbetov Vladimir I Bazaliiskii Arman Beisenov Bazartseren Boldbaatar Bazartseren Boldgiv Choduraa Dorzhu Sturla Ellingvag Diimaajav Erdenebaatar Rana Dajani Evgeniy Dmitriev Valeriy Evdokimov Karin M Frei Andrey Gromov Alexander Goryachev Hakon Hakonarson Tatyana Hegay Zaruhi Khachatryan Ruslan Khaskhanov Egor Kitov Alina Kolbina Tabaldiev Kubatbek Alexey Kukushkin Igor Kukushkin Nina Lau Ashot Margaryan Inga Merkyte Ilya V Mertz Viktor K Mertz Enkhbayar Mijiddorj Vyacheslav Moiyesev Gulmira Mukhtarova Bekmukhanbet Nurmukhanbetov Z Orozbekova Irina Panyushkina Karol Pieta Václav Smrčka Irina Shevnina Andrey Logvin Karl-Göran Sjögren Tereza Štolcová Angela M Taravella Kadicha Tashbaeva Alexander Tkachev Turaly Tulegenov Dmitriy Voyakin Levon Yepiskoposyan Sainbileg Undrakhbold Victor Varfolomeev Andrzej Weber Melissa A Wilson Sayres Nikolay Kradin Morten E Allentoft Ludovic Orlando Rasmus Nielsen Martin Sikora Evelyne Heyer Kristian Kristiansen Eske Willerslev

Nature 2018 05 9;557(7705):369-374. Epub 2018 May 9.

Center for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.

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May 2018

Improved de novo genomic assembly for the domestic donkey.

Authors:
Gabriel Renaud Bent Petersen Andaine Seguin-Orlando Mads Frost Bertelsen Andrew Waller Richard Newton Romain Paillot Neil Bryant Mark Vaudin Pablo Librado Ludovic Orlando

Sci Adv 2018 04 4;4(4):eaaq0392. Epub 2018 Apr 4.

Centre for GeoGenetics, Natural History Museum of Denmark, Øster Voldgade 5-7, 1350K Copenhagen, Denmark.

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April 2018

Origins and genetic legacies of the Caribbean Taino.

Authors:
Hannes Schroeder Martin Sikora Shyam Gopalakrishnan Lara M Cassidy Pierpaolo Maisano Delser Marcela Sandoval Velasco Joshua G Schraiber Simon Rasmussen Julian R Homburger María C Ávila-Arcos Morten E Allentoft J Víctor Moreno-Mayar Gabriel Renaud Alberto Gómez-Carballa Jason E Laffoon Rachel J A Hopkins Thomas F G Higham Robert S Carr William C Schaffer Jane S Day Menno Hoogland Antonio Salas Carlos D Bustamante Rasmus Nielsen Daniel G Bradley Corinne L Hofman Eske Willerslev

Proc Natl Acad Sci U S A 2018 03 20;115(10):2341-2346. Epub 2018 Feb 20.

Center for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark;

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March 2018

glactools: a command-line toolset for the management of genotype likelihoods and allele counts.

Authors:
Gabriel Renaud

Bioinformatics 2018 04;34(8):1398-1400

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany.

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April 2018

Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada.

Authors:
Ana T Duggan Alison J T Harris Stephanie Marciniak Ingeborg Marshall Melanie Kuch Andrew Kitchen Gabriel Renaud John Southon Ben Fuller Janet Young Stuart Fiedel G Brian Golding Vaughan Grimes Hendrik Poinar

Curr Biol 2017 Oct 12;27(20):3149-3156.e11. Epub 2017 Oct 12.

McMaster Ancient DNA Centre, Department of Anthropology, McMaster University, Hamilton, ON L8S 4L8, Canada; Michael G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, ON L8S 4L8, Canada; Humans & the Microbiome Program, Canadian Institute for Advanced Research, Toronto, ON M5G 1Z8, Canada. Electronic address:

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October 2017

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers.

Authors:
Martin Sikora Andaine Seguin-Orlando Vitor C Sousa Anders Albrechtsen Thorfinn Korneliussen Amy Ko Simon Rasmussen Isabelle Dupanloup Philip R Nigst Marjolein D Bosch Gabriel Renaud Morten E Allentoft Ashot Margaryan Sergey V Vasilyev Elizaveta V Veselovskaya Svetlana B Borutskaya Thibaut Deviese Dan Comeskey Tom Higham Andrea Manica Robert Foley David J Meltzer Rasmus Nielsen Laurent Excoffier Marta Mirazon Lahr Ludovic Orlando Eske Willerslev

Science 2017 11 5;358(6363):659-662. Epub 2017 Oct 5.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark.

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November 2017

A fourth Denisovan individual.

Authors:
Viviane Slon Bence Viola Gabriel Renaud Marie-Theres Gansauge Stefano Benazzi Susanna Sawyer Jean-Jacques Hublin Michael V Shunkov Anatoly P Derevianko Janet Kelso Kay Prüfer Matthias Meyer Svante Pääbo

Sci Adv 2017 07 7;3(7):e1700186. Epub 2017 Jul 7.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.

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July 2017

Correction: Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.

Authors:
Fernando Racimo Gabriel Renaud Montgomery Slatkin

PLoS Genet 2016 Nov 8;12(11):e1006444. Epub 2016 Nov 8.

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November 2016

gargammel: a sequence simulator for ancient DNA.

Authors:
Gabriel Renaud Kristian Hanghøj Eske Willerslev Ludovic Orlando

Bioinformatics 2017 02;33(4):577-579

Center for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark.

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February 2017

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Authors:
Swapan Mallick Heng Li Mark Lipson Iain Mathieson Melissa Gymrek Fernando Racimo Mengyao Zhao Niru Chennagiri Susanne Nordenfelt Arti Tandon Pontus Skoglund Iosif Lazaridis Sriram Sankararaman Qiaomei Fu Nadin Rohland Gabriel Renaud Yaniv Erlich Thomas Willems Carla Gallo Jeffrey P Spence Yun S Song Giovanni Poletti Francois Balloux George van Driem Peter de Knijff Irene Gallego Romero Aashish R Jha Doron M Behar Claudio M Bravi Cristian Capelli Tor Hervig Andres Moreno-Estrada Olga L Posukh Elena Balanovska Oleg Balanovsky Sena Karachanak-Yankova Hovhannes Sahakyan Draga Toncheva Levon Yepiskoposyan Chris Tyler-Smith Yali Xue M Syafiq Abdullah Andres Ruiz-Linares Cynthia M Beall Anna Di Rienzo Choongwon Jeong Elena B Starikovskaya Ene Metspalu Jüri Parik Richard Villems Brenna M Henn Ugur Hodoglugil Robert Mahley Antti Sajantila George Stamatoyannopoulos Joseph T S Wee Rita Khusainova Elza Khusnutdinova Sergey Litvinov George Ayodo David Comas Michael F Hammer Toomas Kivisild William Klitz Cheryl A Winkler Damian Labuda Michael Bamshad Lynn B Jorde Sarah A Tishkoff W Scott Watkins Mait Metspalu Stanislav Dryomov Rem Sukernik Lalji Singh Kumarasamy Thangaraj Svante Pääbo Janet Kelso Nick Patterson David Reich

Nature 2016 Oct 21;538(7624):201-206. Epub 2016 Sep 21.

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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October 2016

Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.

Authors:
Fernando Racimo Gabriel Renaud Montgomery Slatkin

PLoS Genet 2016 Apr 6;12(4):e1005972. Epub 2016 Apr 6.

Department of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America.

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April 2016

Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe.

Authors:
Cosimo Posth Gabriel Renaud Alissa Mittnik Dorothée G Drucker Hélène Rougier Christophe Cupillard Frédérique Valentin Corinne Thevenet Anja Furtwängler Christoph Wißing Michael Francken Maria Malina Michael Bolus Martina Lari Elena Gigli Giulia Capecchi Isabelle Crevecoeur Cédric Beauval Damien Flas Mietje Germonpré Johannes van der Plicht Richard Cottiaux Bernard Gély Annamaria Ronchitelli Kurt Wehrberger Dan Grigorescu Jiří Svoboda Patrick Semal David Caramelli Hervé Bocherens Katerina Harvati Nicholas J Conard Wolfgang Haak Adam Powell Johannes Krause

Curr Biol 2016 Mar 4;26(6):827-33. Epub 2016 Feb 4.

Institute for Archaeological Sciences, Archaeo- and Palaeogenetics, University of Tübingen, Rümelinstraße 23, 72070 Tübingen, Germany; Max Planck Institute for the Science of Human History, Kahlaische Straße 10, 07745 Jena, Germany; Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, 72072 Tübingen, Germany. Electronic address:

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March 2016