Fuli Yu

Fuli Yu

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Fuli Yu

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Clinical utility of noninvasive prenatal screening for expanded chromosome disease syndromes.

Genet Med 2019 09 4;21(9):1998-2006. Epub 2019 Mar 4.

Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, China.

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http://dx.doi.org/10.1038/s41436-019-0467-4DOI Listing
September 2019

Prospective chromosome analysis of 3429 amniocentesis samples in China using copy number variation sequencing.

Am J Obstet Gynecol 2018 09 29;219(3):287.e1-287.e18. Epub 2018 May 29.

Department of Obstetrics and Gynecology, West China Second University Hospital of Sichuan University and the Key Laboratory of Birth Defects and Related Diseases of Women and Children, Sichuan University, Ministry of Education, Chengdu, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00029378183044
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http://dx.doi.org/10.1016/j.ajog.2018.05.030DOI Listing
September 2018

Rho Guanine Nucleotide Exchange Factor Is a Risk Gene for Intracranial Aneurysms.

Circ Genom Precis Med 2018 07;11(7):e002099

Department of Neurosurgery, Tianjin Neurological Institute, Tianjin Medical University General Hospital, China (X.Y., Z.Z., Y.Z., M.L., L.H., R.J., S.Y., J.Z., F.Y.).

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http://dx.doi.org/10.1161/CIRCGEN.117.002099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6141028PMC
July 2018

Extremely low-coverage whole genome sequencing in South Asians captures population genomics information.

BMC Genomics 2017 05 22;18(1):396. Epub 2017 May 22.

Department of Genetics, Human Genetics Institute of New Jersey, Rutgers, The State University of New Jersey, Piscataway, NJ, 08854, USA.

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http://dx.doi.org/10.1186/s12864-017-3767-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440948PMC
May 2017

Practical Approaches for Whole-Genome Sequence Analysis of Heart- and Blood-Related Traits.

Am J Hum Genet 2017 02 12;100(2):205-215. Epub 2017 Jan 12.

Human Genetics Center, University of Texas School of Public Health, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address:

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http://www.cell.com/cms/attachment/2079092243/2071221521/mmc
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http://dx.doi.org/10.1016/j.ajhg.2016.12.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5294677PMC
February 2017

Self-forming TiBN Nanocomposite Multilayer Coating Prepared by Pulse Cathode Arc Method.

Nanoscale Res Lett 2016 Dec 27;11(1):349. Epub 2016 Jul 27.

Center for Precision Engineering, Harbin Institute of Technology, Harbin, 150001, People's Republic of China.

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http://dx.doi.org/10.1186/s11671-016-1564-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961656PMC
December 2016

Base-Biased Evolution of Disease-Associated Mutations in the Human Genome.

Hum Mutat 2016 11 31;37(11):1209-1214. Epub 2016 Aug 31.

Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.

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http://dx.doi.org/10.1002/humu.23065DOI Listing
November 2016

A hybrid computational strategy to address WGS variant analysis in >5000 samples.

BMC Bioinformatics 2016 Sep 10;17(1):361. Epub 2016 Sep 10.

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.

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http://dx.doi.org/10.1186/s12859-016-1211-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018196PMC
September 2016

Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions.

PLoS One 2015 25;10(3):e0121644. Epub 2015 Mar 25.

Human Genome Sequencing Center, Molecular and Human Genetics Department, Baylor College of Medicine, Houston, Texas, United States of America; Human Genetic Center, University of Texas Health Science Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0121644PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373932PMC
March 2016

Multiallelic Positions in the Human Genome: Challenges for Genetic Analyses.

Hum Mutat 2016 Mar 31;37(3):231-234. Epub 2015 Dec 31.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1002/humu.22944DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752396PMC
March 2016

An integrated map of structural variation in 2,504 human genomes.

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature15394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617611PMC
October 2015

Possible race and gender divergence in association of genetic variations with plasma von Willebrand factor: a study of ARIC and 1000 genome cohorts.

PLoS One 2014 17;9(1):e84810. Epub 2014 Jan 17.

Puget Sound Blood Research Institute, Puget Sound Blood Center, Seattle, Washington, United States of America ; Division of Hematology, Department of Medicine, University of Washington School of Medicine, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0084810PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894939PMC
September 2014

Template-assisted nanostructure fabrication by glancing angle deposition: a molecular dynamics study.

Nanoscale Res Lett 2013 Jul 5;8(1):312. Epub 2013 Jul 5.

Center for Precision Engineering, Harbin Institute of Technology, Harbin 150001, People's Republic of China.

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http://dx.doi.org/10.1186/1556-276X-8-312DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3733689PMC
July 2013

The 1000 Genomes Project: paving the way for personalized genomic medicine.

Per Med 2013 Jun;10(4):321-324

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA and Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.2217/pme.13.22DOI Listing
June 2013

An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data.

Genome Res 2013 May 7;23(5):833-42. Epub 2013 Jan 7.

Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1101/gr.146084.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638139PMC
May 2013

Translational signatures and mRNA levels are highly correlated in human stably expressed genes.

BMC Genomics 2013 Apr 19;14:268. Epub 2013 Apr 19.

Piracicaba Dental School, University of Campinas, PO Box 52, Piracicaba, SP, 13414-903, Brazil.

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http://dx.doi.org/10.1186/1471-2164-14-268DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3639913PMC
April 2013

Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes.

BMC Med Genomics 2012 Feb 21;5. Epub 2012 Feb 21.

Angelo Bianchi Bonomi Hemophilia and Thrombosis Center, U.O.S. Dipartimentale per la Diagnosi e la Terapia delle Coagulopatie, Fondazione IRCCS Cà Granda - Ospedale Maggiore Policlinico, Università degli Studi di Milano, Milan, Italy.

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http://dx.doi.org/10.1186/1755-8794-5-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3305575PMC
February 2012

Characterizing linkage disequilibrium and evaluating imputation power of human genomic insertion-deletion polymorphisms.

Genome Biol 2012 Feb 29;13(2):R15. Epub 2012 Feb 29.

Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1186/gb-2012-13-2-r15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334570PMC
February 2012

Next-generation sequencing.

J Biomed Biotechnol 2010 29;2010:370710. Epub 2011 Mar 29.

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http://dx.doi.org/10.1155/2010/370710DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3075819PMC
August 2011

Demographic history and rare allele sharing among human populations.

Proc Natl Acad Sci U S A 2011 Jul 5;108(29):11983-8. Epub 2011 Jul 5.

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120, USA.

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http://dx.doi.org/10.1073/pnas.1019276108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142009PMC
July 2011

Genetic diversity in India and the inference of Eurasian population expansion.

Genome Biol 2010 24;11(11):R113. Epub 2010 Nov 24.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, 15 North 2030 East, Salt Lake City, UT 84112, USA.

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http://jorde-lab.genetics.utah.edu/pub/Xing_ENCODE/Supplemen
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http://genomebiology.com/2010/11/11/R113
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http://dx.doi.org/10.1186/gb-2010-11-11-r113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156952PMC
June 2011

Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing.

BMC Bioinformatics 2010 Nov 23;11:572. Epub 2010 Nov 23.

Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza Houston, TX 77030, USA.

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http://dx.doi.org/10.1186/1471-2105-11-572DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001746PMC
November 2010

Integrating common and rare genetic variation in diverse human populations.

Nature 2010 Sep;467(7311):52-8

Broad Institute, 7 Cambridge Center, Cambridge, Massachusetts 02138, USA.

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http://dx.doi.org/10.1038/nature09298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3173859PMC
September 2010

Detecting natural selection by empirical comparison to random regions of the genome.

Hum Mol Genet 2009 Dec 25;18(24):4853-67. Epub 2009 Sep 25.

Department of Genetics, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1093/hmg/ddp457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2778377PMC
December 2009

A second generation human haplotype map of over 3.1 million SNPs.

Authors:
Kelly A Frazer Dennis G Ballinger David R Cox David A Hinds Laura L Stuve Richard A Gibbs John W Belmont Andrew Boudreau Paul Hardenbol Suzanne M Leal Shiran Pasternak David A Wheeler Thomas D Willis Fuli Yu Huanming Yang Changqing Zeng Yang Gao Haoran Hu Weitao Hu Chaohua Li Wei Lin Siqi Liu Hao Pan Xiaoli Tang Jian Wang Wei Wang Jun Yu Bo Zhang Qingrun Zhang Hongbin Zhao Hui Zhao Jun Zhou Stacey B Gabriel Rachel Barry Brendan Blumenstiel Amy Camargo Matthew Defelice Maura Faggart Mary Goyette Supriya Gupta Jamie Moore Huy Nguyen Robert C Onofrio Melissa Parkin Jessica Roy Erich Stahl Ellen Winchester Liuda Ziaugra David Altshuler Yan Shen Zhijian Yao Wei Huang Xun Chu Yungang He Li Jin Yangfan Liu Yayun Shen Weiwei Sun Haifeng Wang Yi Wang Ying Wang Xiaoyan Xiong Liang Xu Mary M Y Waye Stephen K W Tsui Hong Xue J Tze-Fei Wong Luana M Galver Jian-Bing Fan Kevin Gunderson Sarah S Murray Arnold R Oliphant Mark S Chee Alexandre Montpetit Fanny Chagnon Vincent Ferretti Martin Leboeuf Jean-François Olivier Michael S Phillips Stéphanie Roumy Clémentine Sallée Andrei Verner Thomas J Hudson Pui-Yan Kwok Dongmei Cai Daniel C Koboldt Raymond D Miller Ludmila Pawlikowska Patricia Taillon-Miller Ming Xiao Lap-Chee Tsui William Mak You Qiang Song Paul K H Tam Yusuke Nakamura Takahisa Kawaguchi Takuya Kitamoto Takashi Morizono Atsushi Nagashima Yozo Ohnishi Akihiro Sekine Toshihiro Tanaka Tatsuhiko Tsunoda Panos Deloukas Christine P Bird Marcos Delgado Emmanouil T Dermitzakis Rhian Gwilliam Sarah Hunt Jonathan Morrison Don Powell Barbara E Stranger Pamela Whittaker David R Bentley Mark J Daly Paul I W de Bakker Jeff Barrett Yves R Chretien Julian Maller Steve McCarroll Nick Patterson Itsik Pe'er Alkes Price Shaun Purcell Daniel J Richter Pardis Sabeti Richa Saxena Stephen F Schaffner Pak C Sham Patrick Varilly David Altshuler Lincoln D Stein Lalitha Krishnan Albert Vernon Smith Marcela K Tello-Ruiz Gudmundur A Thorisson Aravinda Chakravarti Peter E Chen David J Cutler Carl S Kashuk Shin Lin Gonçalo R Abecasis Weihua Guan Yun Li Heather M Munro Zhaohui Steve Qin Daryl J Thomas Gilean McVean Adam Auton Leonardo Bottolo Niall Cardin Susana Eyheramendy Colin Freeman Jonathan Marchini Simon Myers Chris Spencer Matthew Stephens Peter Donnelly Lon R Cardon Geraldine Clarke David M Evans Andrew P Morris Bruce S Weir Tatsuhiko Tsunoda James C Mullikin Stephen T Sherry Michael Feolo Andrew Skol Houcan Zhang Changqing Zeng Hui Zhao Ichiro Matsuda Yoshimitsu Fukushima Darryl R Macer Eiko Suda Charles N Rotimi Clement A Adebamowo Ike Ajayi Toyin Aniagwu Patricia A Marshall Chibuzor Nkwodimmah Charmaine D M Royal Mark F Leppert Missy Dixon Andy Peiffer Renzong Qiu Alastair Kent Kazuto Kato Norio Niikawa Isaac F Adewole Bartha M Knoppers Morris W Foster Ellen Wright Clayton Jessica Watkin Richard A Gibbs John W Belmont Donna Muzny Lynne Nazareth Erica Sodergren George M Weinstock David A Wheeler Imtaz Yakub Stacey B Gabriel Robert C Onofrio Daniel J Richter Liuda Ziaugra Bruce W Birren Mark J Daly David Altshuler Richard K Wilson Lucinda L Fulton Jane Rogers John Burton Nigel P Carter Christopher M Clee Mark Griffiths Matthew C Jones Kirsten McLay Robert W Plumb Mark T Ross Sarah K Sims David L Willey Zhu Chen Hua Han Le Kang Martin Godbout John C Wallenburg Paul L'Archevêque Guy Bellemare Koji Saeki Hongguang Wang Daochang An Hongbo Fu Qing Li Zhen Wang Renwu Wang Arthur L Holden Lisa D Brooks Jean E McEwen Mark S Guyer Vivian Ota Wang Jane L Peterson Michael Shi Jack Spiegel Lawrence M Sung Lynn F Zacharia Francis S Collins Karen Kennedy Ruth Jamieson John Stewart

Nature 2007 Oct;449(7164):851-61

The Scripps Research Institute, 10550 North Torrey Pines Road MEM275, La Jolla, California 92037, USA.

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https://www.genome.gov/Pages/Newsroom/CurrentNewsReleases/In
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http://www.nature.com/doifinder/10.1038/nature06258
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http://dx.doi.org/10.1038/nature06258DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689609PMC
October 2007

Genome-wide detection and characterization of positive selection in human populations.

Authors:
Pardis C Sabeti Patrick Varilly Ben Fry Jason Lohmueller Elizabeth Hostetter Chris Cotsapas Xiaohui Xie Elizabeth H Byrne Steven A McCarroll Rachelle Gaudet Stephen F Schaffner Eric S Lander Kelly A Frazer Dennis G Ballinger David R Cox David A Hinds Laura L Stuve Richard A Gibbs John W Belmont Andrew Boudreau Paul Hardenbol Suzanne M Leal Shiran Pasternak David A Wheeler Thomas D Willis Fuli Yu Huanming Yang Changqing Zeng Yang Gao Haoran Hu Weitao Hu Chaohua Li Wei Lin Siqi Liu Hao Pan Xiaoli Tang Jian Wang Wei Wang Jun Yu Bo Zhang Qingrun Zhang Hongbin Zhao Hui Zhao Jun Zhou Stacey B Gabriel Rachel Barry Brendan Blumenstiel Amy Camargo Matthew Defelice Maura Faggart Mary Goyette Supriya Gupta Jamie Moore Huy Nguyen Robert C Onofrio Melissa Parkin Jessica Roy Erich Stahl Ellen Winchester Liuda Ziaugra David Altshuler Yan Shen Zhijian Yao Wei Huang Xun Chu Yungang He Li Jin Yangfan Liu Yayun Shen Weiwei Sun Haifeng Wang Yi Wang Ying Wang Xiaoyan Xiong Liang Xu Mary M Y Waye Stephen K W Tsui Hong Xue J Tze-Fei Wong Luana M Galver Jian-Bing Fan Kevin Gunderson Sarah S Murray Arnold R Oliphant Mark S Chee Alexandre Montpetit Fanny Chagnon Vincent Ferretti Martin Leboeuf Jean-François Olivier Michael S Phillips Stéphanie Roumy Clémentine Sallée Andrei Verner Thomas J Hudson Pui-Yan Kwok Dongmei Cai Daniel C Koboldt Raymond D Miller Ludmila Pawlikowska Patricia Taillon-Miller Ming Xiao Lap-Chee Tsui William Mak You Qiang Song Paul K H Tam Yusuke Nakamura Takahisa Kawaguchi Takuya Kitamoto Takashi Morizono Atsushi Nagashima Yozo Ohnishi Akihiro Sekine Toshihiro Tanaka Tatsuhiko Tsunoda Panos Deloukas Christine P Bird Marcos Delgado Emmanouil T Dermitzakis Rhian Gwilliam Sarah Hunt Jonathan Morrison Don Powell Barbara E Stranger Pamela Whittaker David R Bentley Mark J Daly Paul I W de Bakker Jeff Barrett Yves R Chretien Julian Maller Steve McCarroll Nick Patterson Itsik Pe'er Alkes Price Shaun Purcell Daniel J Richter Pardis Sabeti Richa Saxena Stephen F Schaffner Pak C Sham Patrick Varilly David Altshuler Lincoln D Stein Lalitha Krishnan Albert Vernon Smith Marcela K Tello-Ruiz Gudmundur A Thorisson Aravinda Chakravarti Peter E Chen David J Cutler Carl S Kashuk Shin Lin Gonçalo R Abecasis Weihua Guan Yun Li Heather M Munro Zhaohui Steve Qin Daryl J Thomas Gilean McVean Adam Auton Leonardo Bottolo Niall Cardin Susana Eyheramendy Colin Freeman Jonathan Marchini Simon Myers Chris Spencer Matthew Stephens Peter Donnelly Lon R Cardon Geraldine Clarke David M Evans Andrew P Morris Bruce S Weir Tatsuhiko Tsunoda Todd A Johnson James C Mullikin Stephen T Sherry Michael Feolo Andrew Skol Houcan Zhang Changqing Zeng Hui Zhao Ichiro Matsuda Yoshimitsu Fukushima Darryl R Macer Eiko Suda Charles N Rotimi Clement A Adebamowo Ike Ajayi Toyin Aniagwu Patricia A Marshall Chibuzor Nkwodimmah Charmaine D M Royal Mark F Leppert Missy Dixon Andy Peiffer Renzong Qiu Alastair Kent Kazuto Kato Norio Niikawa Isaac F Adewole Bartha M Knoppers Morris W Foster Ellen Wright Clayton Jessica Watkin Richard A Gibbs John W Belmont Donna Muzny Lynne Nazareth Erica Sodergren George M Weinstock David A Wheeler Imtaz Yakub Stacey B Gabriel Robert C Onofrio Daniel J Richter Liuda Ziaugra Bruce W Birren Mark J Daly David Altshuler Richard K Wilson Lucinda L Fulton Jane Rogers John Burton Nigel P Carter Christopher M Clee Mark Griffiths Matthew C Jones Kirsten McLay Robert W Plumb Mark T Ross Sarah K Sims David L Willey Zhu Chen Hua Han Le Kang Martin Godbout John C Wallenburg Paul L'Archevêque Guy Bellemare Koji Saeki Hongguang Wang Daochang An Hongbo Fu Qing Li Zhen Wang Renwu Wang Arthur L Holden Lisa D Brooks Jean E McEwen Mark S Guyer Vivian Ota Wang Jane L Peterson Michael Shi Jack Spiegel Lawrence M Sung Lynn F Zacharia Francis S Collins Karen Kennedy Ruth Jamieson John Stewart

Nature 2007 Oct;449(7164):913-8

Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02139, USA.

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https://www.genome.gov/Pages/Newsroom/CurrentNewsReleases/Le
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http://www.nature.com/doifinder/10.1038/nature06250
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http://dx.doi.org/10.1038/nature06250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721PMC
October 2007

Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens".

Science 2007 Apr;316(5823):370

Department of Genetics, Harvard Medical School, New Research Building, 77 Avenue Louis Pasteur, Boston, MA 02115, USA.

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http://dx.doi.org/10.1126/science.1137568DOI Listing
April 2007