Fredrik Vannberg

Fredrik Vannberg

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Fredrik Vannberg

Fredrik Vannberg

Publications by authors named "Fredrik Vannberg"

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39Publications

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Ribose-Map: a bioinformatics toolkit to map ribonucleotides embedded in genomic DNA.

Nucleic Acids Res 2019 01;47(1):e5

School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332-0230, USA.

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http://dx.doi.org/10.1093/nar/gky874DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6326787PMC
January 2019

Machine learning predicts individual cancer patient responses to therapeutic drugs with high accuracy.

Sci Rep 2018 11 6;8(1):16444. Epub 2018 Nov 6.

School of Biological Sciences and Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, 315 Ferst Drive, Atlanta, GA, 30332, USA.

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http://www.nature.com/articles/s41598-018-34753-5
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http://dx.doi.org/10.1038/s41598-018-34753-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6219522PMC
November 2018

Mapping-free variant calling using haplotype reconstruction from k-mer frequencies.

Bioinformatics 2018 05;34(10):1659-1665

School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx753DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5946877PMC
May 2018

Next-Generation Sequencing and Bioinformatics Protocol for Malaria Drug Resistance Marker Surveillance.

Antimicrob Agents Chemother 2018 04 27;62(4). Epub 2018 Mar 27.

Malaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

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http://dx.doi.org/10.1128/AAC.02474-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5913988PMC
April 2018

Open source machine-learning algorithms for the prediction of optimal cancer drug therapies.

PLoS One 2017 26;12(10):e0186906. Epub 2017 Oct 26.

School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0186906PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5658085PMC
December 2017

First Full Draft Genome Sequence of .

Genome Announc 2017 Feb 9;5(6). Epub 2017 Feb 9.

Malaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

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http://genomea.asm.org/lookup/doi/10.1128/genomeA.01566-16
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http://dx.doi.org/10.1128/genomeA.01566-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5331498PMC
February 2017

Chocó, Colombia: a hotspot of human biodiversity.

Rev Biodivers Neotrop 2016 Jan-Jun;6(1):45-54

PanAmerican Bioinformatics Institute, Cali, Valle del Cauca, Colombia; School of Biology, Georgia Institute of Technology, Atlanta, Georgia, USA; BIOS Centro de Bioinformática y Biología Computacional, Manizales, Caldas, Colombia.

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http://dx.doi.org/10.18636/bioneotropical.v6i1.341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033504PMC
September 2016

Advanced Molecular Detection of Malarone Resistance.

Antimicrob Agents Chemother 2016 06 23;60(6):3821-3. Epub 2016 May 23.

Malaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

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http://dx.doi.org/10.1128/AAC.00171-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4879379PMC
June 2016

Lymphatic transport of exosomes as a rapid route of information dissemination to the lymph node.

Sci Rep 2016 Apr 18;6:24436. Epub 2016 Apr 18.

Parker H. Petit Institute for Bioengineering and Bioscience Georgia Institute of Technology, Atlanta, GA, USA.

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http://dx.doi.org/10.1038/srep24436DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4834495PMC
April 2016

Ligation of RNA Oligomers by the Schistosoma mansoni Hammerhead Ribozyme in Frozen Solution.

J Mol Evol 2016 Mar 20;82(2-3):81-92. Epub 2016 Feb 20.

School of Biology, Georgia Institute of Technology, Atlanta, GA, 30332, USA.

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http://dx.doi.org/10.1007/s00239-016-9729-9DOI Listing
March 2016

KAnalyze: a fast versatile pipelined k-mer toolkit.

Bioinformatics 2014 Jul 18;30(14):2070-2. Epub 2014 Mar 18.

School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4080738PMC
July 2014

Effect of HIV-2 infection on HIV-1 disease progression.

N Engl J Med 2012 11;367(20):1962; author reply 1962-3

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http://dx.doi.org/10.1056/NEJMc1210334DOI Listing
November 2012

A common haplotype of the TNF receptor 2 gene modulates endotoxin tolerance.

J Immunol 2011 Mar 31;186(5):3058-65. Epub 2011 Jan 31.

Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, United Kingdom.

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http://dx.doi.org/10.4049/jimmunol.1001791DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3211060PMC
March 2011

Human genetic susceptibility to intracellular pathogens.

Immunol Rev 2011 Mar;240(1):105-16

Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1111/j.1600-065X.2010.00996.xDOI Listing
March 2011

Genomewide association study of leprosy.

N Engl J Med 2010 Apr;362(15):1446-7; author reply 1447-8

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http://dx.doi.org/10.1056/NEJMc1001451DOI Listing
April 2010

Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants.

Authors:
Paul R Burton David G Clayton Lon R Cardon Nick Craddock Panos Deloukas Audrey Duncanson Dominic P Kwiatkowski Mark I McCarthy Willem H Ouwehand Nilesh J Samani John A Todd Peter Donnelly Jeffrey C Barrett Dan Davison Doug Easton David M Evans Hin-Tak Leung Jonathan L Marchini Andrew P Morris Chris C A Spencer Martin D Tobin Antony P Attwood James P Boorman Barbara Cant Ursula Everson Judith M Hussey Jennifer D Jolley Alexandra S Knight Kerstin Koch Elizabeth Meech Sarah Nutland Christopher V Prowse Helen E Stevens Niall C Taylor Graham R Walters Neil M Walker Nicholas A Watkins Thilo Winzer Richard W Jones Wendy L McArdle Susan M Ring David P Strachan Marcus Pembrey Gerome Breen David St Clair Sian Caesar Katharine Gordon-Smith Lisa Jones Christine Fraser Elaine K Green Detelina Grozeva Marian L Hamshere Peter A Holmans Ian R Jones George Kirov Valentina Moskivina Ivan Nikolov Michael C O'Donovan Michael J Owen David A Collier Amanda Elkin Anne Farmer Richard Williamson Peter McGuffin Allan H Young I Nicol Ferrier Stephen G Ball Anthony J Balmforth Jennifer H Barrett Timothy D Bishop Mark M Iles Azhar Maqbool Nadira Yuldasheva Alistair S Hall Peter S Braund Richard J Dixon Massimo Mangino Suzanne Stevens John R Thompson Francesca Bredin Mark Tremelling Miles Parkes Hazel Drummond Charles W Lees Elaine R Nimmo Jack Satsangi Sheila A Fisher Alastair Forbes Cathryn M Lewis Clive M Onnie Natalie J Prescott Jeremy Sanderson Christopher G Matthew Jamie Barbour M Khalid Mohiuddin Catherine E Todhunter John C Mansfield Tariq Ahmad Fraser R Cummings Derek P Jewell John Webster Morris J Brown Mark G Lathrop John Connell Anna Dominiczak Carolina A Braga Marcano Beverley Burke Richard Dobson Johannie Gungadoo Kate L Lee Patricia B Munroe Stephen J Newhouse Abiodun Onipinla Chris Wallace Mingzhan Xue Mark Caulfield Martin Farrall Anne Barton Ian N Bruce Hannah Donovan Steve Eyre Paul D Gilbert Samantha L Hilder Anne M Hinks Sally L John Catherine Potter Alan J Silman Deborah P M Symmons Wendy Thomson Jane Worthington David B Dunger Barry Widmer Timothy M Frayling Rachel M Freathy Hana Lango John R B Perry Beverley M Shields Michael N Weedon Andrew T Hattersley Graham A Hitman Mark Walker Kate S Elliott Christopher J Groves Cecilia M Lindgren Nigel W Rayner Nicolas J Timpson Eleftheria Zeggini Melanie Newport Giorgio Sirugo Emily Lyons Fredrik Vannberg Adrian V S Hill Linda A Bradbury Claire Farrar Jennifer J Pointon Paul Wordsworth Matthew A Brown Jayne A Franklyn Joanne M Heward Matthew J Simmonds Stephen C L Gough Sheila Seal Michael R Stratton Nazneen Rahman Maria Ban An Goris Stephen J Sawcer Alastair Compston David Conway Muminatou Jallow Melanie Newport Giorgio Sirugo Kirk A Rockett Suzannah J Bumpstead Amy Chaney Kate Downes Mohammed J R Ghori Rhian Gwilliam Sarah E Hunt Michael Inouye Andrew Keniry Emma King Ralph McGinnis Simon Potter Rathi Ravindrarajah Pamela Whittaker Claire Widden David Withers Niall J Cardin Dan Davison Teresa Ferreira Joanne Pereira-Gale Ingeleif B Hallgrimsdo'ttir Bryan N Howie Zhan Su Yik Ying Teo Damjan Vukcevic David Bentley Matthew A Brown Alastair Compston Martin Farrall Alistair S Hall Andrew T Hattersley Adrian V S Hill Miles Parkes Marcus Pembrey Michael R Stratton Sarah L Mitchell Paul R Newby Oliver J Brand Jackie Carr-Smith Simon H S Pearce R McGinnis A Keniry P Deloukas John D Reveille Xiaodong Zhou Anne-Marie Sims Alison Dowling Jacqueline Taylor Tracy Doan John C Davis Laurie Savage Michael M Ward Thomas L Learch Michael H Weisman Mathew Brown

Nat Genet 2007 Nov 21;39(11):1329-37. Epub 2007 Oct 21.

Genetic Epidemiology Group, Department of Health Sciences, University of Leicester, Adrian Building, University Road, Leicester LE1 7RH, UK.

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http://dx.doi.org/10.1038/ng.2007.17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680141PMC
November 2007

IkappaB genetic polymorphisms and invasive pneumococcal disease.

Am J Respir Crit Care Med 2007 Jul 26;176(2):181-7. Epub 2007 Apr 26.

The Wellcome Trust Centre for Human Genetics, University of Oxford, and Oxford Centre for Respiratory Medicine, Churchill Hospital Site, Oxford Radcliffe Hospital, Roosevelt Drive, Oxford, OX3 7BN, UK.

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http://dx.doi.org/10.1164/rccm.200702-169OCDOI Listing
July 2007

Functional polymorphisms in the FCN2 gene are not associated with invasive pneumococcal disease.

Mol Immunol 2007 May 26;44(12):3267-70. Epub 2007 Mar 26.

The Wellcome Trust Centre for Human Genetics, University of Oxford, UK.

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http://dx.doi.org/10.1016/j.molimm.2006.04.013DOI Listing
May 2007

Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation.

Proc Natl Acad Sci U S A 2005 Jun 31;102(23):8114-9. Epub 2005 May 31.

Harvard Institute of Proteomics, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 320 Charles Street, Cambridge, MA 02141, USA.

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http://dx.doi.org/10.1073/pnas.0503141102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1149441PMC
June 2005