Fredrik Ponten

Fredrik Ponten

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Fredrik Ponten

Fredrik Ponten

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Molecular characterization of a large unselected cohort of metastatic colorectal cancers in relation to primary tumor location, rare metastatic sites and prognosis.

Authors:
Luís Nunes Kristine Aasebø Lucy Mathot Viktor Ljungström Per-Henrik Edqvist Magnus Sundström Anca Dragomir Per Pfeiffer Adam Ameur Fredrik Ponten Artur Mezheyeuski Halfdan Sorbye Tobias Sjöblom Bengt Glimelius

Acta Oncol 2020 Jan 10:1-10. Epub 2020 Jan 10.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1080/0284186X.2019.1711169DOI Listing
January 2020

A genome-wide transcriptomic analysis of protein-coding genes in human blood cells.

Authors:
Mathias Uhlen Max J Karlsson Wen Zhong Abdellah Tebani Christian Pou Jaromir Mikes Tadepally Lakshmikanth Björn Forsström Fredrik Edfors Jacob Odeberg Adil Mardinoglu Cheng Zhang Kalle von Feilitzen Jan Mulder Evelina Sjöstedt Andreas Hober Per Oksvold Martin Zwahlen Fredrik Ponten Cecilia Lindskog Åsa Sivertsson Linn Fagerberg Petter Brodin

Science 2019 12;366(6472)

Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.1126/science.aax9198DOI Listing
December 2019

Metastatic colorectal carcinomas with high SATB2 expression are associated with better prognosis and response to chemotherapy: a population-based Scandinavian study.

Authors:
Artur Mezheyeuski Fredrik Ponten Per-Henrik Edqvist Magnus Sundström Ulf Thunberg Camilla Qvortrup Per Pfeiffer Halfdan Sorbye Bengt Glimelius Anca Dragomir

Acta Oncol 2019 Nov 26:1-7. Epub 2019 Nov 26.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1080/0284186X.2019.1691258DOI Listing
November 2019

The human secretome.

Authors:
Mathias Uhlén Max J Karlsson Andreas Hober Anne-Sophie Svensson Julia Scheffel David Kotol Wen Zhong Abdellah Tebani Linnéa Strandberg Fredrik Edfors Evelina Sjöstedt Jan Mulder Adil Mardinoglu Anna Berling Siri Ekblad Melanie Dannemeyer Sara Kanje Johan Rockberg Magnus Lundqvist Magdalena Malm Anna-Luisa Volk Peter Nilsson Anna Månberg Tea Dodig-Crnkovic Elisa Pin Martin Zwahlen Per Oksvold Kalle von Feilitzen Ragna S Häussler Mun-Gwan Hong Cecilia Lindskog Fredrik Ponten Borbala Katona Jimmy Vuu Emil Lindström Jens Nielsen Jonathan Robinson Burcu Ayoglu Diana Mahdessian Devin Sullivan Peter Thul Frida Danielsson Charlotte Stadler Emma Lundberg Göran Bergström Anders Gummesson Bjørn G Voldborg Hanna Tegel Sophia Hober Björn Forsström Jochen M Schwenk Linn Fagerberg Åsa Sivertsson

Sci Signal 2019 Nov 26;12(609). Epub 2019 Nov 26.

Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, Stockholm, Sweden.

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http://dx.doi.org/10.1126/scisignal.aaz0274DOI Listing
November 2019

LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer.

Authors:
Cristina Cadenas Sonja Vosbeck Karolina Edlund Katharina Grgas Katrin Madjar Birte Hellwig Alshaimaa Adawy Annika Glotzbach Joanna D Stewart Michaela S Lesjak Dennis Franckenstein Maren Claus Heiko Hayen Alexander Schriewer Kathrin Gianmoena Sonja Thaler Marcus Schmidt Patrick Micke Fredrik Pontén Adil Mardinoglu Cheng Zhang Heiko U Käfferlein Carsten Watzl Saša Frank Jörg Rahnenführer Rosemarie Marchan Jan G Hengstler

Int J Cancer 2019 08 7;145(4):901-915. Epub 2019 Feb 7.

Department of Toxicology, Leibniz-Research Centre for Working Environment and Human Factors at the TU Dortmund (IfADo), Dortmund, Germany.

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http://doi.wiley.com/10.1002/ijc.32138
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http://dx.doi.org/10.1002/ijc.32138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6618071PMC
August 2019

Stroma-normalised vessel density predicts benefit from adjuvant fluorouracil-based chemotherapy in patients with stage II/III colon cancer.

Authors:
Artur Mezheyeuski Ina Hrynchyk Mercedes Herrera Mia Karlberg Eric Osterman Peter Ragnhammar David Edler Anna Portyanko Fredrik Ponten Tobias Sjöblom Bengt Glimelius Arne Östman

Br J Cancer 2019 Aug 10;121(4):303-311. Epub 2019 Jul 10.

Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.

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http://www.nature.com/articles/s41416-019-0519-1
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http://dx.doi.org/10.1038/s41416-019-0519-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6738077PMC
August 2019

Consequences of a high incidence of microsatellite instability and BRAF-mutated tumors: A population-based cohort of metastatic colorectal cancer patients.

Authors:
Kristine Ø Aasebø Anca Dragomir Magnus Sundström Artur Mezheyeuski Per-Henrik Edqvist Geir Egil Eide Fredrik Ponten Per Pfeiffer Bengt Glimelius Halfdan Sorbye

Cancer Med 2019 Jul 9;8(7):3623-3635. Epub 2019 May 9.

Department of Clinical Science, University of Bergen, Bergen, Norway.

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http://dx.doi.org/10.1002/cam4.2205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6601706PMC
July 2019

Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles.

Authors:
Claudia Fredolini Sanna Byström Laura Sanchez-Rivera Marina Ioannou Davide Tamburro Fredrik Pontén Rui M Branca Peter Nilsson Janne Lehtiö Jochen M Schwenk

Sci Rep 2019 Jun 6;9(1):8324. Epub 2019 Jun 6.

Division of Affinity Proteomics, Science for Life Laboratory, Department of Protein Science, KTH - Royal Institute of Technology, 171 21, Solna, Sweden.

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http://dx.doi.org/10.1038/s41598-019-43552-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6554399PMC
June 2019

Tumoral Pyruvate Kinase L/R as a Predictive Marker for the Treatment of Renal Cancer Patients with Sunitinib and Sorafenib.

Authors:
Marjut Niinivirta Gunilla Enblad Cecilia Lindskog Fredrik Pontén Anca Dragomir Gustav J Ullenhag

J Cancer 2019 2;10(14):3224-3231. Epub 2019 Jun 2.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.7150/jca.30130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6603390PMC
June 2019

Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC.

Authors:
Karolina Edlund Katrin Madjar Johanna S M Mattsson Dijana Djureinovic Cecilia Lindskog Hans Brunnström Hirsh Koyi Eva Brandén Karin Jirström Fredrik Pontén Jörg Rahnenführer Patrick Micke Jan G Hengstler

J Thorac Oncol 2019 04 9;14(4):628-640. Epub 2019 Jan 9.

Leibniz Research Centre for Working Environment and Human Factors (IfADo) at TU Dortmund University, Dortmund, Germany.

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http://dx.doi.org/10.1016/j.jtho.2018.12.022DOI Listing
April 2019

Detection of autoantibodies against cancer-testis antigens in non-small cell lung cancer.

Authors:
Dijana Djureinovic Tea Dodig-Crnković Cecilia Hellström Georg Holgersson Michael Bergqvist Johanna S M Mattsson Fredrik Pontén Elisabeth Ståhle Jochen M Schwenk Patrick Micke

Lung Cancer 2018 11 17;125:157-163. Epub 2018 Sep 17.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01695002183057
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http://dx.doi.org/10.1016/j.lungcan.2018.09.012DOI Listing
November 2018

Immunohistochemistry for transcription factor T-Pit as a tool in diagnostics of corticotroph pituitary tumours.

Authors:
Olivera Casar-Borota Jens Bollerslev Fredrik Pontén

Pituitary 2018 08;21(4):443

Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1007/s11102-018-0879-1DOI Listing
August 2018

Novel Multiomics Profiling of Human Carotid Atherosclerotic Plaques and Plasma Reveals Biliverdin Reductase B as a Marker of Intraplaque Hemorrhage.

Authors:
Ljubica Perisic Matic Maria Jesus Iglesias Mattias Vesterlund Mariette Lengquist Mun-Gwan Hong Shanga Saieed Laura Sanchez-Rivera Martin Berg Anton Razuvaev Malin Kronqvist Kent Lund Kenneth Caidahl Peter Gillgren Fredrik Pontén Mathias Uhlén Jochen M Schwenk Göran K Hansson Gabrielle Paulsson-Berne Erika Fagman Joy Roy Rebecka Hultgren Göran Bergström Janne Lehtiö Jacob Odeberg Ulf Hedin

JACC Basic Transl Sci 2018 Aug 1;3(4):464-480. Epub 2018 Aug 1.

Department of Molecular Medicine and Surgery, Karolinska Institute, Stockholm, Sweden.

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https://linkinghub.elsevier.com/retrieve/pii/S2452302X183009
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http://dx.doi.org/10.1016/j.jacbts.2018.04.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6115646PMC
August 2018

Mining the Human Tissue Proteome for Protein Citrullination.

Authors:
Chien-Yun Lee Dongxue Wang Mathias Wilhelm Daniel P Zolg Tobias Schmidt Karsten Schnatbaum Ulf Reimer Fredrik Pontén Mathias Uhlén Hannes Hahne Bernhard Kuster

Mol Cell Proteomics 2018 07 2;17(7):1378-1391. Epub 2018 Apr 2.

From the ‡Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany;

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http://dx.doi.org/10.1074/mcp.RA118.000696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030718PMC
July 2018

Combined ASRGL1 and p53 immunohistochemistry as an independent predictor of survival in endometrioid endometrial carcinoma.

Authors:
Jutta Huvila Teemu D Laajala Per-Henrik Edqvist Adil Mardinoglu Lauri Talve Fredrik Pontén Seija Grénman Olli Carpén Tero Aittokallio Annika Auranen

Gynecol Oncol 2018 04 2;149(1):173-180. Epub 2018 Mar 2.

Department of Gynaecology and Obstetrics, University of Tampere, Tampere University Hospital, PL2000, 33521 Tampere, Finland.

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http://dx.doi.org/10.1016/j.ygyno.2018.02.016DOI Listing
April 2018

U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden.

Authors:
Bengt Glimelius Beatrice Melin Gunilla Enblad Irina Alafuzoff Anna Beskow Håkan Ahlström Anna Bill-Axelson Helgi Birgisson Ove Björ Per-Henrik Edqvist Tony Hansson Thomas Helleday Per Hellman Kerstin Henriksson Göran Hesselager Magnus Hultdin Michael Häggman Martin Höglund Håkan Jonsson Chatarina Larsson Henrik Lindman Ingrid Ljuslinder Stephanie Mindus Peter Nygren Fredrik Pontén Katrine Riklund Richard Rosenquist Fredrik Sandin Jochen M Schwenk Roger Stenling Karin Stålberg Peter Stålberg Christer Sundström Camilla Thellenberg Karlsson Bengt Westermark Anders Bergh Lena Claesson-Welsh Richard Palmqvist Tobias Sjöblom

Acta Oncol 2018 Feb 20;57(2):187-194. Epub 2017 Jun 20.

a Department of Immunology, Genetics and Pathology , Uppsala University , Uppsala , Sweden.

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http://dx.doi.org/10.1080/0284186X.2017.1337926DOI Listing
February 2018

In situ protein detection with enhanced specificity using DNA-conjugated antibodies and proximity ligation.

Authors:
Agata Zieba Fredrik Ponten Mathias Uhlén Ulf Landegren

Mod Pathol 2018 02 22;31(2):253-263. Epub 2017 Sep 22.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, BMC, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1038/modpathol.2017.102DOI Listing
February 2018

Cetuximab sensitivity of head and neck squamous cell carcinoma xenografts is associated with treatment-induced reduction in EGFR, pEGFR, and pSrc.

Authors:
Adam Jedlinski Stina Garvin Ann-Charlotte Johansson Per-Henrik Edqvist Fredrik Ponten Karin Roberg

J Oral Pathol Med 2017 Oct 28;46(9):717-724. Epub 2017 Jan 28.

Department of ENT - Head and Neck Surgery, County Council of Östergötland, Linköping, Sweden.

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http://doi.wiley.com/10.1111/jop.12545
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http://dx.doi.org/10.1111/jop.12545DOI Listing
October 2017

High RBM3 expression is associated with an improved survival and oxaliplatin response in patients with metastatic colorectal cancer.

Authors:
Christina Siesing Halfdan Sorbye Anca Dragomir Per Pfeiffer Camilla Qvortrup Fredrik Pontén Karin Jirström Bengt Glimelius Jakob Eberhard

PLoS One 2017 11;12(8):e0182512. Epub 2017 Aug 11.

Department of Clinical Sciences, Division of Oncology and Pathology, Lund University, Skåne University Hospital, Lund, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0182512PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5553773PMC
October 2017

A specific antibody to detect transcription factor T-Pit: a reliable marker of corticotroph cell differentiation and a tool to improve the classification of pituitary neuroendocrine tumours.

Authors:
Evelina Sjöstedt Jens Bollerslev Jan Mulder Cecilia Lindskog Fredrik Pontén Olivera Casar-Borota

Acta Neuropathol 2017 Oct 19;134(4):675-677. Epub 2017 Aug 19.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1007/s00401-017-1768-9DOI Listing
October 2017

Breast cancer in young women and prognosis: How important are proliferation markers?

Authors:
Hanna Fredholm Kristina Magnusson Linda S Lindström Nicholas P Tobin Henrik Lindman Jonas Bergh Lars Holmberg Fredrik Pontén Jan Frisell Irma Fredriksson

Eur J Cancer 2017 10 29;84:278-289. Epub 2017 Aug 29.

Karolinska Institutet, Department of Molecular Medicine and Surgery, Stockholm, Sweden; Department of Breast- and Endocrine Surgery, Karolinska University Hospital, Stockholm, Sweden.

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http://dx.doi.org/10.1016/j.ejca.2017.07.044DOI Listing
October 2017

Tumoral ANXA1 Is a Predictive Marker for Sunitinib Treatment of Renal Cancer Patients.

Authors:
Marjut Niinivirta Gunilla Enblad Per-Henrik Edqvist Fredrik Pontén Anca Dragomir Gustav J Ullenhag

J Cancer 2017 23;8(19):3975-3983. Epub 2017 Oct 23.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.7150/jca.20889DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705999PMC
October 2017

Serotonin, ATRX, and DAXX Expression in Pituitary Adenomas: Markers in the Differential Diagnosis of Neuroendocrine Tumors of the Sellar Region.

Authors:
Olivera Casar-Borota Johan Botling Dan Granberg Jerker Stigare Johan Wikström Henning Bünsow Boldt Bjarne Winther Kristensen Fredrik Pontén Jacqueline Trouillas

Am J Surg Pathol 2017 Sep;41(9):1238-1246

Departments of *Immunology, Genetics and Pathology §Medical Sciences ∥Surgical Sciences, Uppsala University †Department of Clinical Pathology, Uppsala University Hospital, Uppsala, Sweden ‡Department of Pathology, Oslo University Hospital, Oslo, Norway ¶Department of Pathology, Odense University Hospital #Department of Clinical Research, University of Southern Denmark, Odense, Denmark **Faculty of Medicine Lyon-Est ††Centre de Pathologie et de Biologie Est, Groupement Hospitalier Est, Hospices Civils de Lyon, University of Lyon, Lyon, France.

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http://dx.doi.org/10.1097/PAS.0000000000000908DOI Listing
September 2017

A pathology atlas of the human cancer transcriptome.

Authors:
Mathias Uhlen Cheng Zhang Sunjae Lee Evelina Sjöstedt Linn Fagerberg Gholamreza Bidkhori Rui Benfeitas Muhammad Arif Zhengtao Liu Fredrik Edfors Kemal Sanli Kalle von Feilitzen Per Oksvold Emma Lundberg Sophia Hober Peter Nilsson Johanna Mattsson Jochen M Schwenk Hans Brunnström Bengt Glimelius Tobias Sjöblom Per-Henrik Edqvist Dijana Djureinovic Patrick Micke Cecilia Lindskog Adil Mardinoglu Fredrik Ponten

Science 2017 08;357(6352)

Department of Immunology Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1126/science.aan2507DOI Listing
August 2017

Reaching the limits of prognostication in non-small cell lung cancer: an optimized biomarker panel fails to outperform clinical parameters.

Authors:
Marianna Grinberg Dijana Djureinovic Hans Rr Brunnström Johanna Sm Mattsson Karolina Edlund Jan G Hengstler Linnea La Fleur Simon Ekman Hirsh Koyi Eva Branden Elisabeth Ståhle Karin Jirström Derek K Tracy Fredrik Pontén Johan Botling Jörg Rahnenführer Patrick Micke

Mod Pathol 2017 07 10;30(7):964-977. Epub 2017 Mar 10.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1038/modpathol.2017.14DOI Listing
July 2017

Tumoral cubilin is a predictive marker for treatment of renal cancer patients with sunitinib and sorafenib.

Authors:
Marjut Niinivirta Gunilla Enblad Per-Henrik Edqvist Fredrik Pontén Anca Dragomir Gustav J Ullenhag

J Cancer Res Clin Oncol 2017 Jun 4;143(6):961-970. Epub 2017 Mar 4.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1007/s00432-017-2365-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5427164PMC
June 2017

Affinity Proteomics Exploration of Melanoma Identifies Proteins in Serum with Associations to T-Stage and Recurrence.

Authors:
Sanna Byström Claudia Fredolini Per-Henrik Edqvist Etienne-Nicholas Nyaiesh Kimi Drobin Mathias Uhlén Michael Bergqvist Fredrik Pontén Jochen M Schwenk

Transl Oncol 2017 Jun 20;10(3):385-395. Epub 2017 Apr 20.

Affinity Proteomics, SciLifeLab, KTH - Royal Institute of Technology, 171 65 Solna, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.tranon.2017.03.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5403766PMC
June 2017

Mast Cell Infiltration in Human Brain Metastases Modulates the Microenvironment and Contributes to the Metastatic Potential.

Authors:
Ananya Roy Sylwia Libard Holger Weishaupt Ida Gustavsson Lene Uhrbom Göran Hesselager Fredrik J Swartling Fredrik Pontén Irina Alafuzoff Elena Tchougounova

Front Oncol 2017 2;7:115. Epub 2017 Jun 2.

Department of Immunology, Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Uppsala, Sweden.

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http://dx.doi.org/10.3389/fonc.2017.00115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5454042PMC
June 2017

A subcellular map of the human proteome.

Authors:
Peter J Thul Lovisa Åkesson Mikaela Wiking Diana Mahdessian Aikaterini Geladaki Hammou Ait Blal Tove Alm Anna Asplund Lars Björk Lisa M Breckels Anna Bäckström Frida Danielsson Linn Fagerberg Jenny Fall Laurent Gatto Christian Gnann Sophia Hober Martin Hjelmare Fredric Johansson Sunjae Lee Cecilia Lindskog Jan Mulder Claire M Mulvey Peter Nilsson Per Oksvold Johan Rockberg Rutger Schutten Jochen M Schwenk Åsa Sivertsson Evelina Sjöstedt Marie Skogs Charlotte Stadler Devin P Sullivan Hanna Tegel Casper Winsnes Cheng Zhang Martin Zwahlen Adil Mardinoglu Fredrik Pontén Kalle von Feilitzen Kathryn S Lilley Mathias Uhlén Emma Lundberg

Science 2017 05 11;356(6340). Epub 2017 May 11.

Science for Life Laboratory, School of Biotechnology, KTH Royal Institute of Technology, SE-171 21 Stockholm, Sweden.

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http://dx.doi.org/10.1126/science.aal3321DOI Listing
May 2017

Serglycin as a potential biomarker for glioma: association of serglycin expression, extent of mast cell recruitment and glioblastoma progression.

Authors:
Ananya Roy Sanaz Attarha Holger Weishaupt Per-Henrik Edqvist Fredrik J Swartling Michael Bergqvist Florian A Siebzehnrubl Anja Smits Fredrik Pontén Elena Tchougounova

Oncotarget 2017 Apr;8(15):24815-24827

Uppsala University, Department of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala, Sweden.

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http://dx.doi.org/10.18632/oncotarget.15820DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5421891PMC
April 2017

The Human Adrenal Gland Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Authors:
Julia Bergman Johan Botling Linn Fagerberg Björn M Hallström Dijana Djureinovic Mathias Uhlén Fredrik Pontén

Endocrinology 2017 02;158(2):239-251

Department of Immunology Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1210/en.2016-1758DOI Listing
February 2017

A systematic search strategy identifies cubilin as independent prognostic marker for renal cell carcinoma.

Authors:
Gabriela Gremel Dijana Djureinovic Marjut Niinivirta Alexander Laird Oscar Ljungqvist Henrik Johannesson Julia Bergman Per-Henrik Edqvist Sanjay Navani Naila Khan Tushar Patil Åsa Sivertsson Mathias Uhlén David J Harrison Gustav J Ullenhag Grant D Stewart Fredrik Pontén

BMC Cancer 2017 01 4;17(1). Epub 2017 Jan 4.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1186/s12885-016-3030-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5215231PMC
January 2017

The protein phosphatase 2A regulatory subunit PR70 is a gonosomal melanoma tumor suppressor gene.

Authors:
Léon C L van Kempen Margaret Redpath Mounib Elchebly Kathleen Oros Klein Andreas I Papadakis James S Wilmott Richard A Scolyer Per-Henrik Edqvist Fredrik Pontén Dirk Schadendorf Anke F van Rijk Stefan Michiels Anne Dumay Anne Helbling-Leclerc Philippe Dessen Jasper Wouters Marguerite Stass Celia M T Greenwood Ghanem E Ghanem Joost van den Oord Jean Feunteun Alan Spatz

Sci Transl Med 2016 12;8(369):369ra177

Department of Pathology, McGill University, Montreal, Quebec, Canada.

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http://dx.doi.org/10.1126/scitranslmed.aai9188DOI Listing
December 2016

Long-term outcome in young women with breast cancer: a population-based study.

Authors:
Hanna Fredholm Kristina Magnusson Linda S Lindström Hans Garmo Sonja Eaker Fält Henrik Lindman Jonas Bergh Lars Holmberg Fredrik Pontén Jan Frisell Irma Fredriksson

Breast Cancer Res Treat 2016 11 13;160(1):131-143. Epub 2016 Sep 13.

Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.1007/s10549-016-3983-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050247PMC
November 2016

PROX1 is a novel pathway-specific prognostic biomarker for high-grade astrocytomas; results from independent glioblastoma cohorts stratified by age and IDH mutation status.

Authors:
Kenney R Roodakker Tamador Elsir Per-Henrik D Edqvist Daniel Hägerstrand Joseph Carlson Malgorzata Lysiak Roger Henriksson Fredrik Pontén Johan Rosell Peter Söderkvist Roger Stupp Elena Tchougounova Monica Nistér Annika Malmström Anja Smits

Oncotarget 2016 Nov;7(45):72431-72442

Department of Neuroscience, Neurology, Uppsala University, University Hospital, Uppsala, Sweden.

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http://dx.doi.org/10.18632/oncotarget.11957DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341919PMC
November 2016

A stromal cell population in the large intestine identified by tissue factor expression that is lost during colorectal cancer progression.

Authors:
Oskar Eriksson Anna Asplund Geeta Hegde Per-Henrik Edqvist Sanjay Navani Fredrik Pontén Agneta Siegbahn

Thromb Haemost 2016 Nov 22;116(6):1050-1059. Epub 2016 Sep 22.

Agneta Siegbahn, Department of Medical Sciences, Clinical Chemistry, University Hospital, Entr. 61, 3rd floor, S-751 85 Uppsala, Sweden, Tel.: +46 186114251, Fax: +46 18552562, E-mail:

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http://dx.doi.org/10.1160/TH16-04-0267DOI Listing
November 2016

Extension of diffuse low-grade gliomas beyond radiological borders as shown by the coregistration of histopathological and magnetic resonance imaging data.

Authors:
Maria Zetterling Kenney R Roodakker Shala Ghaderi Berntsson Per-Henrik Edqvist Francesco Latini Anne-Marie Landtblom Fredrik Pontén Irina Alafuzoff Elna-Marie Larsson Anja Smits

J Neurosurg 2016 11 26;125(5):1155-1166. Epub 2016 Feb 26.

Department of Neuroscience, Neurology, Uppsala University.

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http://dx.doi.org/10.3171/2015.10.JNS15583DOI Listing
November 2016

ANLN is a prognostic biomarker independent of Ki-67 and essential for cell cycle progression in primary breast cancer.

Authors:
Kristina Magnusson Gabriela Gremel Lisa Rydén Victor Pontén Mathias Uhlén Anna Dimberg Karin Jirström Fredrik Pontén

BMC Cancer 2016 11 18;16(1):904. Epub 2016 Nov 18.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1186/s12885-016-2923-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5116155PMC
November 2016

Gene-specific correlation of RNA and protein levels in human cells and tissues.

Authors:
Fredrik Edfors Frida Danielsson Björn M Hallström Lukas Käll Emma Lundberg Fredrik Pontén Björn Forsström Mathias Uhlén

Mol Syst Biol 2016 Oct 20;12(10):883. Epub 2016 Oct 20.

Science for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden

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http://dx.doi.org/10.15252/msb.20167144DOI Listing
October 2016

Tissue microarray profiling in human heart failure.

Authors:
Sean Lal Lisa Nguyen Rhenan Tezone Fredrik Ponten Jacob Odeberg Amy Li Cristobal Dos Remedios

Proteomics 2016 09 11;16(17):2319-26. Epub 2016 Aug 11.

Department of Anatomy and Histology, Bosch Institute, Sydney Medical School, The University of Sydney, Sydney, Australia.

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September 2016

Analysis of Body-wide Unfractionated Tissue Data to Identify a Core Human Endothelial Transcriptome.

Authors:
Lynn Marie Butler Björn Mikael Hallström Linn Fagerberg Fredrik Pontén Mathias Uhlén Thomas Renné Jacob Odeberg

Cell Syst 2016 09 15;3(3):287-301.e3. Epub 2016 Sep 15.

Science for Life Laboratory, School of Biotechnology, Royal Institute of Technology (KTH), 171 21 Stockholm, Sweden; Coagulation Unit, Centre for Hematology, Karolinska University Hospital, 171 76 Stockholm, Sweden.

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http://dx.doi.org/10.1016/j.cels.2016.08.001DOI Listing
September 2016

SATB2 is expressed in Merkel cell carcinoma.

Authors:
Mari Fukuhara Margrét Agnarsdóttir Per-Henrik Edqvist Anna Coter Fredrik Ponten

Arch Dermatol Res 2016 Aug 4;308(6):449-54. Epub 2016 Jun 4.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, 751 85, Uppsala, Sweden.

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http://dx.doi.org/10.1007/s00403-016-1655-6DOI Listing
August 2016

Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer.

Authors:
Johanna S M Mattsson Hans Brunnström Verena Jabs Karolina Edlund Karin Jirström Stephanie Mindus Linnéa la Fleur Fredrik Pontén Mats G Karlsson Christina Karlsson Hirsh Koyi Eva Brandén Johan Botling Gisela Helenius Patrick Micke Maria A Svensson

BMC Cancer 2016 08 5;16:603. Epub 2016 Aug 5.

Clinical Research Center, Faculty of Medicine and Health, Örebro University, Örebro, Sweden.

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http://dx.doi.org/10.1186/s12885-016-2646-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974795PMC
August 2016

Survival-associated heterogeneity of marker-defined perivascular cells in colorectal cancer.

Authors:
Artur Mezheyeuski Maja Bradic Lindh Tormod Kyrre Guren Anca Dragomir Per Pfeiffer Elin H Kure Tone Ikdahl Eva Skovlund Sara Corvigno Carina Strell Kristian Pietras Fredrik Ponten Jan Mulder Camilla Qvortrup Anna Portyanko Kjell Magne Tveit Bengt Glimelius Halfdan Sorbye Arne Östman

Oncotarget 2016 07;7(27):41948-41958

Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.18632/oncotarget.9632DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5173107PMC
July 2016

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Authors:
Patrik L Ståhl Fredrik Salmén Sanja Vickovic Anna Lundmark José Fernández Navarro Jens Magnusson Stefania Giacomello Michaela Asp Jakub O Westholm Mikael Huss Annelie Mollbrink Sten Linnarsson Simone Codeluppi Åke Borg Fredrik Pontén Paul Igor Costea Pelin Sahlén Jan Mulder Olaf Bergmann Joakim Lundeberg Jonas Frisén

Science 2016 Jul;353(6294):78-82

Department of Cell and Molecular Biology, Karolinska Institute, SE-171 77 Stockholm, Sweden.

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http://dx.doi.org/10.1126/science.aaf2403DOI Listing
July 2016

Profiling cancer testis antigens in non-small-cell lung cancer.

Authors:
Dijana Djureinovic Björn M Hallström Masafumi Horie Johanna Sofia Margareta Mattsson Linnea La Fleur Linn Fagerberg Hans Brunnström Cecilia Lindskog Katrin Madjar Jörg Rahnenführer Simon Ekman Elisabeth Ståhle Hirsh Koyi Eva Brandén Karolina Edlund Jan G Hengstler Mats Lambe Akira Saito Johan Botling Fredrik Pontén Mathias Uhlén Patrick Micke

JCI Insight 2016 07 7;1(10):e86837. Epub 2016 Jul 7.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1172/jci.insight.86837DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033889PMC
July 2016

GPR44 is a pancreatic protein restricted to the human beta cell.

Authors:
Ewa Hellström-Lindahl Angelika Danielsson Fredrik Ponten Paul Czernichow Olle Korsgren Lars Johansson Olof Eriksson

Acta Diabetol 2016 Jun 14;53(3):413-21. Epub 2015 Oct 14.

Department of Medicinal Chemistry, Preclinical PET Platform, Uppsala University, 751 83, Uppsala, Sweden.

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http://dx.doi.org/10.1007/s00592-015-0811-3DOI Listing
June 2016

The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Authors:
Masato Habuka Linn Fagerberg Björn M Hallström Fredrik Pontén Tadashi Yamamoto Mathias Uhlen

PLoS One 2015 22;10(12):e0145301. Epub 2015 Dec 22.

Science for Life Laboratory, KTH - Royal Institute of Technology, SE-171 21, Stockholm, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4687928PMC
June 2016

Guidance Molecule SEMA3A Restricts Tumor Growth by Differentially Regulating the Proliferation of Tumor-Associated Macrophages.

Authors:
Majken Wallerius Tatjana Wallmann Margarita Bartish Jeanette Östling Artur Mezheyeuski Nicholas P Tobin Emma Nygren Pradeepa Pangigadde Paola Pellegrini Mario Leonardo Squadrito Fredrik Pontén Johan Hartman Jonas Bergh Angelo De Milito Michele De Palma Arne Östman John Andersson Charlotte Rolny

Cancer Res 2016 06 6;76(11):3166-78. Epub 2016 Apr 6.

Department of Oncology-Pathology, Cancer Center Karolinska, Karolinska Institute, Stockholm, Sweden.

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http://dx.doi.org/10.1158/0008-5472.CAN-15-2596DOI Listing
June 2016

Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer.

Authors:
Gillian O'Hurley Christer Busch Linn Fagerberg Björn M Hallström Charlotte Stadler Anna Tolf Emma Lundberg Jochen M Schwenk Karin Jirström Anders Bjartell William M Gallagher Mathias Uhlén Fredrik Pontén

PLoS One 2015 3;10(8):e0133449. Epub 2015 Aug 3.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0133449PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4523174PMC
May 2016

Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex.

Authors:
Evelina Sjöstedt Linn Fagerberg Björn M Hallström Anna Häggmark Nicholas Mitsios Peter Nilsson Fredrik Pontén Tomas Hökfelt Mathias Uhlén Jan Mulder

PLoS One 2015 15;10(6):e0130028. Epub 2015 Jun 15.

Science for Life Laboratory, Department of Neuroscience, Karolinska Institute, Stockholm, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4468152PMC
April 2016

High BRAF Mutation Frequency and Marked Survival Differences in Subgroups According to KRAS/BRAF Mutation Status and Tumor Tissue Availability in a Prospective Population-Based Metastatic Colorectal Cancer Cohort.

Authors:
Halfdan Sorbye Anca Dragomir Magnus Sundström Per Pfeiffer Ulf Thunberg Monica Bergfors Kristine Aasebø Geir Egil Eide Fredrik Ponten Camilla Qvortrup Bengt Glimelius

PLoS One 2015 29;10(6):e0131046. Epub 2015 Jun 29.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4484806PMC
April 2016

Transcriptomics resources of human tissues and organs.

Authors:
Mathias Uhlén Björn M Hallström Cecilia Lindskog Adil Mardinoglu Fredrik Pontén Jens Nielsen

Mol Syst Biol 2016 Apr 4;12(4):862. Epub 2016 Apr 4.

Science for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Hørsholm, Denmark Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.

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http://dx.doi.org/10.15252/msb.20155865DOI Listing
April 2016

Oncogene-Induced Senescence in Pituitary Adenomas--an Immunohistochemical Study.

Authors:
Emilija Manojlovic-Gacic Milica Skender-Gazibara Vera Popovic Ivan Soldatovic Novica Boricic Savo Raicevic Sandra Pekic Mirjana Doknic Dragana Miljic Irina Alafuzoff Fredrik Pontén Olivera Casar-Borota

Endocr Pathol 2016 Mar;27(1):1-11

Department of Immunology, Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala, Sweden.

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http://dx.doi.org/10.1007/s12022-015-9405-4DOI Listing
March 2016

System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.

Authors:
Yair Pozniak Nora Balint-Lahat Jan Daniel Rudolph Cecilia Lindskog Rotem Katzir Camilla Avivi Fredrik Pontén Eytan Ruppin Iris Barshack Tamar Geiger

Cell Syst 2016 03 3;2(3):172-84. Epub 2016 Mar 3.

Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2016.02.001DOI Listing
March 2016

Pleiotrophin promotes vascular abnormalization in gliomas and correlates with poor survival in patients with astrocytomas.

Authors:
Lei Zhang Soumi Kundu Tjerk Feenstra Xiujuan Li Chuan Jin Liisi Laaniste Tamador Elsir Abu El Hassan K Elisabet Ohlin Di Yu Tommie Olofsson Anna-Karin Olsson Fredrik Pontén Peetra U Magnusson Karin Forsberg Nilsson Magnus Essand Anja Smits Lothar C Dieterich Anna Dimberg

Sci Signal 2015 Dec 8;8(406):ra125. Epub 2015 Dec 8.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, The Rudbeck Laboratory, 75185 Uppsala, Sweden.

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http://dx.doi.org/10.1126/scisignal.aaa1690DOI Listing
December 2015

Elevated expression of the C-type lectin CD93 in the glioblastoma vasculature regulates cytoskeletal rearrangements that enhance vessel function and reduce host survival.

Authors:
Elise Langenkamp Lei Zhang Roberta Lugano Hua Huang Tamador Elsir Abu Elhassan Maria Georganaki Wesam Bazzar Johan Lööf George Trendelenburg Magnus Essand Fredrik Pontén Anja Smits Anna Dimberg

Cancer Res 2015 Nov 11;75(21):4504-16. Epub 2015 Sep 11.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, The Rudbeck Laboratory, Uppsala University, Uppsala, Sweden.

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http://cancerres.aacrjournals.org/lookup/doi/10.1158/0008-54
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November 2015

The Human Endometrium-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Authors:
Agata Zieba Evelina Sjöstedt Matts Olovsson Linn Fagerberg Björn M Hallström Linda Oskarsson Karolina Edlund Anna Tolf Mathias Uhlen Fredrik Ponten

OMICS 2015 Nov 21;19(11):659-68. Epub 2015 Oct 21.

1 Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University , Uppsala, Sweden .

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http://dx.doi.org/10.1089/omi.2015.0115DOI Listing
November 2015

The kidney transcriptome and proteome defined by transcriptomics and antibody-based profiling.

Authors:
Masato Habuka Linn Fagerberg Björn M Hallström Caroline Kampf Karolina Edlund Åsa Sivertsson Tadashi Yamamoto Fredrik Pontén Mathias Uhlén Jacob Odeberg

PLoS One 2014 31;9(12):e116125. Epub 2014 Dec 31.

School of Biotechnology, Science for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden; Department of Medicine, Karolinska Institutet and Centre for Hematology, Karolinska University Hospital, Stockholm, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4281243PMC
October 2015

The human pancreas proteome defined by transcriptomics and antibody-based profiling.

Authors:
Angelika Danielsson Fredrik Pontén Linn Fagerberg Björn M Hallström Jochen M Schwenk Mathias Uhlén Olle Korsgren Cecilia Lindskog

PLoS One 2014 29;9(12):e115421. Epub 2014 Dec 29.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115421PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4278897PMC
September 2015

Glioma-derived plasminogen activator inhibitor-1 (PAI-1) regulates the recruitment of LRP1 positive mast cells.

Authors:
Ananya Roy Antoine Coum Voichita D Marinescu Jelena Põlajeva Anja Smits Sven Nelander Lene Uhrbom Bengt Westermark Karin Forsberg-Nilsson Fredrik Pontén Elena Tchougounova

Oncotarget 2015 Sep;6(27):23647-61

Department of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden.

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http://www.oncotarget.com/fulltext/4640
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http://dx.doi.org/10.18632/oncotarget.4640DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4695142PMC
September 2015

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium.

Authors:
Nancy Yiu-Lin Yu Björn M Hallström Linn Fagerberg Fredrik Ponten Hideya Kawaji Piero Carninci Alistair R R Forrest Yoshihide Hayashizaki Mathias Uhlén Carsten O Daub

Nucleic Acids Res 2015 Aug 27;43(14):6787-98. Epub 2015 Jun 27.

Department of Biosciences and Nutrition, Karolinska Institute, Huddinge, 14183, Sweden Science for Life Laboratory, Karolinska Institute, Solna, 17121, Sweden RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies, RIKEN Yokohama Institute, Tsurumi-ku, Yokohama, 230-0045, Japan RIKEN Omics Science Center1, Yokohama, Kanagawa, 230-0045, Japan

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http://dx.doi.org/10.1093/nar/gkv608DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4538815PMC
August 2015

Epigenetic activation of a cryptic TBC1D16 transcript enhances melanoma progression by targeting EGFR.

Authors:
Miguel Vizoso Humberto J Ferreira Paula Lopez-Serra F Javier Carmona Anna Martínez-Cardús Maria Romina Girotti Alberto Villanueva Sonia Guil Catia Moutinho Julia Liz Anna Portela Holger Heyn Sebastian Moran August Vidal Maria Martinez-Iniesta Jose L Manzano Maria Teresa Fernandez-Figueras Elena Elez Eva Muñoz-Couselo Rafael Botella-Estrada Alfonso Berrocal Fredrik Pontén Joost van den Oord William M Gallagher Dennie T Frederick Keith T Flaherty Ultan McDermott Paul Lorigan Richard Marais Manel Esteller

Nat Med 2015 Jul 1;21(7):741-50. Epub 2015 Jun 1.

1] Cancer Epigenetics and Biology Program, Bellvitge Biomedical Research Institute, L'Hospitalet, Barcelona, Catalonia, Spain. [2] Department of Physiological Sciences II, School of Medicine, University of Barcelona, Barcelona, Catalonia, Spain. [3] Institucio Catalana de Recerca i Estudis Avançats, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1038/nm.3863DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968631PMC
July 2015

Foxf2 Is Required for Brain Pericyte Differentiation and Development and Maintenance of the Blood-Brain Barrier.

Authors:
Azadeh Reyahi Ali M Nik Mozhgan Ghiami Amel Gritli-Linde Fredrik Pontén Bengt R Johansson Peter Carlsson

Dev Cell 2015 Jul 25;34(1):19-32. Epub 2015 Jun 25.

Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 405 30 Gothenburg, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2015.05.008DOI Listing
July 2015

Human cytomegalovirus tegument protein pp65 is detected in all intra- and extra-axial brain tumours independent of the tumour type or grade.

Authors:
Sylwia Libard Svetlana N Popova Rose-Marie Amini Vesa Kärjä Timo Pietiläinen Kirsi M Hämäläinen Christer Sundström Göran Hesselager Michael Bergqvist Simon Ekman Maria Zetterling Anja Smits Pelle Nilsson Susan Pfeifer Teresita Diaz de Ståhl Gunilla Enblad Fredrik Ponten Irina Alafuzoff

PLoS One 2014 30;9(9):e108861. Epub 2014 Sep 30.

Department of Pathology, Uppsala University Hospital, Uppsala, Sweden; Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4182568PMC
June 2015

Loss of ASRGL1 expression is an independent biomarker for disease-specific survival in endometrioid endometrial carcinoma.

Authors:
Per-Henrik D Edqvist Jutta Huvila Björn Forsström Lauri Talve Olli Carpén Helga B Salvesen Camilla Krakstad Seija Grénman Henrik Johannesson Oscar Ljungqvist Mathias Uhlén Fredrik Pontén Annika Auranen

Gynecol Oncol 2015 Jun 7;137(3):529-37. Epub 2015 Apr 7.

Department of Gynecology and Obstetrics, University of Turku, Turku, Finland; Department of Gynecology and Obstetrics, Turku University Hospital, Turku, Finland.

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http://dx.doi.org/10.1016/j.ygyno.2015.03.055DOI Listing
June 2015

Tumor vessel up-regulation of INSR revealed by single-cell expression analysis of the tyrosine kinome and phosphatome in human cancers.

Authors:
Sara Kiflemariam Viktor Ljungström Fredrik Pontén Tobias Sjöblom

Am J Pathol 2015 Jun 10;185(6):1600-9. Epub 2015 Apr 10.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.ajpath.2015.02.019DOI Listing
June 2015

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling.

Authors:
Cecilia Lindskog Jerker Linné Linn Fagerberg Björn M Hallström Carl Johan Sundberg Malene Lindholm Mikael Huss Caroline Kampf Howard Choi David A Liem Peipei Ping Leif Väremo Adil Mardinoglu Jens Nielsen Erik Larsson Fredrik Pontén Mathias Uhlén

BMC Genomics 2015 Jun 25;16:475. Epub 2015 Jun 25.

Science for Life Laboratory, KTH - Royal Institute of Technology, AlbaNova University Center, SE-171 21, Stockholm, Sweden.

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http://dx.doi.org/10.1186/s12864-015-1686-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479346PMC
June 2015

A prognosis based classification of undifferentiated uterine sarcomas: identification of mitotic index, hormone receptors and YWHAE-FAM22 translocation status as predictors of survival.

Authors:
Gabriela Gremel Markus Liew Farzaneh Hamzei Elin Hardell Jonas Selling Mehran Ghaderi Sten Stemme Fredrik Pontén Joseph W Carlson

Int J Cancer 2015 Apr 27;136(7):1608-18. Epub 2014 Aug 27.

Department of Immunology, Genetics and Pathology, Uppsala University, S-751 85, Uppsala, Sweden; Science for Life Laboratory, Uppsala University, S-751 85, Uppsala, Sweden.

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http://dx.doi.org/10.1002/ijc.29141DOI Listing
April 2015

FGF2 as a potential prognostic biomarker for proneural glioma patients.

Authors:
Linda Sooman Eva Freyhult Archita Jaiswal Sanjay Navani Per-Henrik Edqvist Fredrik Pontén Elena Tchougounova Anja Smits Tamador Elsir Joachim Gullbo Johan Lennartsson Michael Bergqvist Simon Ekman

Acta Oncol 2015 Mar 29;54(3):385-94. Epub 2014 Sep 29.

Department of Radiology, Oncology and Radiation Sciences, Section of Oncology, Rudbeck Laboratory , Uppsala , Sweden.

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http://dx.doi.org/10.3109/0284186X.2014.951492DOI Listing
March 2015

Expression of human skin-specific genes defined by transcriptomics and antibody-based profiling.

Authors:
Per-Henrik D Edqvist Linn Fagerberg Björn M Hallström Angelika Danielsson Karolina Edlund Mathias Uhlén Fredrik Pontén

J Histochem Cytochem 2015 02 19;63(2):129-41. Epub 2014 Nov 19.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden (PHDE, AD, KE, FP)

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http://dx.doi.org/10.1369/0022155414562646DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4305515PMC
February 2015

The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling.

Authors:
Gabriela Gremel Alkwin Wanders Jonathan Cedernaes Linn Fagerberg Björn Hallström Karolina Edlund Evelina Sjöstedt Mathias Uhlén Fredrik Pontén

J Gastroenterol 2015 Jan 1;50(1):46-57. Epub 2014 May 1.

Department of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Dag Hammarskjölds Väg 20, 751 85, Uppsala, Sweden,

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http://dx.doi.org/10.1007/s00535-014-0958-7DOI Listing
January 2015

Prognostic impact of COX-2 in non-small cell lung cancer: a comprehensive compartment-specific evaluation of tumor and stromal cell expression.

Authors:
Johanna S M Mattsson Bengt Bergman Marianna Grinberg Karolina Edlund Millaray Marincevic Karin Jirström Fredrik Pontén Jan G Hengstler Jörg Rahnenführer Mats G Karlsson Christina Karlsson Gisela Helenius Johan Botling Patrick Micke Miklos Gulyas

Cancer Lett 2015 Jan 31;356(2 Pt B):837-45. Epub 2014 Oct 31.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1016/j.canlet.2014.10.032DOI Listing
January 2015

Proteomics. Tissue-based map of the human proteome.

Authors:
Mathias Uhlén Linn Fagerberg Björn M Hallström Cecilia Lindskog Per Oksvold Adil Mardinoglu Åsa Sivertsson Caroline Kampf Evelina Sjöstedt Anna Asplund IngMarie Olsson Karolina Edlund Emma Lundberg Sanjay Navani Cristina Al-Khalili Szigyarto Jacob Odeberg Dijana Djureinovic Jenny Ottosson Takanen Sophia Hober Tove Alm Per-Henrik Edqvist Holger Berling Hanna Tegel Jan Mulder Johan Rockberg Peter Nilsson Jochen M Schwenk Marica Hamsten Kalle von Feilitzen Mattias Forsberg Lukas Persson Fredric Johansson Martin Zwahlen Gunnar von Heijne Jens Nielsen Fredrik Pontén

Science 2015 Jan;347(6220):1260419

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, SE-751 85 Uppsala, Sweden·

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http://dx.doi.org/10.1126/science.1260419DOI Listing
January 2015

The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling.

Authors:
Cecilia Lindskog Linn Fagerberg Björn Hallström Karolina Edlund Birte Hellwig Jörg Rahnenführer Caroline Kampf Mathias Uhlén Fredrik Pontén Patrick Micke

FASEB J 2014 Dec 28;28(12):5184-96. Epub 2014 Aug 28.

Rudbeck Laboratory, Science for Life Laboratory, Uppsala University, Uppsala, Sweden;

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http://dx.doi.org/10.1096/fj.14-254862DOI Listing
December 2014

Antibody validation of immunohistochemistry for biomarker discovery: recommendations of a consortium of academic and pharmaceutical based histopathology researchers.

Authors:
William J Howat Arthur Lewis Phillipa Jones Caroline Kampf Fredrik Pontén Chris M van der Loos Neil Gray Chris Womack Anthony Warford

Methods 2014 Nov 11;70(1):34-8. Epub 2014 Feb 11.

University of Westminster, London, UK.

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https://linkinghub.elsevier.com/retrieve/pii/S10462023140002
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4240800PMC
November 2014

Aberrantly activated claudin 6 and 18.2 as potential therapy targets in non-small-cell lung cancer.

Authors:
Patrick Micke Johanna Sofia Margareta Mattsson Karolina Edlund Miriam Lohr Karin Jirström Anders Berglund Johan Botling Jörg Rahnenfuehrer Millaray Marincevic Fredrik Pontén Simon Ekman Jan Hengstler Stefan Wöll Ugur Sahin Ozlem Türeci

Int J Cancer 2014 Nov 8;135(9):2206-14. Epub 2014 Apr 8.

Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://doi.wiley.com/10.1002/ijc.28857
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November 2014

Defining the human gallbladder proteome by transcriptomics and affinity proteomics.

Authors:
Caroline Kampf Adil Mardinoglu Linn Fagerberg Björn M Hallström Angelika Danielsson Jens Nielsen Fredrik Pontén Mathias Uhlen

Proteomics 2014 Nov 9;14(21-22):2498-507. Epub 2014 Oct 9.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://doi.wiley.com/10.1002/pmic.201400201
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November 2014

Defining the human adipose tissue proteome to reveal metabolic alterations in obesity.

Authors:
Adil Mardinoglu Caroline Kampf Anna Asplund Linn Fagerberg Björn M Hallström Karolina Edlund Matthias Blüher Fredrik Pontén Mathias Uhlen Jens Nielsen

J Proteome Res 2014 Nov 25;13(11):5106-19. Epub 2014 Sep 25.

Department of Chemical and Biological Engineering, Chalmers University of Technology , 412 96 Gothenburg, Sweden.

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http://dx.doi.org/10.1021/pr500586eDOI Listing
November 2014

Analysis of candidate genes for lineage-specific expression changes in humans and primates.

Authors:
Cecilia Lindskog Martin Kuhlwilm Armaity Davierwala Ning Fu Geeta Hegde Mathias Uhlén Sanjay Navani Svante Pääbo Fredrik Pontén

J Proteome Res 2014 Aug 15;13(8):3596-606. Epub 2014 Jul 15.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University , Dag Hammarskjölds väg 20, SE-751 85 Uppsala, Sweden.

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http://dx.doi.org/10.1021/pr500045fDOI Listing
August 2014

The human liver-specific proteome defined by transcriptomics and antibody-based profiling.

Authors:
Caroline Kampf Adil Mardinoglu Linn Fagerberg Björn M Hallström Karolina Edlund Emma Lundberg Fredrik Pontén Jens Nielsen Mathias Uhlen

FASEB J 2014 Jul 19;28(7):2901-14. Epub 2014 Mar 19.

Science for Life Laboratory and Department of Proteomics, School of Biotechnology, Royal Institute of Technology (KTH), Stockholm, Sweden

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http://dx.doi.org/10.1096/fj.14-250555DOI Listing
July 2014

Affinity proteomics within rare diseases: a BIO-NMD study for blood biomarkers of muscular dystrophies.

Authors:
Burcu Ayoglu Amina Chaouch Hanns Lochmüller Luisa Politano Enrico Bertini Pietro Spitali Monika Hiller Eric H Niks Francesca Gualandi Fredrik Pontén Kate Bushby Annemieke Aartsma-Rus Elena Schwartz Yannick Le Priol Volker Straub Mathias Uhlén Sebahattin Cirak Peter A C 't Hoen Francesco Muntoni Alessandra Ferlini Jochen M Schwenk Peter Nilsson Cristina Al-Khalili Szigyarto

EMBO Mol Med 2014 Jul;6(7):918-36

Department of Proteomics, School of Biotechnology KTH-Royal Institute of Technology, Stockholm, Sweden

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http://dx.doi.org/10.15252/emmm.201303724DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119355PMC
July 2014

Peroxiredoxin-1 protects estrogen receptor α from oxidative stress-induced suppression and is a protein biomarker of favorable prognosis in breast cancer.

Authors:
Patrick C O'Leary Marta Terrile Malgorzata Bajor Pawel Gaj Bryan T Hennessy Gordon B Mills Agnieszka Zagozdzon Darran P O'Connor Donal J Brennan Kate Connor Jane Li Ana Maria Gonzalez-Angulo Han-Dong Sun Jian-Xin Pu Fredrik Pontén Mathias Uhlén Karin Jirström Dominika A Nowis John P Crown Radoslaw Zagozdzon William M Gallagher

Breast Cancer Res 2014 Jul 10;16(4):R79. Epub 2014 Jul 10.

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http://dx.doi.org/10.1186/bcr3691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226972PMC
July 2014

Decreased decorin expression in the tumor microenvironment.

Authors:
Benedek Bozoky Andrii Savchenko Hayrettin Guven Fredrik Ponten George Klein Laszlo Szekely

Cancer Med 2014 Jun 17;3(3):485-91. Epub 2014 Mar 17.

Department of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.1002/cam4.231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101739PMC
June 2014

Garbage in, garbage out: a critical evaluation of strategies used for validation of immunohistochemical biomarkers.

Authors:
Gillian O'Hurley Evelina Sjöstedt Arman Rahman Bo Li Caroline Kampf Fredrik Pontén William M Gallagher Cecilia Lindskog

Mol Oncol 2014 Jun 21;8(4):783-98. Epub 2014 Mar 21.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, 751 85 Uppsala, Sweden.

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http://dx.doi.org/10.1016/j.molonc.2014.03.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5528533PMC
June 2014

PTPN6 expression is epigenetically regulated and influences survival and response to chemotherapy in high-grade gliomas.

Authors:
Linda Sooman Simon Ekman Georgios Tsakonas Archita Jaiswal Sanjay Navani Per-Henrik Edqvist Fredrik Pontén Stefan Bergström Mikael Johansson Xuping Wu Erik Blomquist Michael Bergqvist Joachim Gullbo Johan Lennartsson

Tumour Biol 2014 May 9;35(5):4479-88. Epub 2014 Feb 9.

Rudbeck Laboratory, Section of Oncology, Department of Radiology, Oncology and Radiation Sciences, Uppsala University, 751 85, Uppsala, Sweden,

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http://dx.doi.org/10.1007/s13277-013-1590-5DOI Listing
May 2014

The role of SATB2 as a diagnostic marker for tumors of colorectal origin: Results of a pathology-based clinical prospective study.

Authors:
Anca Dragomir Meike de Wit Christine Johansson Mathias Uhlen Fredrik Pontén

Am J Clin Pathol 2014 May;141(5):630-8

Dept of Immunology, Genetics and Pathology, Uppsala University, 75185 Uppsala, Sweden;

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https://ajcp.oxfordjournals.org/content/ajcpath/141/5/630.fu
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http://ajcp.ascpjournals.org/cgi/doi/10.1309/AJCPWW2URZ9JKQJ
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May 2014

Investigation of molecular alterations of AKT-3 in triple-negative breast cancer.

Authors:
Gillian O'Hurley Etáin Daly Anthony O'Grady Robert Cummins Cecily Quinn Louise Flanagan Aisling Pierce Yue Fan Miriam A Lynn Máirín Rafferty Dara Fitzgerald Fredrik Pontén Michael J Duffy Karin Jirström Elaine W Kay William M Gallagher

Histopathology 2014 Apr 12;64(5):660-70. Epub 2013 Dec 12.

OncoMark Ltd, NovaUCD, Belfield Innovation Park, Belfield, Ireland.

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http://dx.doi.org/10.1111/his.12313DOI Listing
April 2014

WNT5A-mediated β-catenin-independent signalling is a novel regulator of cancer cell metabolism.

Authors:
Victoria Sherwood Shivendra Kumar Chaurasiya Elin J Ekström William Guilmain Qing Liu Tomas Koeck Kate Brown Karin Hansson Margrét Agnarsdóttir Michael Bergqvist Karin Jirström Fredrik Ponten Peter James Tommy Andersson

Carcinogenesis 2014 Apr 30;35(4):784-94. Epub 2013 Nov 30.

Cell and Experimental Pathology, Department of Laboratory Medicine, Lund University, Clinical Research Centre, Skåne University Hospital, SE-20502 Malmö, Sweden.

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http://dx.doi.org/10.1093/carcin/bgt390DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977146PMC
April 2014

Detection of enterovirus in the islet cells of patients with type 1 diabetes: what do we learn from immunohistochemistry?

Authors:
Sara F Hansson Stella Korsgren Fredrik Pontén Olle Korsgren

Diabetologia 2014 Mar 19;57(3):645-6. Epub 2013 Dec 19.

Proteomics Core Facility, University of Gothenburg, Gothenburg, Sweden.

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http://dx.doi.org/10.1007/s00125-013-3138-zDOI Listing
March 2014

Antibody performance in western blot applications is context-dependent.

Authors:
Cajsa Algenäs Charlotta Agaton Linn Fagerberg Anna Asplund Lisa Björling Erik Björling Caroline Kampf Emma Lundberg Peter Nilsson Anja Persson Kenneth Wester Fredrik Pontén Henrik Wernérus Mathias Uhlén Jenny Ottosson Takanen Sophia Hober

Biotechnol J 2014 Mar 29;9(3):435-45. Epub 2014 Jan 29.

Division of Proteomics, School of Biotechnology, Albanova University Center, KTH - Royal Institute of Technology, Stockholm, Sweden.

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http://dx.doi.org/10.1002/biot.201300341DOI Listing
March 2014

Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling.

Authors:
Meike de Wit Huub Kant Sander R Piersma Thang V Pham Sandra Mongera Maaike P A van Berkel Epie Boven Fredrik Pontén Gerrit A Meijer Connie R Jimenez Remond J A Fijneman

J Proteomics 2014 Mar 10;99:26-39. Epub 2014 Jan 10.

Department of Pathology (Tumor Profiling Unit), VU University Medical Center, Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2014.01.001DOI Listing
March 2014

Molecular- and organelle-based predictive paradigm underlying recovery by left ventricular assist device support.

Authors:
David A Liem Ali Nsair Shaun P Setty Martin Cadeiras Ding Wang Robb Maclellan Chris Lotz Amanda J Lin Jason Tabaraki Hua Li Junbo Ge Jacob Odeberg Fredrik Ponten Erik Larson Jan Mulder Emma Lundberg James N Weiss Mathias Uhlen Peipei Ping Mario C Deng

Circ Heart Fail 2014 Mar;7(2):359-66

Departments of Physiology.

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http://dx.doi.org/10.1161/CIRCHEARTFAILURE.113.000250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4397259PMC
March 2014

Glioma-derived macrophage migration inhibitory factor (MIF) promotes mast cell recruitment in a STAT5-dependent manner.

Authors:
Jelena Põlajeva Tobias Bergström Per-Henrik Edqvist Anders Lundequist Anna Sjösten Gunnar Nilsson Anja Smits Michael Bergqvist Fredrik Pontén Bengt Westermark Gunnar Pejler Karin Forsberg Nilsson Elena Tchougounova

Mol Oncol 2014 Feb 18;8(1):50-8. Epub 2013 Sep 18.

Uppsala University, Department of Immunology, Genetics and Pathology, Rudbeck Laboratory, SE-751 85 Uppsala, Sweden. Electronic address:

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http://doi.wiley.com/10.1016/j.molonc.2013.09.002
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5528513PMC
February 2014

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics.

Authors:
Linn Fagerberg Björn M Hallström Per Oksvold Caroline Kampf Dijana Djureinovic Jacob Odeberg Masato Habuka Simin Tahmasebpoor Angelika Danielsson Karolina Edlund Anna Asplund Evelina Sjöstedt Emma Lundberg Cristina Al-Khalili Szigyarto Marie Skogs Jenny Ottosson Takanen Holger Berling Hanna Tegel Jan Mulder Peter Nilsson Jochen M Schwenk Cecilia Lindskog Frida Danielsson Adil Mardinoglu Asa Sivertsson Kalle von Feilitzen Mattias Forsberg Martin Zwahlen IngMarie Olsson Sanjay Navani Mikael Huss Jens Nielsen Fredrik Ponten Mathias Uhlén

Mol Cell Proteomics 2014 Feb 5;13(2):397-406. Epub 2013 Dec 5.

Science for Life Laboratory, KTH - Royal Institute of Technology, SE-171 21 Stockholm, Sweden;

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http://dx.doi.org/10.1074/mcp.M113.035600DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916642PMC
February 2014

Subtyping of gliomas of various WHO grades by the application of immunohistochemistry.

Authors:
Svetlana N Popova Michael Bergqvist Anna Dimberg Per-Henrik Edqvist Simon Ekman Göran Hesselager Fredrik Ponten Anja Smits Linda Sooman Irina Alafuzoff

Histopathology 2014 Feb 5;64(3):365-79. Epub 2013 Nov 5.

Department of Pathology and Cytology, Uppsala University Hospital, Uppsala, Sweden.

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http://dx.doi.org/10.1111/his.12252DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4670475PMC
February 2014

Evidence for a morphologically distinct and functionally robust cell type in the proximal tubules of human kidney.

Authors:
Jennifer Hansson Kjell Hultenby Catharina Cramnert Fredrik Pontén Hannes Jansson David Lindgren Håkan Axelson Martin E Johansson

Hum Pathol 2014 Feb 18;45(2):382-93. Epub 2013 Oct 18.

Department of Laboratory Medicine, Center for Molecular Pathology, Lund University, Skåne University Hospital, Malmö, Jan Waldenströms gata 59, SE-205 02 Malmö, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.humpath.2013.10.003DOI Listing
February 2014

Detection of the human endogenous retrovirus ERV3-encoded Env-protein in human tissues using antibody-based proteomics.

Authors:
Chen Fei Christina Atterby Per-Henrik Edqvist Fredrik Pontén Wei Wei Zhang Erik Larsson Frank P Ryan

J R Soc Med 2014 Jan 21;107(1):22-9. Epub 2013 Nov 21.

Third Military Medical University, Chongqing 400300, China.

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http://dx.doi.org/10.1177/0141076813509981DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3883148PMC
January 2014

A systematic analysis of commonly used antibodies in cancer diagnostics.

Authors:
Gabriela Gremel Julia Bergman Dijana Djureinovic Per-Henrik Edqvist Vikas Maindad Bhavana M Bharambe Wasif Ali Z A Khan Sanjay Navani Jacob Elebro Karin Jirström Dan Hellberg Mathias Uhlén Patrick Micke Fredrik Pontén

Histopathology 2014 Jan 5;64(2):293-305. Epub 2013 Nov 5.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1111/his.12255DOI Listing
January 2014

In situ Protein Detection for Companion Diagnostics.

Authors:
Gabriela Gremel Karin Grannas Lesley Ann Sutton Fredrik Pontén Agata Zieba

Front Oncol 2013 Oct 31;3:271. Epub 2013 Oct 31.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University , Uppsala , Sweden.

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http://dx.doi.org/10.3389/fonc.2013.00271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814083PMC
October 2013