Publications by authors named "Frederic Escudié"

14Publications

MIAmS: microsatellite instability detection on NGS amplicons data.

Bioinformatics 2019 Oct 24. Epub 2019 Oct 24.

Department of Pathology, Institut Universitaire du Cancer Toulouse Oncopole, CHU Toulouse, France.

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October 2019

Compacting and correcting Trinity and Oases RNA-Seq assemblies.

PeerJ 2017 16;5:e2988. Epub 2017 Feb 16.

SIGENAE, GenPhySE, Université de Toulouse, INRA, INPT, ENV, Castanet Tolosan, France.

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February 2017

Jflow: a workflow management system for web applications.

Bioinformatics 2016 Feb 10;32(3):456-8. Epub 2015 Oct 10.

Plate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and Plate-forme SIGENAE, INRA, GenPhyse, Castanet-Tolosan Cedex, France.

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February 2016

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.

PLoS One 2015 28;10(8):e0135931. Epub 2015 Aug 28.

INRA, UMR1313, Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France; AgroParisTech, UMR1313, Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France.

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June 2016

Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat.

Chemosphere 2015 Sep 15;135:189-201. Epub 2015 May 15.

Equipe Environnement et Microbiologie, UMR IPREM 5254, IBEAS BP 1155, Université de Pau et des Pays de l'Adour, 64013 Pau cedex, France.

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September 2015

Mitochondrial genomes of the Baltic clam Macoma balthica (Bivalvia: Tellinidae): setting the stage for studying mito-nuclear incompatibilities.

BMC Evol Biol 2014 Dec 21;14:259. Epub 2014 Dec 21.

Littoral, Environnement et Sociétés, UMR 7266 CNRS, Université de La Rochelle, 2 rue Olympe de Gouges, La Rochelle, 17000, France.

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December 2014

jvenn: an interactive Venn diagram viewer.

BMC Bioinformatics 2014 Aug 29;15:293. Epub 2014 Aug 29.

Plate-forme bio-informatique Genotoul/MIA-T, INRA, Borde Rouge, 31326 Castanet-Tolosan, France.

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August 2014

NG6: Integrated next generation sequencing storage and processing environment.

BMC Genomics 2012 Sep 9;13:462. Epub 2012 Sep 9.

Plate-forme bio-informatique Genotoul, INRA, Biométrie et Intelligence Artificielle, BP 52627, 31326, Castanet-Tolosan Cedex, France.

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September 2012