Publications by authors named "Frederic Escudié"

14Publications

Gene alterations in epigenetic modifiers and JAK-STAT signaling are frequent in breast implant-associated ALCL.

Authors:
Camille Laurent Alina Nicolae Cécile Laurent Fabien Le Bras Corinne Haioun Virginie Fataccioli Nadia Amara José Adélaïde Arnaud Guille Jean-Marc Schiano Bruno Tesson Alexandra Traverse-Glehen Marie-Pierre Chenard Lénaïg Mescam Anne Moreau Catherine Chassagne-Clement Joan Somja Frédéric Escudié Marc André Nadine Martin Laetitia Lacroix François Lemonnier Anne-Sophie Hamy Fabien Reyal Marie Bannier Lucie Oberic Nais Prade François-Xavier Frénois Asma Beldi-Ferchiou Marie-Helene Delfau-Larue Reda Bouabdallah Daniel Birnbaum Pierre Brousset Luc Xerri Philippe Gaulard

Blood 2020 01;135(5):360-370

Institut Mondor de Recherche Biomédicale, INSERM U955, Université Paris-Est, Créteil, France.

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January 2020

MIAmS: microsatellite instability detection on NGS amplicons data.

Authors:
Frédéric Escudié Charles Van Goethem David Grand Julie Vendrell Anna Vigier Pierre Brousset Solène M Evrard Jérôme Solassol Janick Selves

Bioinformatics 2019 Oct 24. Epub 2019 Oct 24.

Department of Pathology, Institut Universitaire du Cancer Toulouse Oncopole, CHU Toulouse, France.

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October 2019

Targeted next generation sequencing reveals high mutation frequency of and in high-grade B-cell lymphoma with and and/or rearrangements.

Authors:
Solène M Evrard Sarah Péricart David Grand Nadia Amara Frédéric Escudié Julia Gilhodes Pierre Bories Alexandra Traverse-Glehen Romain Dubois Pierre Brousset Marie Parrens Camille Laurent

Haematologica 2019 04 11;104(4):e154-e157. Epub 2018 Oct 11.

Pathology and Cytology Department, CHU Toulouse, IUCT Oncopole.

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April 2019

EWSR1-PATZ1 gene fusion may define a new glioneuronal tumor entity.

Authors:
Aurore Siegfried Audrey Rousseau Claude-Alain Maurage Sarah Pericart Yvan Nicaise Fréderic Escudie David Grand Alix Delrieu Anne Gomez-Brouchet Sophie Le Guellec Camille Franchet Sergio Boetto Matthieu Vinchon Jean-Christophe Sol Franck-Emmanuel Roux Valérie Rigau Anne-Isabelle Bertozzi David T W Jones Dominique Figarella-Branger Emmanuelle Uro-Coste

Brain Pathol 2019 01 13;29(1):53-62. Epub 2018 Jul 13.

Department of Pathology, IUCT-Oncopole, Toulouse University Hospital, Toulouse, France.

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January 2019

RREB1-MKL2 fusion in biphenotypic "oropharyngeal" sarcoma: New entity or part of the spectrum of biphenotypic sinonasal sarcomas?

Authors:
Aurore Siegfried Claire Romary Fréderic Escudié Yvan Nicaise David Grand Philippe Rochaix Béatrice Barres Sébastien Vergez Christine Chevreau Jean-Michel Coindre Emmanuelle Uro-Coste Sophie Le Guellec

Genes Chromosomes Cancer 2018 04 25;57(4):203-210. Epub 2018 Jan 25.

INSERM U1037, Cancer Research Center of Toulouse (CRCT), Toulouse, France.

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April 2018

FROGS: Find, Rapidly, OTUs with Galaxy Solution.

Authors:
Frédéric Escudié Lucas Auer Maria Bernard Mahendra Mariadassou Laurent Cauquil Katia Vidal Sarah Maman Guillermina Hernandez-Raquet Sylvie Combes Géraldine Pascal

Bioinformatics 2018 04;34(8):1287-1294

GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France.

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April 2018

Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype.

Authors:
Noé Cochetel Frédéric Escudié Sarah Jane Cookson Zhanwu Dai Philippe Vivin Pierre-François Bert Mindy Stephania Muñoz Serge Delrot Christophe Klopp Nathalie Ollat Virginie Lauvergeat

J Exp Bot 2017 07;68(15):4339-4355

EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.

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July 2017

Compacting and correcting Trinity and Oases RNA-Seq assemblies.

Authors:
Cédric Cabau Frédéric Escudié Anis Djari Yann Guiguen Julien Bobe Christophe Klopp

PeerJ 2017 16;5:e2988. Epub 2017 Feb 16.

SIGENAE, GenPhySE, Université de Toulouse, INRA, INPT, ENV, Castanet Tolosan, France.

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February 2017

Jflow: a workflow management system for web applications.

Authors:
Jérôme Mariette Frédéric Escudié Philippe Bardou Ibouniyamine Nabihoudine Céline Noirot Marie-Stéphane Trotard Christine Gaspin Christophe Klopp

Bioinformatics 2016 Feb 10;32(3):456-8. Epub 2015 Oct 10.

Plate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and Plate-forme SIGENAE, INRA, GenPhyse, Castanet-Tolosan Cedex, France.

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February 2016

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.

Authors:
Mekki Boussaha Diane Esquerré Johanna Barbieri Anis Djari Alain Pinton Rabia Letaief Gérald Salin Frédéric Escudié Alain Roulet Sébastien Fritz Franck Samson Cécile Grohs Maria Bernard Christophe Klopp Didier Boichard Dominique Rocha

PLoS One 2015 28;10(8):e0135931. Epub 2015 Aug 28.

INRA, UMR1313, Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France; AgroParisTech, UMR1313, Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France.

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June 2016

Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat.

Authors:
Olivier Pringault Johanne Aube Olivier Bouchez Christophe Klopp Jérome Mariette Frédéric Escudie Pavel Senin Marisol Goni-Urriza

Chemosphere 2015 Sep 15;135:189-201. Epub 2015 May 15.

Equipe Environnement et Microbiologie, UMR IPREM 5254, IBEAS BP 1155, Université de Pau et des Pays de l'Adour, 64013 Pau cedex, France.

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September 2015

Mitochondrial genomes of the Baltic clam Macoma balthica (Bivalvia: Tellinidae): setting the stage for studying mito-nuclear incompatibilities.

Authors:
Alice Saunier Pascale Garcia Vanessa Becquet Nathalie Marsaud Frédéric Escudié Eric Pante

BMC Evol Biol 2014 Dec 21;14:259. Epub 2014 Dec 21.

Littoral, Environnement et Sociétés, UMR 7266 CNRS, Université de La Rochelle, 2 rue Olympe de Gouges, La Rochelle, 17000, France.

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December 2014

jvenn: an interactive Venn diagram viewer.

Authors:
Philippe Bardou Jérôme Mariette Frédéric Escudié Christophe Djemiel Christophe Klopp

BMC Bioinformatics 2014 Aug 29;15:293. Epub 2014 Aug 29.

Plate-forme bio-informatique Genotoul/MIA-T, INRA, Borde Rouge, 31326 Castanet-Tolosan, France.

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August 2014

NG6: Integrated next generation sequencing storage and processing environment.

Authors:
Jérôme Mariette Frédéric Escudié Nicolas Allias Gérald Salin Céline Noirot Sylvain Thomas Christophe Klopp

BMC Genomics 2012 Sep 9;13:462. Epub 2012 Sep 9.

Plate-forme bio-informatique Genotoul, INRA, Biométrie et Intelligence Artificielle, BP 52627, 31326, Castanet-Tolosan Cedex, France.

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September 2012