Francois Balloux

Francois Balloux

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Francois Balloux

Publications by authors named "Francois Balloux"

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Genetic affinities of an eradicated European strain.

Microb Genom 2019 Aug 27. Epub 2019 Aug 27.

Institute of Evolutionary Biology (CSIC-UPF), 08003 Barcelona, Spain.

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http://dx.doi.org/10.1099/mgen.0.000289DOI Listing
August 2019

Co-evolution of sites under immune selection shapes Epstein-Barr Virus population structure.

Mol Biol Evol 2019 Jul 2. Epub 2019 Jul 2.

Division of Infection & Immunity, University College London, London, UK.

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http://dx.doi.org/10.1093/molbev/msz152DOI Listing
July 2019

Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles.

Clin Infect Dis 2019 Jan 26. Epub 2019 Jan 26.

Department of Microbiology, Virology and Infection Control, Great Ormond Street Hospital NHS Foundation Trust, London, UK.

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https://academic.oup.com/cid/advance-article/doi/10.1093/cid
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http://dx.doi.org/10.1093/cid/ciz069DOI Listing
January 2019

From Theory to Practice: Translating Whole-Genome Sequencing (WGS) into the Clinic.

Trends Microbiol 2018 12 4;26(12):1035-1048. Epub 2018 Sep 4.

Infectious Diseases and Environmental Health, Norwegian Institute of Public Health, Lovisenberggata 8, Oslo 0456, Norway.

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http://dx.doi.org/10.1016/j.tim.2018.08.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249990PMC
December 2018

A quantitative-PCR based method to estimate ranavirus viral load following normalisation by reference to an ultraconserved vertebrate target.

J Virol Methods 2017 11 24;249:147-155. Epub 2017 Aug 24.

Institute of Zoology, Zoological Society of London, Regent's Park, London, NW1 4RY, United Kingdom; UCL Genetics Institute, Gower Street, London, WC1E 6BT, United Kingdom.

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http://dx.doi.org/10.1016/j.jviromet.2017.08.016DOI Listing
November 2017

Q&A: What are pathogens, and what have they done to and for us?

BMC Biol 2017 10 19;15(1):91. Epub 2017 Oct 19.

UCL Genetics Institute (UGI), Darwin Building, Gower Street, London, WC1E 6BT, UK.

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http://dx.doi.org/10.1186/s12915-017-0433-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648414PMC
October 2017

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Nature 2016 Oct 21;538(7624):201-206. Epub 2016 Sep 21.

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/nature18964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161557PMC
October 2016

Antimicrobial Resistance in Mycobacterium tuberculosis: The Odd One Out.

Trends Microbiol 2016 08 7;24(8):637-648. Epub 2016 Apr 7.

Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK. Electronic address:

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http://dx.doi.org/10.1016/j.tim.2016.03.007DOI Listing
August 2016

Inferences from tip-calibrated phylogenies: a review and a practical guide.

Mol Ecol 2016 05 20;25(9):1911-24. Epub 2016 Apr 20.

Department of Genetics, Evolution and Environment, UCL Genetics Institute, University College London, Gower Street, London, WC1E 6BT, UK.

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http://dx.doi.org/10.1111/mec.13586DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4949988PMC
May 2016

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Authors:
Maanasa Raghavan Matthias Steinrücken Kelley Harris Stephan Schiffels Simon Rasmussen Michael DeGiorgio Anders Albrechtsen Cristina Valdiosera María C Ávila-Arcos Anna-Sapfo Malaspinas Anders Eriksson Ida Moltke Mait Metspalu Julian R Homburger Jeff Wall Omar E Cornejo J Víctor Moreno-Mayar Thorfinn S Korneliussen Tracey Pierre Morten Rasmussen Paula F Campos Peter de Barros Damgaard Morten E Allentoft John Lindo Ene Metspalu Ricardo Rodríguez-Varela Josefina Mansilla Celeste Henrickson Andaine Seguin-Orlando Helena Malmström Thomas Stafford Suyash S Shringarpure Andrés Moreno-Estrada Monika Karmin Kristiina Tambets Anders Bergström Yali Xue Vera Warmuth Andrew D Friend Joy Singarayer Paul Valdes Francois Balloux Ilán Leboreiro Jose Luis Vera Hector Rangel-Villalobos Davide Pettener Donata Luiselli Loren G Davis Evelyne Heyer Christoph P E Zollikofer Marcia S Ponce de León Colin I Smith Vaughan Grimes Kelly-Anne Pike Michael Deal Benjamin T Fuller Bernardo Arriaza Vivien Standen Maria F Luz Francois Ricaut Niede Guidon Ludmila Osipova Mikhail I Voevoda Olga L Posukh Oleg Balanovsky Maria Lavryashina Yuri Bogunov Elza Khusnutdinova Marina Gubina Elena Balanovska Sardana Fedorova Sergey Litvinov Boris Malyarchuk Miroslava Derenko M J Mosher David Archer Jerome Cybulski Barbara Petzelt Joycelynn Mitchell Rosita Worl Paul J Norman Peter Parham Brian M Kemp Toomas Kivisild Chris Tyler-Smith Manjinder S Sandhu Michael Crawford Richard Villems David Glenn Smith Michael R Waters Ted Goebel John R Johnson Ripan S Malhi Mattias Jakobsson David J Meltzer Andrea Manica Richard Durbin Carlos D Bustamante Yun S Song Rasmus Nielsen Eske Willerslev

Science 2015 Aug 21;349(6250):aab3884. Epub 2015 Jul 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.aab3884DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733658PMC
August 2015

Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain.

Nat Commun 2015 May 11;6:7119. Epub 2015 May 11.

Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK.

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http://dx.doi.org/10.1038/ncomms8119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432642PMC
May 2015

Rates of vaccine evolution show strong effects of latency: implications for varicella zoster virus epidemiology.

Mol Biol Evol 2015 Apr 6;32(4):1020-8. Epub 2015 Jan 6.

Division of Infection and Immunity, MRC Centre for Medical Molecular Virology, UCL, London, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msu406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4379407PMC
April 2015

Collapse of amphibian communities due to an introduced Ranavirus.

Curr Biol 2014 Nov 16;24(21):2586-91. Epub 2014 Oct 16.

Museo Nacional de Ciencias Naturales, CSIC, José Gutiérrez Abascal 2, 28006 Madrid, Spain.

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https://linkinghub.elsevier.com/retrieve/pii/S09609822140114
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http://dx.doi.org/10.1016/j.cub.2014.09.028DOI Listing
November 2014

Improved calibration of the human mitochondrial clock using ancient genomes.

Mol Biol Evol 2014 Oct 5;31(10):2780-92. Epub 2014 Aug 5.

UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, London, United Kingdom

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http://dx.doi.org/10.1093/molbev/msu222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166928PMC
October 2014

Late Pleistocene climate change and the global expansion of anatomically modern humans.

Proc Natl Acad Sci U S A 2012 Oct 17;109(40):16089-94. Epub 2012 Sep 17.

Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, England.

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http://dx.doi.org/10.1073/pnas.1209494109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3479575PMC
October 2012

Signatures of historical demography and pathogen richness on MHC class I genes.

Immunogenetics 2012 Mar 23;64(3):165-75. Epub 2011 Sep 23.

Department of Zoology, University of Cambridge, Downing Street, Cambridge, CB2 3EJ, UK.

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http://link.springer.com/10.1007/s00251-011-0576-y
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http://dx.doi.org/10.1007/s00251-011-0576-yDOI Listing
March 2012

Substitution rates at neutral genes depend on population size under fluctuating demography and overlapping generations.

Evolution 2012 Feb 3;66(2):605-11. Epub 2011 Oct 3.

MRC Centre for Outbreaks, Department of Infectious Disease Epidemiology, Imperial College, St Mary's Campus, Norfolk Place, London W2 1PG, United Kingdom.

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http://doi.wiley.com/10.1111/j.1558-5646.2011.01458.x
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http://dx.doi.org/10.1111/j.1558-5646.2011.01458.xDOI Listing
February 2012

Inclusive fitness theory and eusociality.

Authors:
Patrick Abbot Jun Abe John Alcock Samuel Alizon Joao A C Alpedrinha Malte Andersson Jean-Baptiste Andre Minus van Baalen Francois Balloux Sigal Balshine Nick Barton Leo W Beukeboom Jay M Biernaskie Trine Bilde Gerald Borgia Michael Breed Sam Brown Redouan Bshary Angus Buckling Nancy T Burley Max N Burton-Chellew Michael A Cant Michel Chapuisat Eric L Charnov Tim Clutton-Brock Andrew Cockburn Blaine J Cole Nick Colegrave Leda Cosmides Iain D Couzin Jerry A Coyne Scott Creel Bernard Crespi Robert L Curry Sasha R X Dall Troy Day Janis L Dickinson Lee Alan Dugatkin Claire El Mouden Stephen T Emlen Jay Evans Regis Ferriere Jeremy Field Susanne Foitzik Kevin Foster William A Foster Charles W Fox Juergen Gadau Sylvain Gandon Andy Gardner Michael G Gardner Thomas Getty Michael A D Goodisman Alan Grafen Rick Grosberg Christina M Grozinger Pierre-Henri Gouyon Darryl Gwynne Paul H Harvey Ben J Hatchwell Jürgen Heinze Heikki Helantera Ken R Helms Kim Hill Natalie Jiricny Rufus A Johnstone Alex Kacelnik E Toby Kiers Hanna Kokko Jan Komdeur Judith Korb Daniel Kronauer Rolf Kümmerli Laurent Lehmann Timothy A Linksvayer Sébastien Lion Bruce Lyon James A R Marshall Richard McElreath Yannis Michalakis Richard E Michod Douglas Mock Thibaud Monnin Robert Montgomerie Allen J Moore Ulrich G Mueller Ronald Noë Samir Okasha Pekka Pamilo Geoff A Parker Jes S Pedersen Ido Pen David Pfennig David C Queller Daniel J Rankin Sarah E Reece Hudson K Reeve Max Reuter Gilbert Roberts Simon K A Robson Denis Roze Francois Rousset Olav Rueppell Joel L Sachs Lorenzo Santorelli Paul Schmid-Hempel Michael P Schwarz Tom Scott-Phillips Janet Shellmann-Sherman Paul W Sherman David M Shuker Jeff Smith Joseph C Spagna Beverly Strassmann Andrew V Suarez Liselotte Sundström Michael Taborsky Peter Taylor Graham Thompson John Tooby Neil D Tsutsui Kazuki Tsuji Stefano Turillazzi Francisco Ubeda Edward L Vargo Bernard Voelkl Tom Wenseleers Stuart A West Mary Jane West-Eberhard David F Westneat Diane C Wiernasz Geoff Wild Richard Wrangham Andrew J Young David W Zeh Jeanne A Zeh Andrew Zink

Nature 2011 Mar;471(7339):E1-4; author reply E9-10

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http://dx.doi.org/10.1038/nature09831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836173PMC
March 2011

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations.

BMC Genet 2010 Oct 15;11:94. Epub 2010 Oct 15.

MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, Imperial College Faculty of Medicine, St Mary's Campus, Norfolk Place, London W21PG, UK.

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http://dx.doi.org/10.1186/1471-2156-11-94DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2973851PMC
October 2010

adephylo: new tools for investigating the phylogenetic signal in biological traits.

Bioinformatics 2010 Aug 4;26(15):1907-9. Epub 2010 Jun 4.

Department of Infectious Disease Epidemiology, Imperial College-Faculty of Medicine, MRC Centre for Outbreak Analysis and Modelling, St Marys Campus, Norfolk Place, London, UK.

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http://dx.doi.org/10.1093/bioinformatics/btq292DOI Listing
August 2010

The relative role of drift and selection in shaping the human skull.

Am J Phys Anthropol 2010 Jan;141(1):76-82

Evolutionary Ecology Group, Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK.

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http://dx.doi.org/10.1002/ajpa.21115DOI Listing
January 2010

Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation.

Proc Biol Sci 2009 Oct 8;276(1672):3447-55. Epub 2009 Jul 8.

Department of Infectious Disease Epidemiology, Imperial College Faculty of Medicine, MRC Centre for Outbreak Analysis and Modelling, St Mary's Campus, Norfolk Place, London W2 1PG, UK.

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http://rspb.royalsocietypublishing.org/content/276/1672/3447
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https://www.researchgate.net/publication/261252478_Natural_S
Web Search
http://rspb.royalsocietypublishing.org/cgi/doi/10.1098/rspb.
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http://dx.doi.org/10.1098/rspb.2009.0752DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2817182PMC
October 2009

Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic.

PLoS Curr 2009 Aug 31;1:RRN1026. Epub 2009 Aug 31.

Faculty of Medicine, Imperial College London, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762755PMC
August 2009

Distance from Africa, not climate, explains within-population phenotypic diversity in humans.

Proc Biol Sci 2009 Mar;276(1658):809-14

Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK.

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http://dx.doi.org/10.1098/rspb.2008.1563DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2664379PMC
March 2009

Horizontal versus familial transmission of Helicobacter pylori.

PLoS Pathog 2008 Oct 24;4(10):e1000180. Epub 2008 Oct 24.

Institute of Medical Microbiology and Hospital Epidemiology, Hanover Medical School, Hanover, Germany.

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http://dx.doi.org/10.1371/journal.ppat.1000180DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2563686PMC
October 2008

[Helicobacter pylori, our faithful gastric companion].

Med Sci (Paris) 2007 Aug-Sep;23(8-9):705-6

Department of Genetics, University of Cambridge, Downing Street, Cambridge, UK.

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http://dx.doi.org/10.1051/medsci/20072389705DOI Listing
November 2007

The population genomics of hepatitis B virus.

Mol Ecol 2007 Nov;16(22):4747-58

Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK, and Institute for Animal Health, Ash Road, Pirbright, Surrey GU24 0NF, UK.

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http://dx.doi.org/10.1111/j.1365-294X.2007.03564.xDOI Listing
November 2007

Going the distance: human population genetics in a clinal world.

Trends Genet 2007 Sep 25;23(9):432-9. Epub 2007 Jul 25.

Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1016/j.tig.2007.07.002DOI Listing
September 2007

The effect of ancient population bottlenecks on human phenotypic variation.

Nature 2007 Jul;448(7151):346-8

Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK.

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http://www.nature.com/articles/nature05951
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http://dx.doi.org/10.1038/nature05951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1978547PMC
July 2007

Natural selection on fecundity variance in subdivided populations: kin selection meets bet hedging.

Genetics 2007 May 4;176(1):361-77. Epub 2007 Mar 4.

Department of Genetics, University of Cambridge, CB2 3EH Cambridge, United Kingdom.

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http://dx.doi.org/10.1534/genetics.106.066910DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1893054PMC
May 2007

A geographically explicit genetic model of worldwide human-settlement history.

Am J Hum Genet 2006 Aug 30;79(2):230-7. Epub 2006 May 30.

Theoretical and Molecular Population Genetics Group, Department of Genetics, University of Cambridge, Cambridge, United Kingdom.

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http://linkinghub.elsevier.com/retrieve/pii/S000292970763131
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http://dx.doi.org/10.1086/505436DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1559480PMC
August 2006

Molecular epidemiology of clonal diploids: a quick overview and a short DIY (do it yourself) notice.

Infect Genet Evol 2006 Mar 9;6(2):163-70. Epub 2005 Nov 9.

Génétique et Evolution des Maladies Infectieuses, Equipe Evolution des Systèmes Symbiotiques, UMR2724 CNRS-IRD, BP 64501, 911 Av. Agropolis, 34394 Montpellier Cedex 5, France.

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http://dx.doi.org/10.1016/j.meegid.2005.02.004DOI Listing
March 2006

A novel approach to characterise pathogen candidate genetic polymorphisms involved in clinical outcome.

Infect Genet Evol 2006 Jan;6(1):38-45

Theoretical and Molecular Population Genetics Group, Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1016/j.meegid.2005.01.001DOI Listing
January 2006

Geography is a better determinant of human genetic differentiation than ethnicity.

Hum Genet 2005 Dec 28;118(3-4):366-71. Epub 2005 Sep 28.

Evolutionary Ecology Group, Department of Zoology, University of Cambridge, Downing Street, CB2 3EJ, Cambridge, UK.

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http://dx.doi.org/10.1007/s00439-005-0039-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1805472PMC
December 2005

F-statistics of clonal diploids structured in numerous demes.

Mol Ecol 2005 Aug;14(9):2695-702

Génétique et Evolution des Maladies Infectieuses, Equipe Evolution des Systèmes Symbiotiques, BP 64501, 34394 Montpellier cedex 5, France.

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http://dx.doi.org/10.1111/j.1365-294X.2005.02643.xDOI Listing
August 2005

Pathogen-driven selection and worldwide HLA class I diversity.

Curr Biol 2005 Jun;15(11):1022-7

Theoretical and Molecular Population Genetics Group, Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, United Kingdom.

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http://dx.doi.org/10.1016/j.cub.2005.04.050DOI Listing
June 2005

Evidence for recombination in scorpion mitochondrial DNA (Scorpiones: Buthidae).

Proc Biol Sci 2005 Apr;272(1564):697-704

Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1098/rspb.2004.3017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1602043PMC
April 2005

Tackling the population genetics of clonal and partially clonal organisms.

Trends Ecol Evol 2005 Apr 12;20(4):194-201. Epub 2005 Jan 12.

UMR INRA/AgroCampus de Rennes Biologie des Organismes et des Populations appliquée à la Protection des Plantes (BIO3P) INRA B.P. 35327, 35653 Le Rheu Cedex, France.

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http://dx.doi.org/10.1016/j.tree.2005.01.001DOI Listing
April 2005

Population genetics of complex life-cycle parasites: an illustration with trematodes.

Int J Parasitol 2005 Mar 13;35(3):255-63. Epub 2005 Jan 13.

Theoretical and Molecular Population Genetics Group, Department of Genetics, Cambridge CB2 3EH, England.

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http://dx.doi.org/10.1016/j.ijpara.2004.10.027DOI Listing
March 2005

Geography predicts neutral genetic diversity of human populations.

Curr Biol 2005 Mar;15(5):R159-60

Theoretical and Molecular Population Genetics group, Department of Genetics, University of Cambridge, Downing St., Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1016/j.cub.2005.02.038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1800886PMC
March 2005

Clonal reproduction and linkage disequilibrium in diploids: a simulation study.

Infect Genet Evol 2004 Dec;4(4):345-51

Génétique et Evolution des Maladies Infectieuses, Equipe Evolution des Systèmes Symbiotiques, UMR 2724 CNRS-IRD, BP 64501, 911 Av. Agropolis, 34394 Montpellier Cedex 5, France.

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http://dx.doi.org/10.1016/j.meegid.2004.05.002DOI Listing
December 2004

Heterozygote excess in small populations and the heterozygote-excess effective population size.

Evolution 2004 Sep;58(9):1891-900

Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, United Kingdom.

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September 2004

Random mating with a finite number of matings.

Genetics 2003 Dec;165(4):2313-5

Department of Genetics, University of Cambridge, Cambridge CB2 3EH, United Kingdom.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462883PMC
December 2003

The population genetics of clonal and partially clonal diploids.

Genetics 2003 Aug;164(4):1635-44

I.C.A.P.B., University of Edinburgh, Edinburgh EH9 3JT, Scotland, United Kingdom.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462666PMC
August 2003

Testing for epistasis between deleterious mutations in a parasitoid wasp.

Evolution 2003 Jul;57(7):1698-703

Institute of Cell, Animal and Population Biology, University of Edinburgh, Edinburgh EH9 3JT, United Kingdom.

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July 2003

A female melanin ornament signals offspring fluctuating asymmetry in the barn owl.

Proc Biol Sci 2003 Jan;270(1511):167-71

Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK.

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http://dx.doi.org/10.1098/rspb.2002.2215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1691231PMC
January 2003

The estimation of population differentiation with microsatellite markers.

Mol Ecol 2002 Feb;11(2):155-65

Zoologisches Institut, Universität Bern, CH-3032 Hinterkappelen-Bern, Switzerland.

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http://dx.doi.org/10.1046/j.0962-1083.2001.01436.xDOI Listing
February 2002

BREEDING SYSTEM AND GENETIC VARIANCE IN THE MONOGAMOUS, SEMI-SOCIAL SHREW, CROCIDURA RUSSULA.

Evolution 1998 Aug;52(4):1230-1235

Institut de Zoologie et d'Ecologie Animale, Université de Lausanne, CH-1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1111/j.1558-5646.1998.tb01851.xDOI Listing
August 1998