Francisco M De La Vega

Francisco M De La Vega

UNVERIFIED PROFILE

Are you Francisco M De La Vega?   Register this Author

Register author
Francisco M De La Vega

Francisco M De La Vega

Publications by authors named "Francisco M De La Vega"

Are you Francisco M De La Vega?   Register this Author

51Publications

1297Reads

29Profile Views

Polygenic risk scores: a biased prediction?

Genome Med 2018 12 27;10(1):100. Epub 2018 Dec 27.

Department of Biomedical Data Science, Stanford University School of Medicine, Campus Drive, Stanford, CA, 94305, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13073-018-0610-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6309089PMC
December 2018

Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort.

Lancet Oncol 2018 06 9;19(6):785-798. Epub 2018 May 9.

Department of Pediatric Hematology and Oncology, Heidelberg University Hospital, Heidelberg, Germany; Division of Pediatric Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg, Germany; Hopp Children's Cancer Center at the NCT Heidelberg, Heidelberg, Germany. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S14702045183024
Publisher Site
http://dx.doi.org/10.1016/S1470-2045(18)30242-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5984248PMC
June 2018

A cost-effective statistical method to correct for differential genotype misclassification when performing case-control genetic association.

Hum Hered 2010 3;70(2):102-8. Epub 2010 Jul 3.

Department of Genetics, Rutgers University, Piscataway, N.J., USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1159/000314470DOI Listing
June 2015

Nucleosome regulatory dynamics in response to TGFβ.

Nucleic Acids Res 2014 Jun 25;42(11):6921-34. Epub 2014 Apr 25.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, BMC, Box 815, Uppsala University, SE-75108 Uppsala, Sweden

View Article

Download full-text PDF

Source
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gku326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066760PMC
June 2014

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Authors:
Catherine A Brownstein Alan H Beggs Nils Homer Barry Merriman Timothy W Yu Katherine C Flannery Elizabeth T DeChene Meghan C Towne Sarah K Savage Emily N Price Ingrid A Holm Lovelace J Luquette Elaine Lyon Joseph Majzoub Peter Neupert David McCallie Peter Szolovits Huntington F Willard Nancy J Mendelsohn Renee Temme Richard S Finkel Sabrina W Yum Livija Medne Shamil R Sunyaev Ivan Adzhubey Christopher A Cassa Paul I W de Bakker Hatice Duzkale Piotr Dworzyński William Fairbrother Laurent Francioli Birgit H Funke Monica A Giovanni Robert E Handsaker Kasper Lage Matthew S Lebo Monkol Lek Ignaty Leshchiner Daniel G MacArthur Heather M McLaughlin Michael F Murray Tune H Pers Paz P Polak Soumya Raychaudhuri Heidi L Rehm Rachel Soemedi Nathan O Stitziel Sara Vestecka Jochen Supper Claudia Gugenmus Bernward Klocke Alexander Hahn Max Schubach Mortiz Menzel Saskia Biskup Peter Freisinger Mario Deng Martin Braun Sven Perner Richard J H Smith Janeen L Andorf Jian Huang Kelli Ryckman Val C Sheffield Edwin M Stone Thomas Bair E Ann Black-Ziegelbein Terry A Braun Benjamin Darbro Adam P DeLuca Diana L Kolbe Todd E Scheetz Aiden E Shearer Rama Sompallae Kai Wang Alexander G Bassuk Erik Edens Katherine Mathews Steven A Moore Oleg A Shchelochkov Pamela Trapane Aaron Bossler Colleen A Campbell Jonathan W Heusel Anne Kwitek Tara Maga Karin Panzer Thomas Wassink Douglas Van Daele Hela Azaiez Kevin Booth Nic Meyer Michael M Segal Marc S Williams Gerard Tromp Peter White Donald Corsmeier Sara Fitzgerald-Butt Gail Herman Devon Lamb-Thrush Kim L McBride David Newsom Christopher R Pierson Alexander T Rakowsky Aleš Maver Luca Lovrečić Anja Palandačić Borut Peterlin Ali Torkamani Anna Wedell Mikael Huss Andrey Alexeyenko Jessica M Lindvall Måns Magnusson Daniel Nilsson Henrik Stranneheim Fulya Taylan Christian Gilissen Alexander Hoischen Bregje van Bon Helger Yntema Marcel Nelen Weidong Zhang Jason Sager Lu Zhang Kathryn Blair Deniz Kural Michael Cariaso Greg G Lennon Asif Javed Saloni Agrawal Pauline C Ng Komal S Sandhu Shuba Krishna Vamsi Veeramachaneni Ofer Isakov Eran Halperin Eitan Friedman Noam Shomron Gustavo Glusman Jared C Roach Juan Caballero Hannah C Cox Denise Mauldin Seth A Ament Lee Rowen Daniel R Richards F Anthony San Lucas Manuel L Gonzalez-Garay C Thomas Caskey Yu Bai Ying Huang Fang Fang Yan Zhang Zhengyuan Wang Jorge Barrera Juan M Garcia-Lobo Domingo González-Lamuño Javier Llorca Maria C Rodriguez Ignacio Varela Martin G Reese Francisco M De La Vega Edward Kiruluta Michele Cargill Reece K Hart Jon M Sorenson Gholson J Lyon David A Stevenson Bruce E Bray Barry M Moore Karen Eilbeck Mark Yandell Hongyu Zhao Lin Hou Xiaowei Chen Xiting Yan Mengjie Chen Cong Li Can Yang Murat Gunel Peining Li Yong Kong Austin C Alexander Zayed I Albertyn Kym M Boycott Dennis E Bulman Paul M K Gordon A Micheil Innes Bartha M Knoppers Jacek Majewski Christian R Marshall Jillian S Parboosingh Sarah L Sawyer Mark E Samuels Jeremy Schwartzentruber Isaac S Kohane David M Margulies

Genome Biol 2014 Mar 25;15(3):R53. Epub 2014 Mar 25.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2014-15-3-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073084PMC
March 2014

A new expectation-maximization statistical test for case-control association studies considering rare variants obtained by high-throughput sequencing.

Hum Hered 2011 6;71(2):113-25. Epub 2011 Jul 6.

Department of Genetics, Rutgers University, Piscataway, N.J., USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1159/000325590DOI Listing
January 2012

Genomics for the world.

Nature 2011 Jul 13;475(7355):163-5. Epub 2011 Jul 13.

Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA.

View Article

Download full-text PDF

Source
http://www.nature.com/doifinder/10.1038/475163a
Publisher Site
http://dx.doi.org/10.1038/475163aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708540PMC
July 2011

Analyses of a set of 128 ancestry informative single-nucleotide polymorphisms in a global set of 119 population samples.

Investig Genet 2011 Jan 5;2(1). Epub 2011 Jan 5.

Department of Genetics, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-2223-2-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3025953PMC
January 2011

The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation.

PLoS Genet 2010 Aug 19;6(8):e1001070. Epub 2010 Aug 19.

Department of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1001070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2924316PMC
August 2010

Development of personalized tumor biomarkers using massively parallel sequencing.

Sci Transl Med 2010 Feb;2(20):20ra14

Ludwig Center for Cancer Genetics and Therapeutics and Howard Hughes Medical Institute, Johns Hopkins Kimmel Cancer Center, Baltimore, MD 21231, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/scitranslmed.3000702DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2858564PMC
February 2010

A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG).

Bioinformatics 2009 Nov 24;25(21):2863-4. Epub 2009 Sep 24.

Department of Computer Science, University of Toronto, Toronto, Canada.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btp525DOI Listing
November 2009

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals.

Genome Res 2008 Jul 14;18(7):1020-9. Epub 2008 Apr 14.

Departments of Integrative Biology and Statistics, University of California, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.074187.107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2493391PMC
July 2008

Validation of the performance of a comprehensive genotyping assay panel of single nucleotide polymorphisms in drug metabolism enzyme genes.

Hum Mutat 2008 May;29(5):750-6

Core Genotyping Facility, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, Maryland, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/humu.20703DOI Listing
May 2008

Selecting single-nucleotide polymorphisms for association studies with SNPbrowser software.

Methods Mol Biol 2007 ;376:177-93

Applied Biosystems, Foster City, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-59745-389-9_13DOI Listing
December 2007

A tool for selecting SNPs for association studies based on observed linkage disequilibrium patterns.

Pac Symp Biocomput 2006 :487-98

Applied Biosystems, 850 Lincoln Centre Dr., Foster City, CA 94404, USA.

View Article

Download full-text PDF

Source
January 2007

Mapping genes for common diseases: the case for genetic (LD) maps.

Hum Hered 2004 ;58(1):2-9

Human Genetics, School of Medicine, University of Southampton, Southampton, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1159/000081451DOI Listing
December 2005

Optimal selection of SNP markers for disease association studies.

Hum Hered 2004 ;58(3-4):190-202

Applied Biosystems, Rockville, MD, USA.

View Article

Download full-text PDF

Source
https://www.karger.com/Article/FullText/83546
Publisher Site
http://dx.doi.org/10.1159/000083546DOI Listing
June 2005

Assessment of two flexible and compatible SNP genotyping platforms: TaqMan SNP Genotyping Assays and the SNPlex Genotyping System.

Mutat Res 2005 Jun;573(1-2):111-35

Applied Biosystems, 850 Lincoln Centre Dr., Foster City, CA 94404, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mrfmmm.2005.01.008DOI Listing
June 2005

Patterns of linkage disequilibrium in the MHC region on human chromosome 6p.

Hum Genet 2004 Mar 22;114(4):377-85. Epub 2004 Jan 22.

Abteilung für Allgemeine Innere Medizin, Universitätsklinikum Schleswig-Holstein, Christian-Albrechts-Universität Kiel, 24105 Kiel, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00439-003-1075-5DOI Listing
March 2004

Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity.

Pac Symp Biocomput 2003 :466-77

Applied Biosystems, Bioinformatics R&D, 850 Lincoln Center Drive, Foster City CA 94404, USA.

View Article

Download full-text PDF

Source
August 2003

On the power to detect SNP/phenotype association in candidate quantitative trait loci genomic regions: a simulation study.

Pac Symp Biocomput 2003 :478-89

Department of Ecology and Evolution, University of Chicago, 1101 East 57th Street, Chicago, IL 60637, USA.

View Article

Download full-text PDF

Source
August 2003