Francisco Barona-Gomez

Francisco Barona-Gomez

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Francisco Barona-Gomez

Francisco Barona-Gomez

Publications by authors named "Francisco Barona-Gomez"

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Cycad coralloid roots contain bacterial communities including cyanobacteria and Caulobacter spp that encode niche-specific biosynthetic gene clusters.

Genome Biol Evol 2018 Dec 11. Epub 2018 Dec 11.

Ecological and Evolutionary Genomics Laboratories, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Km 9.6 Libramiento Norte, Carretera Irapuato-León, Irapuato, Guanajuato, México.

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http://dx.doi.org/10.1093/gbe/evy266DOI Listing
December 2018

Genomic insights into human colonization.

Stand Genomic Sci 2018 8;13. Epub 2018 Jan 8.

Evolution of Metabolic Diversity Laboratory, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Irapuato, Mexico.

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http://dx.doi.org/10.1186/s40793-017-0291-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5759803PMC
January 2018

Phylogenomics of 2,4-Diacetylphloroglucinol-Producing Pseudomonas and Novel Antiglycation Endophytes from Piper auritum.

J Nat Prod 2017 07 13;80(7):1955-1963. Epub 2017 Jul 13.

Laboratory of Microbial Secondary Metabolism, Department of Biotechnology, Cinvestav-IPN Mexico City 07360, Mexico.

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http://dx.doi.org/10.1021/acs.jnatprod.6b00823DOI Listing
July 2017

Co-occurrence of analogous enzymes determines evolution of a novel (βα)8-isomerase sub-family after non-conserved mutations in flexible loop.

Biochem J 2016 05 29;473(9):1141-52. Epub 2016 Feb 29.

Evolution of Metabolic Diversity Laboratory, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Irapuato, CP36821, México

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http://dx.doi.org/10.1042/BJ20151271DOI Listing
May 2016

Increasing Metagenomic Resolution of Microbiome Interactions Through Functional Phylogenomics and Bacterial Sub-Communities.

Front Genet 2016 10;7. Epub 2016 Feb 10.

Laboratorio Nacional de Genómica para la Biodiversidad (Langebio), Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (Cinvestav) Irapuato, Mexico.

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http://dx.doi.org/10.3389/fgene.2016.00004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748306PMC
February 2016

Systems Biology Approaches to Understand Natural Products Biosynthesis.

Front Bioeng Biotechnol 2015 9;3:199. Epub 2015 Dec 9.

Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland , Brisbane, QLD , Australia.

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http://dx.doi.org/10.3389/fbioe.2015.00199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4673338PMC
December 2015

Minimum Information about a Biosynthetic Gene cluster.

Authors:
Marnix H Medema Renzo Kottmann Pelin Yilmaz Matthew Cummings John B Biggins Kai Blin Irene de Bruijn Yit Heng Chooi Jan Claesen R Cameron Coates Pablo Cruz-Morales Srikanth Duddela Stephanie Düsterhus Daniel J Edwards David P Fewer Neha Garg Christoph Geiger Juan Pablo Gomez-Escribano Anja Greule Michalis Hadjithomas Anthony S Haines Eric J N Helfrich Matthew L Hillwig Keishi Ishida Adam C Jones Carla S Jones Katrin Jungmann Carsten Kegler Hyun Uk Kim Peter Kötter Daniel Krug Joleen Masschelein Alexey V Melnik Simone M Mantovani Emily A Monroe Marcus Moore Nathan Moss Hans-Wilhelm Nützmann Guohui Pan Amrita Pati Daniel Petras F Jerry Reen Federico Rosconi Zhe Rui Zhenhua Tian Nicholas J Tobias Yuta Tsunematsu Philipp Wiemann Elizabeth Wyckoff Xiaohui Yan Grace Yim Fengan Yu Yunchang Xie Bertrand Aigle Alexander K Apel Carl J Balibar Emily P Balskus Francisco Barona-Gómez Andreas Bechthold Helge B Bode Rainer Borriss Sean F Brady Axel A Brakhage Patrick Caffrey Yi-Qiang Cheng Jon Clardy Russell J Cox René De Mot Stefano Donadio Mohamed S Donia Wilfred A van der Donk Pieter C Dorrestein Sean Doyle Arnold J M Driessen Monika Ehling-Schulz Karl-Dieter Entian Michael A Fischbach Lena Gerwick William H Gerwick Harald Gross Bertolt Gust Christian Hertweck Monica Höfte Susan E Jensen Jianhua Ju Leonard Katz Leonard Kaysser Jonathan L Klassen Nancy P Keller Jan Kormanec Oscar P Kuipers Tomohisa Kuzuyama Nikos C Kyrpides Hyung-Jin Kwon Sylvie Lautru Rob Lavigne Chia Y Lee Bai Linquan Xinyu Liu Wen Liu Andriy Luzhetskyy Taifo Mahmud Yvonne Mast Carmen Méndez Mikko Metsä-Ketelä Jason Micklefield Douglas A Mitchell Bradley S Moore Leonilde M Moreira Rolf Müller Brett A Neilan Markus Nett Jens Nielsen Fergal O'Gara Hideaki Oikawa Anne Osbourn Marcia S Osburne Bohdan Ostash Shelley M Payne Jean-Luc Pernodet Miroslav Petricek Jörn Piel Olivier Ploux Jos M Raaijmakers José A Salas Esther K Schmitt Barry Scott Ryan F Seipke Ben Shen David H Sherman Kaarina Sivonen Michael J Smanski Margherita Sosio Evi Stegmann Roderich D Süssmuth Kapil Tahlan Christopher M Thomas Yi Tang Andrew W Truman Muriel Viaud Jonathan D Walton Christopher T Walsh Tilmann Weber Gilles P van Wezel Barrie Wilkinson Joanne M Willey Wolfgang Wohlleben Gerard D Wright Nadine Ziemert Changsheng Zhang Sergey B Zotchev Rainer Breitling Eriko Takano Frank Oliver Glöckner

Nat Chem Biol 2015 Sep;11(9):625-31

1] Microbial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Bremen, Germany. [2] Jacobs University Bremen gGmbH, Bremen, Germany.

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http://orbit.dtu.dk/files/115504295/Minimum_Information_abou
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http://www.nature.com/doifinder/10.1038/nchembio.1890
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http://dx.doi.org/10.1038/nchembio.1890DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714517PMC
September 2015

Gene duplication and the evolution of moonlighting proteins.

Front Genet 2015 7;6:227. Epub 2015 Jul 7.

Laboratorio Nacional de Genómica para la Biodiversidad (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Irapuato, Mexico.

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http://dx.doi.org/10.3389/fgene.2015.00227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4493404PMC
July 2015

Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome.

BMC Evol Biol 2015 Jun 10;15:107. Epub 2015 Jun 10.

Evolution of Metabolic Diversity, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Km 9.6 Libramiento Norte, Carretera Irapuato - León, CP 36821, Irapuato, México.

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http://dx.doi.org/10.1186/s12862-015-0378-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462073PMC
June 2015

Molecular annotation of ketol-acid reductoisomerases from Streptomyces reveals a novel amino acid biosynthesis interlock mediated by enzyme promiscuity.

Microb Biotechnol 2015 Mar 9;8(2):239-52. Epub 2014 Oct 9.

Evolution of Metabolic Diversity Laboratory, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Km 9.6 Libramiento Norte, Irapuato, Guanajuato, CP36822, México.

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http://dx.doi.org/10.1111/1751-7915.12175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4353338PMC
March 2015

Re-annotation of the sequence > annotation: opportunities for the functional microbiologist.

Microb Biotechnol 2015 Jan;8(1):2-4

Evolution of Metabolic Diversity Laboratory, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Km 9.6 Libramiento Norte, Carretera Irapuato - León, Irapuato, Guanajuato, CP36821, México.

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http://dx.doi.org/10.1111/1751-7915.12242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321354PMC
January 2015

Promiscuous and adaptable enzymes fill "holes" in the tetrahydrofolate pathway in Chlamydia species.

MBio 2014 Jul 8;5(4):e01378-14. Epub 2014 Jul 8.

Department of Microbiology and Immunology, F. Edward Hébert School of Medicine, Uniformed Services University, Bethesda, Maryland, USA

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http://dx.doi.org/10.1128/mBio.01378-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161248PMC
July 2014

Synthetic biology of avermectin for production improvement and structure diversification.

Biotechnol J 2014 Mar 29;9(3):316-25. Epub 2014 Jan 29.

Chinese Academy of Sciences Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, P.R. China.

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http://dx.doi.org/10.1002/biot.201200383DOI Listing
March 2014

Evolution of substrate specificity in a recipient's enzyme following horizontal gene transfer.

Mol Biol Evol 2013 Sep 25;30(9):2024-34. Epub 2013 Jun 25.

Evolution of Metabolic Diversity Laboratory, Laboratorio Nacional de Genómica para la Biodiversidad (Langebio), Cinvestav-IPN, Irapuato, México.

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http://dx.doi.org/10.1093/molbev/mst115DOI Listing
September 2013

Enzyme evolution beyond gene duplication: A model for incorporating horizontal gene transfer.

Mob Genet Elements 2013 Sep 2;3(5):e26439. Epub 2013 Oct 2.

Evolution of Metabolic Diversity Laboratory; Laboratorio Nacional de Genómica para la Biodiversidad (Langebio); Cinvestav-IPN; Irapuato, México.

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http://dx.doi.org/10.4161/mge.26439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827091PMC
September 2013

What can genome-scale metabolic network reconstructions do for prokaryotic systematics?

Antonie Van Leeuwenhoek 2012 Jan 21;101(1):35-43. Epub 2011 Oct 21.

Evolution of Metabolic Diversity Laboratory, Laboratorio Nacional de Genómica para la Biodiversidad (Langebio), CINVESTAV-IPN, Km 9.6 Libramiento Norte, Carretera Irapuato-León, Irapuato, Mexico.

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http://dx.doi.org/10.1007/s10482-011-9655-1DOI Listing
January 2012

First draft genome sequence of a strain from the genus Citricoccus.

J Bacteriol 2011 Nov;193(21):6092-3

Centro de Investigación y Estudios Avanzados, Laboratorio Nacional de Genómica para la Biodiversidad (LANGEBIO), Km. 9.6 Libramiento Norte Carretera Irapuato-León, Apdo. Postal 629, Irapuato 36821, Guanajuato, Mexico.

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http://dx.doi.org/10.1128/JB.06045-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194908PMC
November 2011

Exploring the Structure-Function Loop Adaptability of a (β/α)(8)-Barrel Enzyme through Loop Swapping and Hinge Variability.

J Mol Biol 2011 Aug 27;411(1):143-57. Epub 2011 May 27.

Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Cuernavaca, C.P. 62210, México.

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http://dx.doi.org/10.1016/j.jmb.2011.05.027DOI Listing
August 2011

Multicopy proC in Streptomyces coelicolor A3(2) elicits a transient production of prodiginines, while proC deletion does not yield a proline auxotroph.

J Mol Microbiol Biotechnol 2010 6;19(3):152-8. Epub 2010 Oct 6.

Department of Biological Sciences, University of Warwick, Gibbet Hill Road, Coventry, UK.

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http://dx.doi.org/10.1159/000321502DOI Listing
March 2011

Disruption of the siderophore-binding desE receptor gene in Streptomyces coelicolor A3(2) results in impaired growth in spite of multiple iron-siderophore transport systems.

Microb Biotechnol 2011 Mar 10;4(2):275-85. Epub 2011 Jan 10.

Evolution of Metabolic Diversity Laboratory, Laboratorio Nacional de Genómica para la Biodiversidad (Langebio), CINVESTAV-IPN, Km 9.6 Libramiento Norte, Carretera Irapuato-León, Irapuato, C.P. 36822, México.

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http://dx.doi.org/10.1111/j.1751-7915.2010.00240.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3818867PMC
March 2011

Identification and analysis of residues contained on beta --> alpha loops of the dual-substrate (beta alpha)8 phosphoribosyl isomerase A specific for its phosphoribosyl anthranilate isomerase activity.

Protein Sci 2010 Mar;19(3):535-43

Evolution of Metabolic Diversity Laboratory, Laboratorio Nacional de Genómica para la Biodiversidad (Langebio), CINVESTAV-IPN, Km 9.6 Libramiento Norte, Carretera Irapuato-León, Irapuato, C.P. 36822, México.

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http://dx.doi.org/10.1002/pro.331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2866278PMC
March 2010

A eukaryote-like cardiolipin synthase is present in Streptomyces coelicolor and in most actinobacteria.

J Biol Chem 2009 Jun 13;284(26):17383-90. Epub 2009 May 13.

Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Av. Universidad s/n, Apdo. Postal 565-A, Cuernavaca, Morelos CP62210, Mexico.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M109.006072
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http://dx.doi.org/10.1074/jbc.M109.006072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719378PMC
June 2009

The structure/function relationship of a dual-substrate (betaalpha)8-isomerase.

Biochem Biophys Res Commun 2008 Jan 29;365(1):16-21. Epub 2007 Oct 29.

Department of Biological Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK.

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http://dx.doi.org/10.1016/j.bbrc.2007.10.101DOI Listing
January 2008

A new family of ATP-dependent oligomerization-macrocyclization biocatalysts.

Nat Chem Biol 2007 Oct 19;3(10):652-6. Epub 2007 Aug 19.

Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK.

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http://dx.doi.org/10.1038/nchembio.2007.23DOI Listing
October 2007

Identification of a cluster of genes that directs desferrioxamine biosynthesis in Streptomyces coelicolor M145.

J Am Chem Soc 2004 Dec;126(50):16282-3

Department of Chemistry, University of Warwick, Coventry CV4 7AL, UK.

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http://dx.doi.org/10.1021/ja045774kDOI Listing
December 2004

Expression, purification and preliminary crystallographic analysis of phosphoribosyl isomerase (PriA) from Streptomyces coelicolor.

Acta Crystallogr D Biol Crystallogr 2004 Mar 25;60(Pt 3):534-6. Epub 2004 Feb 25.

Department of Biological Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, England.

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http://scripts.iucr.org/cgi-bin/paper?S0907444903028877
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http://dx.doi.org/10.1107/S0907444903028877DOI Listing
March 2004

Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis.

EMBO Rep 2003 Mar;4(3):296-300

Department of Biological Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK.

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http://embor.embopress.org/cgi/doi/10.1038/sj.embor.embor771
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http://dx.doi.org/10.1038/sj.embor.embor771DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1315899PMC
March 2003