Francesca Cordero

Francesca Cordero

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Francesca Cordero

Francesca Cordero

Publications by authors named "Francesca Cordero"

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44Publications

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SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.

Bioinformatics 2018 03;34(5):871-872

Department of Molecular Biotechnology and Health Sciences, University of Torino, 10124 Turin, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btx674DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030956PMC
March 2018

Dissecting the genomic activity of a transcriptional regulator by the integrative analysis of omics data.

Sci Rep 2017 08 17;7(1):8564. Epub 2017 Aug 17.

Center for Molecular Systems Biology, University of Turin, 10043, Orbassano, Turin, Italy.

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http://dx.doi.org/10.1038/s41598-017-08754-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5561104PMC
August 2017

Erratum to: 'NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology'.

BMC Bioinformatics 2016 Jul 29;17(1):293. Epub 2016 Jul 29.

Department of Computer Science, University of Torino, Torino, I-10149, Italy.

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http://dx.doi.org/10.1186/s12859-016-1050-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965896PMC
July 2016

NETTAB 2014: From high-throughput structural bioinformatics to integrative systems biology.

BMC Bioinformatics 2016 Mar 2;17 Suppl 4:62. Epub 2016 Mar 2.

Department of Computer Science, University of Torino, Torino, I-10149, Italy.

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http://dx.doi.org/10.1186/s12859-016-0907-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4896255PMC
March 2016

A computational analysis of S-(2-succino)cysteine sites in proteins.

Biochim Biophys Acta 2016 Feb 14;1864(2):211-8. Epub 2015 Nov 14.

Dipartimento di Informatica, Università degli Studi di Torino, Turin, Italy.

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http://dx.doi.org/10.1016/j.bbapap.2015.11.003DOI Listing
February 2016

Chimera: a Bioconductor package for secondary analysis of fusion products.

Bioinformatics 2014 Dec 6;30(24):3556-7. Epub 2014 Oct 6.

Department of Computer Sciences, University of Torino, C.so Svizzera 185, 10149 Torino, Department of Molecular Biotechnology and Health Sciences, University of Torino, Via Nizza 52, 10126 Torino, Department of Translational Medicine, University of Piemonte Orientale Avogadro, Novara, Unit of Cancer Epidemiology, Department of Medical Sciences, University of Turin, Turin, Department of Computational and Quantitative Biology, UMR 7238 CNRS - Université Pierre et Marie Curie, Paris, France and Department of Mathematics and Computer Science, University of Udine, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btu662DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253834PMC
December 2014

Genomic lens on neuroglobin transcription.

IUBMB Life 2014 Jan 6;66(1):46-51. Epub 2014 Jan 6.

Center for Molecular Systems Biology, University of Turin, Orbassano, Turin, Italy; Department of Clinical and Biological Sciences, University of Turin, Orbassano, Turin, Italy.

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http://dx.doi.org/10.1002/iub.1235DOI Listing
January 2014

State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

BMC Bioinformatics 2013 22;14 Suppl 7:S2. Epub 2013 Apr 22.

University of Torino, Bioinformatics & Genomics unit, Molecular Biotechnology Center, Via Nizza 52, 10126 Torino, Italy.

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http://dx.doi.org/10.1186/1471-2105-14-S7-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633050PMC
December 2013

State-of-the-art fusion-finder algorithms sensitivity and specificity.

Biomed Res Int 2013 17;2013:340620. Epub 2013 Feb 17.

Department of Molecular Biotechnology and Health Sciences, University of Torino, Via Nizza 52, 10126 Torino, Italy.

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http://www.hindawi.com/journals/bmri/2013/340620/
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http://dx.doi.org/10.1155/2013/340620DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3595110PMC
September 2013

Multi-level model for the investigation of oncoantigen-driven vaccination effect.

BMC Bioinformatics 2013 17;14 Suppl 6:S11. Epub 2013 Apr 17.

Computer Science Department, University of Turin, Corso Svizzera 185, Torino, Italy.

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http://dx.doi.org/10.1186/1471-2105-14-S6-S11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633011PMC
September 2013

Large disclosing the nature of computational tools for the analysis of next generation sequencing data.

Curr Top Med Chem 2012 ;12(12):1320-30

Department of Computer Science, University of Torino, Torino, Italy.

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http://dx.doi.org/10.2174/156802612801319007DOI Listing
May 2013

Restructuring the gene ontology to emphasise regulative pathways and to improve gene similarity queries.

Int J Comput Biol Drug Des 2011 21;4(3):220-38. Epub 2011 Jul 21.

Department of Computer Science, University of Torino, Corso Svizzera 185, 10049, Torino, Italy.

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http://dx.doi.org/10.1504/IJCBDD.2011.041411DOI Listing
November 2011

Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays.

BMC Genomics 2008 Nov 28;9:571. Epub 2008 Nov 28.

Department of Clinical and Biological Sciences, University of Torino, Regione Gonzole 10, Orbassano (TO), 10043, Italy.

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http://dx.doi.org/10.1186/1471-2164-9-571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612032PMC
November 2008

Inflammation and breast cancer. Inflammatory component of mammary carcinogenesis in ErbB2 transgenic mice.

Breast Cancer Res 2007 ;9(4):211

Molecular Biotechnology Center, Department of Clinical and Biological Sciences, Via Nizza 52, 10126 Turin, Italy.

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http://dx.doi.org/10.1186/bcr1745DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206718PMC
March 2008

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.

Bioinformatics 2007 Dec 17;23(24):3406-8. Epub 2007 Sep 17.

CBM (Cluster in Biomedicine) S.c.r.l., AREA Science Park, Basovizza SS 14, km 163,5 34012 Trieste, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btm469DOI Listing
December 2007

Microarray data analysis and mining approaches.

Brief Funct Genomic Proteomic 2007 Dec 22;6(4):265-81. Epub 2008 Jan 22.

Department of Informatics, University of Torino, Italy.

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http://dx.doi.org/10.1093/bfgp/elm034DOI Listing
December 2007

Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer.

BMC Cancer 2006 Jul 26;6:200. Epub 2006 Jul 26.

Department of Clinical and Biological Sciences, University of Torino, Regione Gonzole 10, 10043 Orbassano, Torino, Italy.

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http://dx.doi.org/10.1186/1471-2407-6-200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1557528PMC
July 2006

An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention.

BMC Bioinformatics 2005 Dec 1;6 Suppl 4:S7. Epub 2005 Dec 1.

Dept. of Clinical and Biological Sciences, University of Torino, Az. Ospedaliera S. Luigi, Regione Gonzole 10, I-10043 Orbassano, Italy.

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http://dx.doi.org/10.1186/1471-2105-6-S4-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866378PMC
December 2005