Publications by authors named "Francesc López-Giráldez"

50Publications

Mutations disrupting neuritogenesis genes confer risk for cerebral palsy.

Nat Genet 2020 Oct 28;52(10):1046-1056. Epub 2020 Sep 28.

Pediatric Movement Disorders Program, Division of Pediatric Neurology, Barrow Neurological Institute, Phoenix Children's Hospital, Phoenix, AZ, USA.

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http://dx.doi.org/10.1038/s41588-020-0695-1DOI Listing
October 2020

Congenital Heart Defects Due to Missense Variants.

Circ Genom Precis Med 2020 Jun 12;13(3):e002843. Epub 2020 May 12.

Division of Newborn Medicine, Department of Medicine, Boston Children's Hospital (S.U.M., P.B.A.).

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http://dx.doi.org/10.1161/CIRCGEN.119.002843DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7329268PMC
June 2020

Dermal Adipocyte Lipolysis and Myofibroblast Conversion Are Required for Efficient Skin Repair.

Cell Stem Cell 2020 Jun 16;26(6):880-895.e6. Epub 2020 Apr 16.

Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA; Department of Dermatology, Yale University, New Haven, CT 06511, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2020.03.013DOI Listing
June 2020

The Ulp2 SUMO protease promotes transcription elongation through regulation of histone sumoylation.

EMBO J 2019 08 17;38(16):e102003. Epub 2019 Jul 17.

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.

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http://dx.doi.org/10.15252/embj.2019102003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694223PMC
August 2019

Implication of DNA repair genes in Lynch-like syndrome.

Fam Cancer 2019 07;18(3):331-342

Department of Internal Medicine and Cancer Center, Yale University School of Medicine, P. O. Box 208019, 333 Cedar Street/LMP 1080, New Haven, CT, 06520-8019, USA.

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http://dx.doi.org/10.1007/s10689-019-00128-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561810PMC
July 2019

Distinct adaptive mechanisms drive recovery from aneuploidy caused by loss of the Ulp2 SUMO protease.

Nat Commun 2018 12 21;9(1):5417. Epub 2018 Dec 21.

Department of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT, 06520, USA.

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http://dx.doi.org/10.1038/s41467-018-07836-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303320PMC
December 2018

Targeted protein unfolding uncovers a Golgi-specific transcriptional stress response.

Mol Biol Cell 2018 06 5;29(11):1284-1298. Epub 2018 Apr 5.

Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511.

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http://dx.doi.org/10.1091/mbc.E17-11-0693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5994893PMC
June 2018

Identification of Intrinsic Axon Growth Modulators for Intact CNS Neurons after Injury.

Cell Rep 2017 03;18(11):2687-2701

Department of Neurology, Yale University School of Medicine, New Haven, CT 06520, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.02.058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389739PMC
March 2017

The Epstein-Barr Virus Immunoevasins BCRF1 and BPLF1 Are Expressed by a Mechanism Independent of the Canonical Late Pre-initiation Complex.

PLoS Pathog 2016 Nov 17;12(11):e1006008. Epub 2016 Nov 17.

Department of Pediatrics Yale University School of Medicine, New Haven, Connecticut, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1006008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5113994PMC
November 2016

E2F8 as a Novel Therapeutic Target for Lung Cancer.

J Natl Cancer Inst 2015 Sep 18;107(9). Epub 2015 Jun 18.

Section of Medical Oncology, Department of Internal Medicine (SAP, JWL, RSH, JSK) and Translational Research Program (RSH, JSK), Yale Comprehensive Cancer Center, Departments of Pathology and Medical Oncology (JP), Yale School of Medicine, New Haven, CT; Yale Center for Genome Analysis, Yale University, Orange, CT (FLG).

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http://dx.doi.org/10.1093/jnci/djv151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4651101PMC
September 2015

Gene expression differences among three Neurospora species reveal genes required for sexual reproduction in Neurospora crassa.

PLoS One 2014 20;9(10):e110398. Epub 2014 Oct 20.

Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America; Department of Biostatistics, Yale University, New Haven, Connecticut, United States of America; Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America; Program in Microbiology, Yale University, New Haven, Connecticut, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0110398PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4203796PMC
July 2015

A locus encompassing the Epstein-Barr virus bglf4 kinase regulates expression of genes encoding viral structural proteins.

PLoS Pathog 2014 Aug 28;10(8):e1004307. Epub 2014 Aug 28.

Department of Pediatrics, Yale University School of Medicine, New Haven, Connecticut, United States of America; Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut, United States of America; Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut, United States of America.

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https://dx.plos.org/10.1371/journal.ppat.1004307
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http://dx.doi.org/10.1371/journal.ppat.1004307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148442PMC
August 2014

Phylogenetic and phylogenomic overview of the Polyporales.

Mycologia 2013 Nov-Dec;105(6):1350-73. Epub 2013 Aug 11.

Biology Department, Clark University, 950 Main Street, Worcester, Massachusetts 01610, and CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT, Utrecht, the Netherlands.

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http://www.mycologia.org/content/105/6/1350.full.pdf
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http://www.mycologia.org/cgi/doi/10.3852/13-003
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http://dx.doi.org/10.3852/13-003DOI Listing
January 2014

Evaluating phylogenetic informativeness as a predictor of phylogenetic signal for metazoan, fungal, and mammalian phylogenomic data sets.

Biomed Res Int 2013 26;2013:621604. Epub 2013 Jun 26.

Department of Ecology and Evolutionary Biology, Yale University, 165 Prospect Street, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1155/2013/621604DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708382PMC
February 2014

Molecular chaperone Hsp110 rescues a vesicle transport defect produced by an ALS-associated mutant SOD1 protein in squid axoplasm.

Proc Natl Acad Sci U S A 2013 Apr 18;110(14):5428-33. Epub 2013 Mar 18.

Department of Neurology, and F.M. Kirby Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1073/pnas.1303279110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3619309PMC
April 2013

Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology.

Fungal Genet Biol 2012 Aug 15;49(8):663-73. Epub 2012 Jun 15.

Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1016/j.fgb.2012.05.009DOI Listing
August 2012

Sex-specific gene expression during asexual development of Neurospora crassa.

Fungal Genet Biol 2012 Jul 22;49(7):533-43. Epub 2012 May 22.

Department of Ecology and Evolutionary Biology, Yale University, 165 Prospect Street, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1016/j.fgb.2012.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397379PMC
July 2012

RBE controls microRNA164 expression to effect floral organogenesis.

Development 2012 Jun 9;139(12):2161-9. Epub 2012 May 9.

Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520-8104, USA.

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http://dx.doi.org/10.1242/dev.075069DOI Listing
June 2012

Assessing the role of tandem repeats in shaping the genomic architecture of great apes.

PLoS One 2011 4;6(11):e27239. Epub 2011 Nov 4.

Departament de Biologia Cel·lular, Fisiologia i Immunologia, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0027239PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3208591PMC
March 2012

PhyDesign: an online application for profiling phylogenetic informativeness.

BMC Evol Biol 2011 May 31;11:152. Epub 2011 May 31.

Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA.

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http://dx.doi.org/10.1186/1471-2148-11-152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3124428PMC
May 2011

Multi-targeted priming for genome-wide gene expression assays.

BMC Genomics 2010 Aug 17;11:477. Epub 2010 Aug 17.

Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1186/1471-2164-11-477DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091673PMC
August 2010

Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships.

Syst Biol 2010 Jul 19;59(4):446-57. Epub 2010 May 19.

Department of Ecology and Evolutionary Biology, Yale University,New Haven, CT 06520, USA.

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http://dx.doi.org/10.1093/sysbio/syq025DOI Listing
July 2010

LOX: inferring Level Of eXpression from diverse methods of census sequencing.

Bioinformatics 2010 Aug 10;26(15):1918-9. Epub 2010 Jun 10.

Department of Ecology and Evolutionary Biology and Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2905554PMC
August 2010

Measuring transcription factor-binding site turnover: a maximum likelihood approach using phylogenies.

Genome Biol Evol 2009 May 25;1:85-98. Epub 2009 May 25.

Lehrstuhl für Bioinformatik, Institut für Informatik, Universität Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.1093/gbe/evp010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2817405PMC
May 2009

The phylogenetic informativeness of nucleotide and amino acid sequences for reconstructing the vertebrate tree.

J Mol Evol 2008 Nov 12;67(5):437-47. Epub 2008 Aug 12.

Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1007/s00239-008-9142-0DOI Listing
November 2008

RPS4Y gene family evolution in primates.

BMC Evol Biol 2008 May 13;8:142. Epub 2008 May 13.

Genètica de Conservació Animal, Institut de Recerca i Tecnologia Agroalimentàries, Crta, de Cabrils km2, 08348 Cabrils, Spain.

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http://dx.doi.org/10.1186/1471-2148-8-142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397393PMC
May 2008

High incidence of nonslippage mechanisms generating variability and complexity in eurasian badger microsatellites.

J Hered 2007 Sep-Oct;98(6):620-8. Epub 2007 Aug 28.

The Genètica de la Conservació, Institut de Recerca i Tecnologia Agroalimentàries, Carretera de Cabrils s/n, Cabrils, Spain.

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http://dx.doi.org/10.1093/jhered/esm068DOI Listing
January 2008

Analyses of carnivore microsatellites and their intimate association with tRNA-derived SINEs.

BMC Genomics 2006 Oct 23;7:269. Epub 2006 Oct 23.

Genètica de la Conservació, Institut de Recerca i Tecnologia Agroalimentàries, Ctra, de Cabrils Km 2, 08348 Cabrils (Barcelona), Spain.

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http://dx.doi.org/10.1186/1471-2164-7-269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1634856PMC
October 2006

Phylogenetic inference and comparative evolution of a complex microsatellite and its flanking regions in carnivores.

Genet Res 2005 Jun;85(3):223-33

Genètica de la Conservació, Institut de Recerca i Tecnologia Agroalimentàries, Centre de Cabrils, Ctra. de Cabrils s/n, 08348 Cabrils (Barcelona), Spain.

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http://dx.doi.org/10.1017/S0016672305007512DOI Listing
June 2005