Fiona S L Brinkman

Fiona S L Brinkman

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Fiona S L Brinkman

Publications by authors named "Fiona S L Brinkman"

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Disruption of the Gut Microbiota With Antibiotics Exacerbates Acute Vascular Rejection.

Transplantation 2018 07;102(7):1085-1095

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.

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http://dx.doi.org/10.1097/TP.0000000000002169DOI Listing
July 2018

Improved genomic island predictions with IslandPath-DIMOB.

Bioinformatics 2018 07;34(13):2161-2167

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, Canada.

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http://dx.doi.org/10.1093/bioinformatics/bty095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6022643PMC
July 2018

Microbial genomic island discovery, visualization and analysis.

Brief Bioinform 2018 Jun 3. Epub 2018 Jun 3.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.

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http://dx.doi.org/10.1093/bib/bby042DOI Listing
June 2018

High-throughput detection of RNA processing in bacteria.

BMC Genomics 2018 03 27;19(1):223. Epub 2018 Mar 27.

Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.

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http://dx.doi.org/10.1186/s12864-018-4538-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870498PMC
March 2018

Characterization of Species from Watersheds in British Columbia, Canada.

mSphere 2017 Jul-Aug;2(4). Epub 2017 Aug 2.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.

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http://dx.doi.org/10.1128/mSphere.00246-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541159PMC
August 2017

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.

Nucleic Acids Res 2017 07;45(W1):W30-W35

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.

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http://dx.doi.org/10.1093/nar/gkx343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570257PMC
July 2017

Time course of hepatic gene expression and plasma vitellogenin protein concentrations in estrone-exposed juvenile rainbow trout (Oncorhynchus mykiss).

Comp Biochem Physiol Part D Genomics Proteomics 2016 09 26;19:112-119. Epub 2016 Feb 26.

Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia V5A 1S6, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.cbd.2016.02.002DOI Listing
September 2016

Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database.

Nucleic Acids Res 2016 Jan 17;44(D1):D646-53. Epub 2015 Nov 17.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Greater Vancouver, BC V5A 1S6, Canada

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http://dx.doi.org/10.1093/nar/gkv1227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702867PMC
January 2016

PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures.

Nucleic Acids Res 2016 Jan 23;44(D1):D663-8. Epub 2015 Nov 23.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada

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http://dx.doi.org/10.1093/nar/gkv1271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702898PMC
January 2016

CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization.

Database (Oxford) 2015 7;2015:bav041. Epub 2015 May 7.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada, EMBL Australia Group, South Australian Health and Medical Research Institute, Adelaide, SA 5000, Australia and School of Medicine, Flinders University, Bedford Park, SA 5042, Australia Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada, EMBL Australia Group, South Australian Health and Medical Research Institute, Adelaide, SA 5000, Australia and School of Medicine, Flinders University, Bedford Park, SA 5042, Australia

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http://dx.doi.org/10.1093/database/bav041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4423409PMC
December 2015

Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.

BMC Bioinformatics 2015 Nov 4;16:363. Epub 2015 Nov 4.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.

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http://dx.doi.org/10.1186/s12859-015-0788-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4634789PMC
November 2015

GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications.

Bioinformatics 2015 Oct 20;31(20):3348-9. Epub 2015 Jun 20.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6 and.

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http://dx.doi.org/10.1093/bioinformatics/btv376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4595901PMC
October 2015

Mining the Pseudomonas genome.

Methods Mol Biol 2014 ;1149:417-32

Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, Canada, V5A 1S6.

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http://dx.doi.org/10.1007/978-1-4939-0473-0_33DOI Listing
March 2015

Opinion: Conservation and stewardship of the human microbiome.

Proc Natl Acad Sci U S A 2014 Oct;111(40):14312-3

Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada B3R 4R2

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http://dx.doi.org/10.1073/pnas.1413200111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4210041PMC
October 2014

Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures.

PeerJ 2013 Dec 19;1:e229. Epub 2013 Dec 19.

Animal & Bioscience Research Department, AGRIC, Teagasc , Grange, Dunsany, Co. Meath , Ireland.

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http://dx.doi.org/10.7717/peerj.229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3883547PMC
December 2013

IslandViewer update: Improved genomic island discovery and visualization.

Nucleic Acids Res 2013 Jul 15;41(Web Server issue):W129-32. Epub 2013 May 15.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.

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http://dx.doi.org/10.1093/nar/gkt394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692065PMC
July 2013

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.

Nucleic Acids Res 2013 Jan 24;41(Database issue):D1228-33. Epub 2012 Nov 24.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada.

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http://dx.doi.org/10.1093/nar/gks1147DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531080PMC
January 2013

OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D366-76. Epub 2012 Nov 29.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.

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http://dx.doi.org/10.1093/nar/gks1241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531125PMC
January 2013

Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence.

Int J Antimicrob Agents 2012 Sep 20;40(3):246-51. Epub 2012 Jul 20.

Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.

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http://dx.doi.org/10.1016/j.ijantimicag.2012.05.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5511546PMC
September 2012

MicrobeDB: a locally maintainable database of microbial genomic sequences.

Bioinformatics 2012 Jul 9;28(14):1947-8. Epub 2012 May 9.

Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.

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http://dx.doi.org/10.1093/bioinformatics/bts273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3389766PMC
July 2012

The proportional lack of archaeal pathogens: Do viruses/phages hold the key?

Bioessays 2011 Apr 15;33(4):248-54. Epub 2011 Feb 15.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.

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http://dx.doi.org/10.1002/bies.201000091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3504072PMC
April 2011

Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes.

Nucleic Acids Res 2011 Jan 6;39(Database issue):D596-600. Epub 2010 Oct 6.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq869DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013766PMC
January 2011

PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea.

Nucleic Acids Res 2011 Jan 10;39(Database issue):D241-4. Epub 2010 Nov 10.

Department of Molecular Biology & Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq1093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013690PMC
January 2011

Detecting genomic islands using bioinformatics approaches.

Nat Rev Microbiol 2010 05;8(5):373-82

UC Davis Genome Center, University of California, Davis, One Shields Avenue, Davis, California 95616, USA.

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http://dx.doi.org/10.1038/nrmicro2350DOI Listing
May 2010

G-protein-coupled receptor independent, immunomodulatory properties of chemokine CXCL9.

Cell Immunol 2010 3;261(2):105-13. Epub 2009 Dec 3.

Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1016/j.cellimm.2009.11.007DOI Listing
March 2010

Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system.

PLoS Genet 2010 Mar 12;6(3):e1000875. Epub 2010 Mar 12.

Michael G. DeGroote Institute for Infectious Disease Research and the Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Canada.

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http://dx.plos.org/10.1371/journal.pgen.1000875
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http://dx.doi.org/10.1371/journal.pgen.1000875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2837388PMC
March 2010

The association of virulence factors with genomic islands.

PLoS One 2009 Dec 1;4(12):e8094. Epub 2009 Dec 1.

Department of Molecular Biology, Simon Fraser University, Burnaby, British Columbia, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008094PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779486PMC
December 2009

Enabling a systems biology approach to immunology: focus on innate immunity.

Trends Immunol 2009 Jun 8;30(6):249-62. Epub 2009 May 8.

Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada.

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http://dx.doi.org/10.1016/j.it.2009.03.009DOI Listing
June 2009

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

Bioinformatic detection of horizontally transferred DNA in bacterial genomes.

F1000 Biol Rep 2009 Mar 24;1:25. Epub 2009 Mar 24.

Department of Molecular Biology and Biochemistry, Simon Fraser University Burnaby, BC Canada V5A 1S6.

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http://dx.doi.org/10.3410/B1-25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920674PMC
March 2009

IslandViewer: an integrated interface for computational identification and visualization of genomic islands.

Bioinformatics 2009 Mar 16;25(5):664-5. Epub 2009 Jan 16.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btp030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647836PMC
March 2009

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.

Nucleic Acids Res 2009 Jan 31;37(Database issue):D483-8. Epub 2008 Oct 31.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.

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http://dx.doi.org/10.1093/nar/gkn861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686508PMC
January 2009

The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.

Bioinformatics 2008 Dec 7;24(23):2803-4. Epub 2008 Oct 7.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6.

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http://dx.doi.org/10.1093/bioinformatics/btn524DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639269PMC
December 2008

Evaluation of genomic island predictors using a comparative genomics approach.

BMC Bioinformatics 2008 Aug 5;9:329. Epub 2008 Aug 5.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.

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http://dx.doi.org/10.1186/1471-2105-9-329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2518932PMC
August 2008

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

Trends Biotechnol 2008 Apr 21;26(4):190-200. Epub 2008 Feb 21.

Molecular Biology and Bioinformatics Unit, Department of Biology, University of Padua, Padua, Italy.

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http://dx.doi.org/10.1016/j.tibtech.2007.12.006DOI Listing
April 2008

Methods for predicting bacterial protein subcellular localization.

Nat Rev Microbiol 2006 Oct 11;4(10):741-51. Epub 2006 Sep 11.

Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, British Columbia, V6T 1Z4 Canada.

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http://www.nature.com/articles/nrmicro1494
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http://dx.doi.org/10.1038/nrmicro1494DOI Listing
October 2006

Contribution of the PhoP-PhoQ and PmrA-PmrB two-component regulatory systems to Mg2+-induced gene regulation in Pseudomonas aeruginosa.

J Bacteriol 2006 Jun;188(11):3995-4006

Department of Microbiology and Immunology and Centre for Microbial Diseases and Immunity Research, University of British Columbia, 232-2259 Lower Mall, Vancouver, BC, Canada V6T 1Z4.

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http://dx.doi.org/10.1128/JB.00053-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1482896PMC
June 2006

Improving the specificity of high-throughput ortholog prediction.

BMC Bioinformatics 2006 May 28;7:270. Epub 2006 May 28.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-7-270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1524997PMC
May 2006

Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37.

J Immunol 2006 Feb;176(4):2455-64

Centre for Microbial Diseases and Immunity Research, Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada.

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http://dx.doi.org/10.4049/jimmunol.176.4.2455DOI Listing
February 2006

Evidence of a large novel gene pool associated with prokaryotic genomic islands.

PLoS Genet 2005 Nov 18;1(5):e62. Epub 2005 Nov 18.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.

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http://dx.doi.org/10.1371/journal.pgen.0010062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1285063PMC
November 2005

Molecular analyses of disease pathogenesis: application of bovine microarrays.

Vet Immunol Immunopathol 2005 May;105(3-4):277-87

Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, Sask., Canada S7N 5E3.

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http://dx.doi.org/10.1016/j.vetimm.2005.02.015DOI Listing
May 2005

Phylogeny of Na+/Ca2+ exchanger (NCX) genes from genomic data identifies new gene duplications and a new family member in fish species.

Physiol Genomics 2005 Apr 1;21(2):161-73. Epub 2005 Mar 1.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, Canada.

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http://dx.doi.org/10.1152/physiolgenomics.00286.2004DOI Listing
April 2005

PSORTdb: a protein subcellular localization database for bacteria.

Nucleic Acids Res 2005 Jan;33(Database issue):D164-8

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gki027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC539981PMC
January 2005

Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.

Nucleic Acids Res 2005 Jan;33(Database issue):D338-43

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, B.C., Canada, V5A 1S6.

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http://dx.doi.org/10.1093/nar/gki047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540001PMC
January 2005

ArrayPipe: a flexible processing pipeline for microarray data.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W457-9

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.

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http://dx.doi.org/10.1093/nar/gkh446DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441584PMC
July 2004

ProbeLynx: a tool for updating the association of microarray probes to genes.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W471-4

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.

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http://dx.doi.org/10.1093/nar/gkh452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441590PMC
July 2004

Aminoglycoside efflux in Pseudomonas aeruginosa: involvement of novel outer membrane proteins.

Antimicrob Agents Chemother 2003 Mar;47(3):1101-11

Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada V6T 1Z3.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC149301PMC
http://dx.doi.org/10.1128/aac.47.3.1101-1111.2003DOI Listing
March 2003

IslandPath: aiding detection of genomic islands in prokaryotes.

Bioinformatics 2003 Feb;19(3):418-20

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6.

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http://bioinformatics.oxfordjournals.org/content/19/3/418.fu
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http://dx.doi.org/10.1093/bioinformatics/btg004DOI Listing
February 2003

Function of pseudomonas porins in uptake and efflux.

Annu Rev Microbiol 2002 30;56:17-38. Epub 2002 Jan 30.

Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada V6T 1Z3.

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http://dx.doi.org/10.1146/annurev.micro.56.012302.160310DOI Listing
January 2003