Finn Cilius Nielsen

Finn Cilius Nielsen

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Finn Cilius Nielsen

Publications by authors named "Finn Cilius Nielsen"

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Plasma total cell-free DNA is a prognostic biomarker of overall survival in metastatic solid tumour patients.

Br J Cancer 2019 Jul 12;121(2):125-130. Epub 2019 Jun 12.

The Phase I Unit, Department of Oncology, Copenhagen University, Rigshospitalet, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41416-019-0491-9DOI Listing
July 2019

Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data.

BMC Bioinformatics 2019 Jul 8;20(1):379. Epub 2019 Jul 8.

Centre for Genomic Medicine Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s12859-019-2952-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615267PMC
July 2019

Whole genome sequencing of breast cancer.

APMIS 2019 May 28;127(5):303-315. Epub 2019 Jan 28.

Centre for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.

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http://doi.wiley.com/10.1111/apm.12920
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http://dx.doi.org/10.1111/apm.12920DOI Listing
May 2019

[Genomic medicine].

Ugeskr Laeger 2019 Apr;181(7A)

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April 2019

Shared heritability and functional enrichment across six solid cancers.

Authors:
Xia Jiang Hilary K Finucane Fredrick R Schumacher Stephanie L Schmit Jonathan P Tyrer Younghun Han Kyriaki Michailidou Corina Lesseur Karoline B Kuchenbaecker Joe Dennis David V Conti Graham Casey Mia M Gaudet Jeroen R Huyghe Demetrius Albanes Melinda C Aldrich Angeline S Andrew Irene L Andrulis Hoda Anton-Culver Antonis C Antoniou Natalia N Antonenkova Susanne M Arnold Kristan J Aronson Banu K Arun Elisa V Bandera Rosa B Barkardottir Daniel R Barnes Jyotsna Batra Matthias W Beckmann Javier Benitez Sara Benlloch Andrew Berchuck Sonja I Berndt Heike Bickeböller Stephanie A Bien Carl Blomqvist Stefania Boccia Natalia V Bogdanova Stig E Bojesen Manjeet K Bolla Hiltrud Brauch Hermann Brenner James D Brenton Mark N Brook Joan Brunet Hans Brunnström Daniel D Buchanan Barbara Burwinkel Ralf Butzow Gabriella Cadoni Trinidad Caldés Maria A Caligo Ian Campbell Peter T Campbell Géraldine Cancel-Tassin Lisa Cannon-Albright Daniele Campa Neil Caporaso André L Carvalho Andrew T Chan Jenny Chang-Claude Stephen J Chanock Chu Chen David C Christiani Kathleen B M Claes Frank Claessens Judith Clements J Margriet Collée Marcia Cruz Correa Fergus J Couch Angela Cox Julie M Cunningham Cezary Cybulski Kamila Czene Mary B Daly Anna deFazio Peter Devilee Orland Diez Manuela Gago-Dominguez Jenny L Donovan Thilo Dörk Eric J Duell Alison M Dunning Miriam Dwek Diana M Eccles Christopher K Edlund Digna R Velez Edwards Carolina Ellberg D Gareth Evans Peter A Fasching Robert L Ferris Triantafillos Liloglou Jane C Figueiredo Olivia Fletcher Renée T Fortner Florentia Fostira Silvia Franceschi Eitan Friedman Steven J Gallinger Patricia A Ganz Judy Garber José A García-Sáenz Simon A Gayther Graham G Giles Andrew K Godwin Mark S Goldberg David E Goldgar Ellen L Goode Marc T Goodman Gary Goodman Kjell Grankvist Mark H Greene Henrik Gronberg Jacek Gronwald Pascal Guénel Niclas Håkansson Per Hall Ute Hamann Freddie C Hamdy Robert J Hamilton Jochen Hampe Aage Haugen Florian Heitz Rolando Herrero Peter Hillemanns Michael Hoffmeister Estrid Høgdall Yun-Chul Hong John L Hopper Richard Houlston Peter J Hulick David J Hunter David G Huntsman Gregory Idos Evgeny N Imyanitov Sue Ann Ingles Claudine Isaacs Anna Jakubowska Paul James Mark A Jenkins Mattias Johansson Mikael Johansson Esther M John Amit D Joshi Radka Kaneva Beth Y Karlan Linda E Kelemen Tabea Kühl Kay-Tee Khaw Elza Khusnutdinova Adam S Kibel Lambertus A Kiemeney Jeri Kim Susanne K Kjaer Julia A Knight Manolis Kogevinas Zsofia Kote-Jarai Stella Koutros Vessela N Kristensen Jolanta Kupryjanczyk Martin Lacko Stephan Lam Diether Lambrechts Maria Teresa Landi Philip Lazarus Nhu D Le Eunjung Lee Flavio Lejbkowicz Heinz-Josef Lenz Goska Leslie Davor Lessel Jenny Lester Douglas A Levine Li Li Christopher I Li Annika Lindblom Noralane M Lindor Geoffrey Liu Fotios Loupakis Jan Lubiński Lovise Maehle Christiane Maier Arto Mannermaa Loic Le Marchand Sara Margolin Taymaa May Lesley McGuffog Alfons Meindl Pooja Middha Austin Miller Roger L Milne Robert J MacInnis Francesmary Modugno Marco Montagna Victor Moreno Kirsten B Moysich Lorelei Mucci Kenneth Muir Anna Marie Mulligan Katherine L Nathanson David E Neal Andrew R Ness Susan L Neuhausen Heli Nevanlinna Polly A Newcomb Lisa F Newcomb Finn Cilius Nielsen Liene Nikitina-Zake Børge G Nordestgaard Robert L Nussbaum Kenneth Offit Edith Olah Ali Amin Al Olama Olufunmilayo I Olopade Andrew F Olshan Håkan Olsson Ana Osorio Hardev Pandha Jong Y Park Nora Pashayan Michael T Parsons Tanja Pejovic Kathryn L Penney Wilbert H M Peters Catherine M Phelan Amanda I Phipps Dijana Plaseska-Karanfilska Miranda Pring Darya Prokofyeva Paolo Radice Kari Stefansson Susan J Ramus Leon Raskin Gad Rennert Hedy S Rennert Elizabeth J van Rensburg Marjorie J Riggan Harvey A Risch Angela Risch Monique J Roobol Barry S Rosenstein Mary Anne Rossing Kim De Ruyck Emmanouil Saloustros Dale P Sandler Elinor J Sawyer Matthew B Schabath Johanna Schleutker Marjanka K Schmidt V Wendy Setiawan Hongbing Shen Erin M Siegel Weiva Sieh Christian F Singer Martha L Slattery Karina Dalsgaard Sorensen Melissa C Southey Amanda B Spurdle Janet L Stanford Victoria L Stevens Sebastian Stintzing Jennifer Stone Karin Sundfeldt Rebecca Sutphen Anthony J Swerdlow Eloiza H Tajara Catherine M Tangen Adonina Tardon Jack A Taylor M Dawn Teare Manuel R Teixeira Mary Beth Terry Kathryn L Terry Stephen N Thibodeau Mads Thomassen Line Bjørge Marc Tischkowitz Amanda E Toland Diana Torres Paul A Townsend Ruth C Travis Nadine Tung Shelley S Tworoger Cornelia M Ulrich Nawaid Usmani Celine M Vachon Els Van Nieuwenhuysen Ana Vega Miguel Elías Aguado-Barrera Qin Wang Penelope M Webb Clarice R Weinberg Stephanie Weinstein Mark C Weissler Jeffrey N Weitzel Catharine M L West Emily White Alice S Whittemore H-Erich Wichmann Fredrik Wiklund Robert Winqvist Alicja Wolk Penella Woll Michael Woods Anna H Wu Xifeng Wu Drakoulis Yannoukakos Wei Zheng Shanbeh Zienolddiny Argyrios Ziogas Kristin K Zorn Jacqueline M Lane Richa Saxena Duncan Thomas Rayjean J Hung Brenda Diergaarde James McKay Ulrike Peters Li Hsu Montserrat García-Closas Rosalind A Eeles Georgia Chenevix-Trench Paul J Brennan Christopher A Haiman Jacques Simard Douglas F Easton Stephen B Gruber Paul D P Pharoah Alkes L Price Bogdan Pasaniuc Christopher I Amos Peter Kraft Sara Lindström

Nat Commun 2019 01 25;10(1):431. Epub 2019 Jan 25.

Public Health Sciences Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave. N., Seattle, WA, 98109-1024, USA.

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http://dx.doi.org/10.1038/s41467-018-08054-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347624PMC
January 2019

Using microarray-based subtyping methods for breast cancer in the era of high-throughput RNA sequencing.

Mol Oncol 2018 12 29;12(12):2136-2146. Epub 2018 Oct 29.

Department of Bio and Health Informatics, Technical University of Denmark, Kemitorvet, Kongens Lyngby, Denmark.

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http://doi.wiley.com/10.1002/1878-0261.12389
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http://dx.doi.org/10.1002/1878-0261.12389DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6275246PMC
December 2018

MicroRNA-based classifiers for diagnosis of oral cavity squamous cell carcinoma in tissue and plasma.

Oral Oncol 2018 Aug 12;83:46-52. Epub 2018 Jun 12.

Department of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.oraloncology.2018.05.020DOI Listing
August 2018

Deep sequencing of human papillomavirus positive loco-regionally advanced oropharyngeal squamous cell carcinomas reveals novel mutational signature.

BMC Cancer 2018 Jun 7;18(1):640. Epub 2018 Jun 7.

Department of Otorhinolaryngology - Head and Neck Surgery and Audiology, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s12885-018-4567-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992702PMC
June 2018

Mutational spectrum in a worldwide study of 29,700 families with BRCA1 or BRCA2 mutations.

Authors:
Timothy R Rebbeck Tara M Friebel Eitan Friedman Ute Hamann Dezheng Huo Ava Kwong Edith Olah Olufunmilayo I Olopade Angela R Solano Soo-Hwang Teo Mads Thomassen Jeffrey N Weitzel T L Chan Fergus J Couch David E Goldgar Torben A Kruse Edenir Inêz Palmero Sue Kyung Park Diana Torres Elizabeth J van Rensburg Lesley McGuffog Michael T Parsons Goska Leslie Cora M Aalfs Julio Abugattas Julian Adlard Simona Agata Kristiina Aittomäki Lesley Andrews Irene L Andrulis Adalgeir Arason Norbert Arnold Banu K Arun Ella Asseryanis Leo Auerbach Jacopo Azzollini Judith Balmaña Monica Barile Rosa B Barkardottir Daniel Barrowdale Javier Benitez Andreas Berger Raanan Berger Amie M Blanco Kathleen R Blazer Marinus J Blok Valérie Bonadona Bernardo Bonanni Angela R Bradbury Carole Brewer Bruno Buecher Saundra S Buys Trinidad Caldes Almuth Caliebe Maria A Caligo Ian Campbell Sandrine M Caputo Jocelyne Chiquette Wendy K Chung Kathleen B M Claes J Margriet Collée Jackie Cook Rosemarie Davidson Miguel de la Hoya Kim De Leeneer Antoine de Pauw Capucine Delnatte Orland Diez Yuan Chun Ding Nina Ditsch Susan M Domchek Cecilia M Dorfling Carolina Velazquez Bernd Dworniczak Jacqueline Eason Douglas F Easton Ros Eeles Hans Ehrencrona Bent Ejlertsen Christoph Engel Stefanie Engert D Gareth Evans Laurence Faivre Lidia Feliubadaló Sandra Fert Ferrer Lenka Foretova Jeffrey Fowler Debra Frost Henrique C R Galvão Patricia A Ganz Judy Garber Marion Gauthier-Villars Andrea Gehrig Anne-Marie Gerdes Paul Gesta Giuseppe Giannini Sophie Giraud Gord Glendon Andrew K Godwin Mark H Greene Jacek Gronwald Angelica Gutierrez-Barrera Eric Hahnen Jan Hauke Alex Henderson Julia Hentschel Frans B L Hogervorst Ellen Honisch Evgeny N Imyanitov Claudine Isaacs Louise Izatt Angel Izquierdo Anna Jakubowska Paul James Ramunas Janavicius Uffe Birk Jensen Esther M John Joseph Vijai Katarzyna Kaczmarek Beth Y Karlan Karin Kast KConFab Investigators Sung-Won Kim Irene Konstantopoulou Jacob Korach Yael Laitman Adriana Lasa Christine Lasset Conxi Lázaro Annette Lee Min Hyuk Lee Jenny Lester Fabienne Lesueur Annelie Liljegren Noralane M Lindor Michel Longy Jennifer T Loud Karen H Lu Jan Lubinski Eva Machackova Siranoush Manoukian Véronique Mari Cristina Martínez-Bouzas Zoltan Matrai Noura Mebirouk Hanne E J Meijers-Heijboer Alfons Meindl Arjen R Mensenkamp Ugnius Mickys Austin Miller Marco Montagna Kirsten B Moysich Anna Marie Mulligan Jacob Musinsky Susan L Neuhausen Heli Nevanlinna Joanne Ngeow Huu Phuc Nguyen Dieter Niederacher Henriette Roed Nielsen Finn Cilius Nielsen Robert L Nussbaum Kenneth Offit Anna Öfverholm Kai-Ren Ong Ana Osorio Laura Papi Janos Papp Barbara Pasini Inge Sokilde Pedersen Ana Peixoto Nina Peruga Paolo Peterlongo Esther Pohl Nisha Pradhan Karolina Prajzendanc Fabienne Prieur Pascal Pujol Paolo Radice Susan J Ramus Johanna Rantala Muhammad Usman Rashid Kerstin Rhiem Mark Robson Gustavo C Rodriguez Mark T Rogers Vilius Rudaitis Ane Y Schmidt Rita Katharina Schmutzler Leigha Senter Payal D Shah Priyanka Sharma Lucy E Side Jacques Simard Christian F Singer Anne-Bine Skytte Thomas P Slavin Katie Snape Hagay Sobol Melissa Southey Linda Steele Doris Steinemann Grzegorz Sukiennicki Christian Sutter Csilla I Szabo Yen Y Tan Manuel R Teixeira Mary Beth Terry Alex Teulé Abigail Thomas Darcy L Thull Marc Tischkowitz Silvia Tognazzo Amanda Ewart Toland Sabine Topka Alison H Trainer Nadine Tung Christi J van Asperen Annemieke H van der Hout Lizet E van der Kolk Rob B van der Luijt Mattias Van Heetvelde Liliana Varesco Raymonda Varon-Mateeva Ana Vega Cynthia Villarreal-Garza Anna von Wachenfeldt Lisa Walker Shan Wang-Gohrke Barbara Wappenschmidt Bernhard H F Weber Drakoulis Yannoukakos Sook-Yee Yoon Cristina Zanzottera Jamal Zidan Kristin K Zorn Christina G Hutten Selkirk Peter J Hulick Georgia Chenevix-Trench Amanda B Spurdle Antonis C Antoniou Katherine L Nathanson

Hum Mutat 2018 05 12;39(5):593-620. Epub 2018 Mar 12.

Department of Medicine, Abramson Cancer Center, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, USA.

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http://dx.doi.org/10.1002/humu.23406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5903938PMC
May 2018

Characterization of basal-like subtype in a Danish consecutive primary breast cancer cohort.

Acta Oncol 2018 Jan 22;57(1):51-57. Epub 2017 Nov 22.

a Center for Genomic Medicine , Rigshospitalet, Copenhagen University Hospital , Copenhagen , Denmark.

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http://dx.doi.org/10.1080/0284186X.2017.1398837DOI Listing
January 2018

Correlation between HPV status at T and N sites of oropharyngeal squamous cell carcinomas.

Acta Otolaryngol 2017 Dec 30;137(12):1260-1264. Epub 2017 Jul 30.

a Department of Otorhinolaryngology, Head and Neck Surgery and Audiology , Rigshospitalet, University of Copenhagen , Copenhagen , Denmark.

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http://dx.doi.org/10.1080/00016489.2017.1356934DOI Listing
December 2017

MicroRNA Changes in Cerebrospinal Fluid After Subarachnoid Hemorrhage.

Stroke 2017 09 2;48(9):2391-2398. Epub 2017 Aug 2.

From the Departments of Neuroanaesthesiology (S.B., K.M.) and Neurosurgery (R.R.), The Neuroscience Centre, and Centre for Genomic Medicine (S.B., M.R., F.C.N.), Rigshospitalet, and Department of Anaesthesia, Frederiksberg Hospital (F.P.L.), University of Copenhagen, Denmark.

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http://dx.doi.org/10.1161/STROKEAHA.117.017804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571886PMC
September 2017

Gene expression profiling in patients with polymyalgia rheumatica before and after symptom-abolishing glucocorticoid treatment.

BMC Musculoskelet Disord 2017 Aug 7;18(1):341. Epub 2017 Aug 7.

Institute for Inflammation Research, Department of Rheumatology Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.

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http://bmcmusculoskeletdisord.biomedcentral.com/articles/10.
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http://dx.doi.org/10.1186/s12891-017-1705-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5547529PMC
August 2017

The human endolymphatic sac expresses natriuretic peptides.

Laryngoscope 2017 06 14;127(6):E201-E208. Epub 2017 Mar 14.

Department of Otorhinolaryngology, Head and Neck Surgery, Rigshospitalet, Copenhagen, Denmark.

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http://dx.doi.org/10.1002/lary.26074DOI Listing
June 2017

Neuronal Fibers and Neurotransmitter Receptor Expression in the Human Endolymphatic Sac.

Otol Neurotol 2017 06;38(5):765-773

*Department of Otorhinolaryngology, Head and Neck Surgery †Department of Oral Medicine, Dental School, Panum Institute ‡Center for Genomic Medicine, University of Copenhagen, Rigshospitalet §The Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1097/MAO.0000000000001368DOI Listing
June 2017

Detection of copy number alterations in cell-free tumor DNA from plasma.

BBA Clin 2017 Jun 4;7:120-126. Epub 2017 Apr 4.

Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen Ø, Denmark.

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http://dx.doi.org/10.1016/j.bbacli.2017.03.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390666PMC
June 2017

Gene expression, signal transduction pathways and functional networks associated with growth of sporadic vestibular schwannomas.

J Neurooncol 2017 01 17;131(2):283-292. Epub 2016 Oct 17.

Department of Otolaryngology - Head and Neck Surgery and Audiology, Copenhagen University Hospital Rigshospitalet, Boyesgade 5A, st.th, 1622 KBH V, Copenhagen, Denmark.

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http://dx.doi.org/10.1007/s11060-016-2292-9DOI Listing
January 2017

A new NFIA:RAF1 fusion activating the MAPK pathway in pilocytic astrocytoma.

Cancer Genet 2016 Oct 16;209(10):440-444. Epub 2016 Sep 16.

Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, Blegdamsvej 9, DK-2100 Copenhagen, Denmark. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22107762163023
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http://dx.doi.org/10.1016/j.cancergen.2016.09.002DOI Listing
October 2016

Progression of motor axon dysfunction and ectopic Nav1.8 expression in a mouse model of Charcot-Marie-Tooth disease 1B.

Neurobiol Dis 2016 09 20;93:201-14. Epub 2016 May 20.

Institute of Neuroscience and Pharmacology, University of Copenhagen, Denmark; Department of Clinical Neurophysiology, The Neuroscience Center, Copenhagen University Hospital (Rigshospitalet), Denmark.

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http://dx.doi.org/10.1016/j.nbd.2016.05.014DOI Listing
September 2016

Hereditary breast and ovarian cancer: new genes in confined pathways.

Nat Rev Cancer 2016 09 12;16(9):599-612. Epub 2016 Aug 12.

Biotech Research and Innovation Centre, University of Copenhagen, 2200 Copenhagen, Denmark.

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http://www.nature.com/articles/nrc.2016.72
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http://dx.doi.org/10.1038/nrc.2016.72DOI Listing
September 2016

RNA assemblages orchestrate complex cellular processes.

Bioessays 2016 07 12;38(7):674-81. Epub 2016 May 12.

Department of Biology, Center for Computational and Applied Transcriptomics, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1002/bies.201500175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5084767PMC
July 2016

Gene expression demonstrates an immunological capacity of the human endolymphatic sac.

Laryngoscope 2015 Aug 16;125(8):E269-75. Epub 2015 Mar 16.

Department of Otorhinolaryngology, Head and Neck Surgery, Rigshospitalet (m.n.m., p.c-t.).

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http://dx.doi.org/10.1002/lary.25242DOI Listing
August 2015

Gene expression in the human endolymphatic sac: the solute carrier molecules in endolymphatic fluid homeostasis.

Otol Neurotol 2015 Jun;36(5):915-22

*Department of Oto-Rhino-Laryngology, Head and Neck Surgery, Rigshospitalet, Copenhagen; †Department of Oral Medicine, Dental School, Panum Institute, University of Copenhagen, Copenhagen; ‡Center for Genomic Medicine, University of Copenhagen, Rigshospitalet, Copenhagen; and §Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1097/MAO.0000000000000669DOI Listing
June 2015

Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation.

Genome Biol 2015 Jun 9;16:123. Epub 2015 Jun 9.

Department of Biology, Center for Computational and Applied Transcriptomics, University of Copenhagen, Ole Maaloes Vej 5, 2200, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s13059-015-0687-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477473PMC
June 2015

Detection and quantification of microRNA in cerebral microdialysate.

J Transl Med 2015 May 7;13:149. Epub 2015 May 7.

Department of Neuroanaesthesiology, The Neuroscience Centre, Copenhagen University Hospital, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s12967-015-0505-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4438475PMC
May 2015

Weaning triggers a maturation step of pancreatic β cells.

Dev Cell 2015 Mar 5;32(5):535-45. Epub 2015 Feb 5.

Department of Developmental Biology and Cancer Research, The Institute for Medical Research Israel-Canada, The Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2015.01.002DOI Listing
March 2015

[The genome and cancer treatment].

Ugeskr Laeger 2014 Nov;176(46)

Klinisk Biokemi, Righospitalet, Blegdamsvej 9, 2100 København Ø.

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November 2014

Personalized oncology: genomic screening in phase 1.

APMIS 2014 Aug;122(8):723-33

Department of Oncology, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1111/apm.12293DOI Listing
August 2014

[In Process Citation].

Ugeskr Laeger 2014 Jun;176(11A)

Torben F. Ørntoft, Aarhus, Universitetshospital, Skejby, Brendstrupgardsvej 100, 8200 Aarhus N.

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June 2014

Modeling tissue contamination to improve molecular identification of the primary tumor site of metastases.

Bioinformatics 2014 May 24;30(10):1417-23. Epub 2014 Jan 24.

Department of Mathematical Sciences, University of Copenhagen, Department of Oncology, and Center for Genomic Medicine, Copenhagen University Hospital, Rigshospitalet, 2100 Copenhagen Ø, Denmark.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu044DOI Listing
May 2014

Characterization of miRNA expression in human degenerative lumbar disks.

Connect Tissue Res 2013 15;54(3):197-203. Epub 2013 Apr 15.

Genomic Medicine, Department of Clinical Biochemistry, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.3109/03008207.2013.781594DOI Listing
March 2014

ADAM12 redistributes and activates MMP-14, resulting in gelatin degradation, reduced apoptosis and increased tumor growth.

J Cell Sci 2013 Oct 4;126(Pt 20):4707-20. Epub 2013 Sep 4.

Department of Biomedical Sciences and Biotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1242/jcs.129510DOI Listing
October 2013

Genetic screens to identify pathogenic gene variants in the common cancer predisposition Lynch syndrome.

Proc Natl Acad Sci U S A 2013 Jun 20;110(23):9403-8. Epub 2013 May 20.

Department of Toxicogenetics, Leiden University Medical Center, 2300 RC, Leiden, The Netherlands.

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http://dx.doi.org/10.1073/pnas.1220537110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3677471PMC
June 2013

Integrative analyses reveal novel strategies in HPV11,-16 and -45 early infection.

Sci Rep 2012 17;2:515. Epub 2012 Jul 17.

The Bioinformatics Centre, Department of Biology and Biomedical Research and Innovation Centre, Copenhagen University, Ole Maaloes Vej 5, 2200Copenhagen, Denmark.

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http://dx.doi.org/10.1038/srep00515DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398386PMC
March 2013

A transgenic mouse marking live replicating cells reveals in vivo transcriptional program of proliferation.

Dev Cell 2012 Oct 20;23(4):681-90. Epub 2012 Sep 20.

Department of Cell and Developmental Biology, The Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 91904, Israel.

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http://dx.doi.org/10.1016/j.devcel.2012.08.009DOI Listing
October 2012

Down-regulation of microRNAs controlling tumourigenic factors in follicular thyroid carcinoma.

J Mol Endocrinol 2012 Feb 25;48(1):11-23. Epub 2012 Jan 25.

Center for Genomic Medicine, University of Copenhagen, Rigshospitalet, DK - 2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1530/JME-11-0039DOI Listing
February 2012

Differential expression of cellular microRNAs in HPV 11, -16, and -45 transfected cells.

Biochem Biophys Res Commun 2011 Aug 18;412(1):20-5. Epub 2011 Jul 18.

Institute of Cellular and Molecular Medicine, DNA Tumor Virus Laboratory, University of Copenhagen, Panum Institute, Blegdamsvej 3, 2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1016/j.bbrc.2011.07.011DOI Listing
August 2011

The BTNL2 A allele variant is frequent in Danish patients with sarcoidosis.

Clin Respir J 2011 Apr;5(2):105-11

Department of Rheumatology, Rigshospitalet, Copenhagen University Hospital, Denmark.

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http://dx.doi.org/10.1111/j.1752-699X.2010.00206.xDOI Listing
April 2011

Isolation of RNP granules.

Methods Mol Biol 2011 ;703:265-73

Department of Clinical Biochemistry, Copenhagen University Hospital, Copenhagen, Denmark.

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http://dx.doi.org/10.1007/978-1-59745-248-9_18DOI Listing
March 2011

Na(v)1.8 channelopathy in mutant mice deficient for myelin protein zero is detrimental to motor axons.

Brain 2011 Feb 17;134(Pt 2):585-601. Epub 2010 Dec 17.

Institute of Neuroscience and Pharmacology, Panum, University of Copenhagen, Denmark.

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https://academic.oup.com/brain/article-lookup/doi/10.1093/br
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http://dx.doi.org/10.1093/brain/awq336DOI Listing
February 2011

Differential expression of cellular microRNAs in HPV-11 transfected cells. An analysis by three different array platforms and qRT-PCR.

Biochem Biophys Res Commun 2010 Dec 13;403(3-4):357-62. Epub 2010 Nov 13.

Institute of Cellular and Molecular Medicine, DNA Tumor Virus Laboratory, University of Copenhagen, Panum Institute, Blegdamsvej 3, DK-2200, Denmark.

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http://linkinghub.elsevier.com/retrieve/pii/S0006291X1002093
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http://dx.doi.org/10.1016/j.bbrc.2010.11.035DOI Listing
December 2010

Ascertainment biases in SNP chips affect measures of population divergence.

Mol Biol Evol 2010 Nov 17;27(11):2534-47. Epub 2010 Jun 17.

Department of Biostatistics, Copenhagen University, Copenhagen, Denmark.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msq148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3107607PMC
November 2010

[Diagnosis of neuroendocrine tumours in the gastrointestinal tract].

Ugeskr Laeger 2010 Oct;172(43):2957-60

Klinisk Biokemisk Afdeling (KB3014), Rigshospitalet, 2100 København Ø, Denmark.

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October 2010

Molecular signatures of thyroid follicular neoplasia.

Endocr Relat Cancer 2010 Sep 28;17(3):691-708. Epub 2010 Jul 28.

Department of Clinical Biochemistry, Rigshospitalet, University of Copenhagen, 2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1677/ERC-09-0288DOI Listing
September 2010

Gene expression profiling of placentas affected by pre-eclampsia.

J Biomed Biotechnol 2010 3;2010:787545. Epub 2010 Mar 3.

Department of Clinical Biochemistry, Hvidovre Hospital, University of Copenhagen, Kettegaard Allé 30, 2650 Hvidovre, Denmark.

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http://dx.doi.org/10.1155/2010/787545DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2831461PMC
May 2010

Deregulated genes in sporadic vestibular schwannomas.

Otol Neurotol 2010 Feb;31(2):256-66

The Department of Oto-rhino-laryngology, Head and Neck Surgery, Gentofte University Hospital, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1097/MAO.0b013e3181be6478DOI Listing
February 2010

MicroRNAs show mutually exclusive expression patterns in the brain of adult male rats.

PLoS One 2009 Oct 6;4(10):e7225. Epub 2009 Oct 6.

Institute for Biological Psychiatry, Psychiatric Centre Sct. Hans, Roskilde, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007225PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752988PMC
October 2009

Influence of smoking on colonic gene expression profile in Crohn's disease.

PLoS One 2009 Jul 15;4(7):e6210. Epub 2009 Jul 15.

Department of Gastroenterology, Medical Section, Herlev Hospital, University of Copenhagen, Copenhagen, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0006210PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2708910PMC
July 2009

Nuclear translocation contributes to regulation of DNA excision repair activities.

DNA Repair (Amst) 2009 Jun 18;8(6):682-9. Epub 2009 Apr 18.

Department of Science, Systems and Models, Roskilde University, Universitetsvej 1, 4000 Roskilde, Denmark.

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http://dx.doi.org/10.1016/j.dnarep.2009.03.005DOI Listing
June 2009

Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium.

Genet Epidemiol 2009 Apr;33(3):266-74

Department of Biostatistics, Copenhagen University, Copenhagen, Denmark.

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http://dx.doi.org/10.1002/gepi.20378DOI Listing
April 2009

Embryonic expression of Drosophila IMP in the developing CNS and PNS.

Gene Expr Patterns 2009 Mar 11;9(3):138-43. Epub 2008 Dec 11.

Department of Biology, University of Copenhagen, Ole Maaloes Vej 5, DK-2200 Copenhagen N, Denmark.

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http://dx.doi.org/10.1016/j.gep.2008.12.001DOI Listing
March 2009

[Pharmacogenetics and tailored drug therapy].

Ugeskr Laeger 2009 Mar;171(10):790-4

Haematologisk Afdeling, Rigshospitalet, DK-2100 København Ø.

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March 2009

Functional analysis of HNPCC-related missense mutations in MSH2.

Mutat Res 2008 Oct 4;645(1-2):44-55. Epub 2008 Sep 4.

Department of Science, Systems and Models, Roskilde University, Roskilde, Denmark.

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https://linkinghub.elsevier.com/retrieve/pii/S00275107080018
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http://dx.doi.org/10.1016/j.mrfmmm.2008.08.015DOI Listing
October 2008

The synthetic NCAM-derived peptide, FGL, modulates the transcriptional response to traumatic brain injury.

Neurosci Lett 2008 May 28;437(2):148-53. Epub 2008 Mar 28.

Protein Laboratory, Department of Neuroscience and Pharmacology, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://linkinghub.elsevier.com/retrieve/pii/S030439400800350
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http://dx.doi.org/10.1016/j.neulet.2008.03.070DOI Listing
May 2008

MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation.

Mol Cell 2008 May;30(4):460-71

Biotech Research and Innovation Centre, University of Copenhagen, Ole Maaløes Vej 5, DK-2200, Copenhagen, Denmark.

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http://dx.doi.org/10.1016/j.molcel.2008.05.001DOI Listing
May 2008

[Genomic microarray technology. The Danish Society of Clinical Biochemistry].

Ugeskr Laeger 2008 Mar;170(12):1037

Klinisk Biokemisk Afdeling, Rigshospitalet, DK-2100 København Ø.

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March 2008

Effect of astrocyte-targeted production of IL-6 on traumatic brain injury and its impact on the cortical transcriptome.

Dev Neurobiol 2008 Feb;68(2):195-208

Institute of Neurosciences and Department of Cellular Biology, Physiology and Immunology, Animal Physiology Unit, Faculty of Sciences, Autonomous University of Barcelona, Bellaterra, Barcelona, Spain.

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http://doi.wiley.com/10.1002/dneu.20584
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February 2008

Blau syndrome-associated mutations in exon 4 of the caspase activating recruitment domain 15 (CARD 15) gene are not found in ethnic Danes with sarcoidosis.

Clin Respir J 2007 Dec;1(2):74-9

Department of Medicine B, Division of Lung Transplantation, Rigshospitalet, Copenhagen University Hospital, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1111/j.1752-699X.2007.00037.xDOI Listing
December 2007

Diverging mechanisms for TNF-alpha receptors in normal mouse brains and in functional recovery after injury: From gene to behavior.

J Neurosci Res 2007 Sep;85(12):2668-85

Institute of Neurosciences and Department of Cellular Biology, Physiology and Immunology, Animal Physiology Unit, Faculty of Sciences, Autonomous University of Barcelona, Bellaterra, Spain.

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http://dx.doi.org/10.1002/jnr.21126DOI Listing
September 2007

CARD15 status and familial predisposition for Crohn's disease and colonic gene expression.

Dig Dis Sci 2007 Aug 5;52(8):1783-9. Epub 2007 Apr 5.

Department of Gastroenterology C, Herlev Hospital, University of Copenhagen, Herlev Ringvej, DK-2730, Herlev, Denmark.

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http://dx.doi.org/10.1007/s10620-006-9737-5DOI Listing
August 2007

Treatment response and colonic gene expression in patients with Crohn's disease.

Scand J Gastroenterol 2007 Jul;42(7):834-40

Department of Gastroenterology C, Herlev Hospital, University of Copenhagen, Herlev, Denmark.

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http://dx.doi.org/10.1080/00365520601127166DOI Listing
July 2007

Expression of the genes dual oxidase 2, lipocalin 2 and regenerating islet-derived 1 alpha in Crohn's disease.

Scand J Gastroenterol 2007 Apr;42(4):454-63

Department of Gastroenterology C, Herlev Hospital, University of Copenhagen, Herlev Ringvej, DK-2730 Herlev, Denmark.

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http://dx.doi.org/10.1080/00365520600976266DOI Listing
April 2007

Characterization of osteoclasts derived from CD14+ monocytes isolated from peripheral blood.

J Bone Miner Metab 2007 1;25(1):36-45. Epub 2007 Jan 1.

Nordic Bioscience A/S, Herlev Hovedgade 207, DK-2730, Herlev, Denmark.

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http://dx.doi.org/10.1007/s00774-006-0725-9DOI Listing
February 2007

Clinical phenotype and gene expression profile in Crohn's disease.

Am J Physiol Gastrointest Liver Physiol 2007 Jan 7;292(1):G298-304. Epub 2006 Sep 7.

Department of Gastroenterology C, Herlev Hospital, University of Copenhagen, Herlev Ringvej, Herlev DK-2730, Denmark.

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http://dx.doi.org/10.1152/ajpgi.00321.2006DOI Listing
January 2007

Prognostic significance of metallothionein in B-cell lymphomas.

Blood 2006 Nov 25;108(10):3514-9. Epub 2006 Jul 25.

Department of Pathology 5444, Copenhagen University Hospital, Rigshospitalet, Blegdamsvej 9, 2100 Kbh Ø, Denmark.

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http://www.bloodjournal.org/cgi/doi/10.1182/blood-2006-04-01
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http://dx.doi.org/10.1182/blood-2006-04-015305DOI Listing
November 2006

[Microarray data analysis].

Ugeskr Laeger 2006 May;168(22):2159-62

RH Microarray Center, H:S Rigshospitalet, Klinisk Biokemisk afdeling, København.

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May 2006

Microarray-based classification of diffuse large B-cell lymphoma.

Eur J Haematol 2005 Jun;74(6):453-65

Department of Pathology, Copenhagen University Hospital, Rigshospitalet, Denmark.

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http://dx.doi.org/10.1111/j.1600-0609.2005.00429.xDOI Listing
June 2005

[How far are we from the clinical use of array technology?].

Ugeskr Laeger 2005 May;167(20):2168-70

Amtssygehuset i Herlev, Medicinsk Gastroenterologisk Afdeling C.

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May 2005

Microarrays and Crohn's disease: collecting reliable information.

Scand J Gastroenterol 2005 Apr;40(4):369-77

Department of Gastroenterology C, Herlev Hospital, Denmark.

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http://dx.doi.org/10.1080/00365520510012226DOI Listing
April 2005

Presymptomatic diagnosis using a deletion of a single codon in families with hereditary non-polyposis colorectal cancer.

Mutat Res 2005 Feb;570(1):89-96

Department of Clinical Genetics, Copenhagen University Hospital, H:S Rigshospitalet, Blegdamsvej 9, DK-2100 Copenhagen O, Denmark.

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http://dx.doi.org/10.1016/j.mrfmmm.2004.10.002DOI Listing
February 2005