Fernando H Biase

Fernando H Biase

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Fernando H Biase

Fernando H Biase

Publications by authors named "Fernando H Biase"

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16Publications

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Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos.

iScience 2018 Sep 16;7:16-29. Epub 2018 Aug 16.

Department of Bioengineering, University of California San Diego, San Diego, CA 92130, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S25890042183012
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http://dx.doi.org/10.1016/j.isci.2018.08.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6135740PMC
September 2018

Transcriptome data of peripheral white blood cells from beef heifers collected at the time of artificial insemination.

Data Brief 2018 Jun 21;18:706-709. Epub 2018 Mar 21.

Department of Animal Sciences, Auburn University, 599 Devall Dr, Auburn, AL 36839, United States.

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https://linkinghub.elsevier.com/retrieve/pii/S23523409183026
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http://dx.doi.org/10.1016/j.dib.2018.03.062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996294PMC
June 2018

Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cells.

BMC Genomics 2018 May 10;19(1):351. Epub 2018 May 10.

Department of Animal Sciences, Auburn University, 559 Devall Dr, Auburn, AL, 36849, USA.

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http://dx.doi.org/10.1186/s12864-018-4738-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5946446PMC
May 2018

Extraction of total RNA from single-oocytes and single-cell mRNA sequencing of swine oocytes.

BMC Res Notes 2018 Feb 27;11(1):155. Epub 2018 Feb 27.

Department of Animal Sciences, Auburn University, 559 Devall Dr, Auburn, AL, 36839, USA.

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http://dx.doi.org/10.1186/s13104-018-3264-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5828076PMC
February 2018

Oocyte Developmental Competence: Insights from Cross-Species Differential Gene Expression and Human Oocyte-Specific Functional Gene Networks.

Authors:
Fernando H Biase

OMICS 2017 03 16;21(3):156-168. Epub 2017 Feb 16.

Department of Animal Sciences, Auburn University , Auburn, Alabama.

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http://www.liebertpub.com/doi/10.1089/omi.2016.0177
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http://dx.doi.org/10.1089/omi.2016.0177DOI Listing
March 2017

In vitro maturation alters gene expression in bovine oocytes.

Zygote 2016 Aug 17;24(4):624-33. Epub 2016 Feb 17.

Escola de Medicina Veterinária,Universidade Norte do Paraná,Arapongas,PR,Brazil.

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http://dx.doi.org/10.1017/S0967199415000672DOI Listing
August 2016

Mapping RNA-RNA interactome and RNA structure in vivo by MARIO.

Nat Commun 2016 06 24;7:12023. Epub 2016 Jun 24.

Department of Bioengineering, University of California, San Diego, Powell-Focht Bioengineering Hall 384, 9500 Gilman Drive, MC 0412, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1038/ncomms12023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4931010PMC
June 2016

Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing.

Genome Res 2014 Nov 5;24(11):1787-96. Epub 2014 Aug 5.

Department of Bioengineering, University of California San Diego, La Jolla, California 92093, USA

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http://dx.doi.org/10.1101/gr.177725.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4216920PMC
November 2014

Time-variant clustering model for understanding cell fate decisions.

Proc Natl Acad Sci U S A 2014 Nov 22;111(44):E4797-806. Epub 2014 Oct 22.

Department of Bioengineering, University of California, San Diego, CA 92093

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http://dx.doi.org/10.1073/pnas.1407388111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226122PMC
November 2014

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009