Federico Agostini

Federico Agostini

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Federico Agostini

Federico Agostini

Publications by authors named "Federico Agostini"

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16Publications

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Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing.

Cell 2018 Aug 2;174(5):1067-1081.e17. Epub 2018 Aug 2.

The Francis Crick Institute, Midland Road 1, Kings Cross, London NW1 1AT, UK; Department of Molecular Neuroscience, UCL Institute of Neurology, Queen Square, London WC1N 3BG, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2018.07.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6108849PMC
August 2018

No way out: when RNA elements promote nuclear retention.

EMBO J 2018 03 27;37(6). Epub 2018 Feb 27.

The Francis Crick Institute, London, UK.

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http://dx.doi.org/10.15252/embj.201899123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5852650PMC
March 2018

ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli.

Bioinformatics 2014 Oct 1;30(20):2975-7. Epub 2014 Jul 1.

Gene Function and Evolution, Bioinformatics and Genomics, Centre for Genomic Regulation (CRG), 08003 Barcelona, Spain and Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain Gene Function and Evolution, Bioinformatics and Genomics, Centre for Genomic Regulation (CRG), 08003 Barcelona, Spain and Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btu420DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184263PMC
October 2014

SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences.

BMC Genomics 2014 Oct 23;15:925. Epub 2014 Oct 23.

Gene Function and Evolution, Centre for Genomic Regulation (CRG), C/ Dr, Aiguader 88, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1186/1471-2164-15-925DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223730PMC
October 2014

Molecular landscape of the interaction between the urease accessory proteins UreE and UreG.

Biochim Biophys Acta 2014 Sep 27;1844(9):1662-74. Epub 2014 Jun 27.

Laboratory of Bioinorganic Chemistry, Department of Pharmacy and Biotechnology, University of Bologna, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2014.06.016DOI Listing
September 2014

Discovery of protein-RNA networks.

Mol Biosyst 2014 Jul 23;10(7):1632-42. Epub 2014 Apr 23.

Gene Function and Evolution, Centre for Genomic Regulation (CRG), Dr. Aiguader 88, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1039/c4mb00099dDOI Listing
July 2014

The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities.

Bioinformatics 2014 Jun 3;30(11):1601-8. Epub 2014 Feb 3.

Gene Function and Evolution, Centre for Genomic Regulation (CRG), Dr. Aiguader 88 and Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btu074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4029037PMC
June 2014

Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein.

Nucleic Acids Res 2013 Dec 3;41(22):9987-98. Epub 2013 Sep 3.

Gene Function and Evolution, Bioinformatics and Genomics, Centre for Genomic Regulation (CRG), 08003 Barcelona, Spain and Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/nar/gkt794DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905859PMC
December 2013

catRAPID omics: a web server for large-scale prediction of protein-RNA interactions.

Bioinformatics 2013 Nov 23;29(22):2928-30. Epub 2013 Aug 23.

Gene Function and Evolution, Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btt495DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3810848PMC
November 2013

X-inactivation: quantitative predictions of protein interactions in the Xist network.

Nucleic Acids Res 2013 Jan 22;41(1):e31. Epub 2012 Oct 22.

Centre for Genomic Regulation, Dr Aiguader 88, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/nar/gks968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3592426PMC
January 2013

Sequence-based prediction of protein solubility.

J Mol Biol 2012 Aug 9;421(2-3):237-41. Epub 2011 Dec 9.

Centre for Genomic Regulation (CRG) and Universitat Pompeu Fabra (UPF), Dr. Aiguader, 88, Barcelona 08003, Spain.

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http://dx.doi.org/10.1016/j.jmb.2011.12.005DOI Listing
August 2012

DnaK functions as a central hub in the E. coli chaperone network.

Cell Rep 2012 Mar 8;1(3):251-64. Epub 2012 Mar 8.

Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany.

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http://dx.doi.org/10.1016/j.celrep.2011.12.007DOI Listing
March 2012