Publications by authors named "Federico Abascal"

37Publications

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Nature 2020 02 5;578(7793):102-111. Epub 2020 Feb 5.

The Broad Institute of MIT and Harvard, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41586-020-1965-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054214PMC
February 2020

An Ancient Baboon Genome Demonstrates Long-Term Population Continuity in Southern Africa.

Genome Biol Evol 2020 04;12(4):407-412

School of Geography, Archaeology and Environmental Studies, University of the Witwatersrand, Braamfontein, South Africa.

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http://dx.doi.org/10.1093/gbe/evaa019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7197492PMC
April 2020

Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation.

NAR Genom Bioinform 2020 Mar 19;2(1):lqz023. Epub 2019 Dec 19.

Bioinformatics Unit, Spanish National Cancer Research Centre, 28029 Madrid, Spain.

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http://dx.doi.org/10.1093/nargab/lqz023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924539PMC
March 2020

De novo assembly of English yew (Taxus baccata) transcriptome and its applications for intra- and inter-specific analyses.

Plant Mol Biol 2018 Jul 30;97(4-5):337-345. Epub 2018 May 30.

Division of Florence, Institute of Biosciences and Bioresources, National Research Council, 50019, Sesto Fiorentino, FI, Italy.

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http://dx.doi.org/10.1007/s11103-018-0742-9DOI Listing
July 2018

Most Alternative Isoforms Are Not Functionally Important.

Trends Biochem Sci 2017 06 5;42(6):408-410. Epub 2017 May 5.

Current address: Life Sciences Department, Barcelona Supercomputing Center (BSC-CNS), 08034 Barcelona, Spain.

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http://dx.doi.org/10.1016/j.tibs.2017.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6449685PMC
June 2017

Alternative Splicing May Not Be the Key to Proteome Complexity.

Trends Biochem Sci 2017 02 3;42(2):98-110. Epub 2016 Oct 3.

Structural Biology and Bioinformatics Programme, Spanish National Cancer Research Centre (CNIO), Melchor Fernández Almagro, 3, 28029 Madrid, Spain; National Bioinformatics Institute (INB), Spanish National Cancer Research Centre (CNIO), Melchor Fernández Almagro, 3, 28029 Madrid, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.tibs.2016.08.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6526280PMC
February 2017

The evolutionary fate of alternatively spliced homologous exons after gene duplication.

Genome Biol Evol 2015 Apr 29;7(6):1392-403. Epub 2015 Apr 29.

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.

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https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
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http://dx.doi.org/10.1093/gbe/evv076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4494069PMC
April 2015

Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals.

Bioinformatics 2015 Jul 2;31(14):2257-61. Epub 2015 Mar 2.

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid 28029, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btv132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4495291PMC
July 2015

Diversity and evolution of membrane intrinsic proteins.

Biochim Biophys Acta 2014 May 16;1840(5):1468-81. Epub 2013 Dec 16.

Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales-CSIC (MNCN-CSIC), José Gutiérrez Abascal 2, 28006 Madrid, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.bbagen.2013.12.001DOI Listing
May 2014

Subfunctionalization via adaptive evolution influenced by genomic context: the case of histone chaperones ASF1a and ASF1b.

Mol Biol Evol 2013 Aug 2;30(8):1853-66. Epub 2013 May 2.

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.

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http://dx.doi.org/10.1093/molbev/mst086DOI Listing
August 2013

The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates.

BMC Genomics 2012 Nov 15;13:626. Epub 2012 Nov 15.

Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales, CSIC, José Gutiérrez Abascal 2, 28006, Madrid, Spain.

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http://dx.doi.org/10.1186/1471-2164-13-626DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551647PMC
November 2012

LRRC8 proteins share a common ancestor with pannexins, and may form hexameric channels involved in cell-cell communication.

Bioessays 2012 Jul 25;34(7):551-60. Epub 2012 Apr 25.

Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales CSIC, José Gutiérrez Abascal, Madrid, Spain.

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http://dx.doi.org/10.1002/bies.201100173DOI Listing
July 2012

The evolution of the mitochondrial genetic code in arthropods revisited.

Mitochondrial DNA 2012 Apr 7;23(2):84-91. Epub 2012 Mar 7.

Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales CSIC, José Gutiérrez Abascal 2, 28006 Madrid, Spain.

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http://dx.doi.org/10.3109/19401736.2011.653801DOI Listing
April 2012

Evolutionary analyses of gap junction protein families.

Biochim Biophys Acta 2013 Jan 14;1828(1):4-14. Epub 2012 Feb 14.

Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales CSIC, Madrid, Spain.

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http://dx.doi.org/10.1016/j.bbamem.2012.02.007DOI Listing
January 2013

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.

Nucleic Acids Res 2010 Jul 30;38(Web Server issue):W7-13. Epub 2010 Apr 30.

Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales, CSIC, José Gutiérrez Abascal, 2, 28006 Madrid, Spain.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896173PMC
July 2010

Genetic code prediction for metazoan mitochondria with GenDecoder.

Methods Mol Biol 2009 ;537:233-42

Departamento de Genética, Bioquímica e Inmunología, Facultad de Biología, Universidad de Vigo, Vigo, Spain.

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http://dx.doi.org/10.1007/978-1-59745-251-9_11DOI Listing
August 2009

CentrosomeDB: a human centrosomal proteins database.

Nucleic Acids Res 2009 Jan 29;37(Database issue):D175-80. Epub 2008 Oct 29.

Computer Architecture Department, Complutense University of Madrid, Madrid, Spain.

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http://dx.doi.org/10.1093/nar/gkn815DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686521PMC
January 2009

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.

Bioinformatics 2008 May 12;24(9):1208-9. Epub 2008 Mar 12.

BioComputing Unit, National Center of Biotechnology (CSIC), Madrid, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btn094DOI Listing
May 2008

MtArt: a new model of amino acid replacement for Arthropoda.

Mol Biol Evol 2007 Jan 16;24(1):1-5. Epub 2006 Oct 16.

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http://dx.doi.org/10.1093/molbev/msl136DOI Listing
January 2007

GenDecoder: genetic code prediction for metazoan mitochondria.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W389-93

Departamento de Bioquímica, Genética, e Inmunología, Universidad de Vigo, 36310 Vigo, Spain.

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http://dx.doi.org/10.1093/nar/gkl044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538875PMC
July 2006

Parallel evolution of the genetic code in arthropod mitochondrial genomes.

PLoS Biol 2006 May 25;4(5):e127. Epub 2006 Apr 25.

Departamento de Bioquímica, Genética, e Inmunología, Universidad de Vigo, Vigo, Spain.

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http://dx.doi.org/10.1371/journal.pbio.0040127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1440934PMC
May 2006

ProtTest: selection of best-fit models of protein evolution.

Bioinformatics 2005 May 12;21(9):2104-5. Epub 2005 Jan 12.

Department of Biochemistry, Genetics and Immunology, Universidad de Vigo, Spain.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bti263DOI Listing
May 2005

Automatic annotation of protein function based on family identification.

Proteins 2003 Nov;53(3):683-92

Protein Design Group, National Centre for Biotechnology, CNB-CSIC, Cantoblanco, Madrid, Spain.

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http://dx.doi.org/10.1002/prot.10449DOI Listing
November 2003

Reductive genome evolution in Buchnera aphidicola.

Proc Natl Acad Sci U S A 2003 Jan 9;100(2):581-6. Epub 2003 Jan 9.

Centro de Astrobiologia, Instituto Nacional de Técnica Aeroespacial-Consejo Superior de Investigaciones Cientificas, Carretera de Ajalvir kilómetro 4, 28850 Torrejón de Ardoz, Madrid, Spain.

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http://dx.doi.org/10.1073/pnas.0235981100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC141039PMC
January 2003

Clustering of proximal sequence space for the identification of protein families.

Bioinformatics 2002 Jul;18(7):908-21

Protein Design Group, National Centre for Biotechnology, CNB-CSIC, Cantoblanco, Madrid E-28049, Spain.

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http://dx.doi.org/10.1093/bioinformatics/18.7.908DOI Listing
July 2002