Publications by authors named "Federica Di Palma"

47Publications

microRNA profiling in the Weddell seal suggests novel regulatory mechanisms contributing to diving adaptation.

BMC Genomics 2020 Apr 15;21(1):303. Epub 2020 Apr 15.

Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR47UZ, UK.

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http://dx.doi.org/10.1186/s12864-020-6675-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7158035PMC
April 2020

The evolutionary dynamics of microRNAs in domestic mammals.

Sci Rep 2018 11 19;8(1):17050. Epub 2018 Nov 19.

Earlham Institute, Norwich Research Park, Colney Lane, Norwich, NR47UZ, United Kingdom.

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http://www.nature.com/articles/s41598-018-34243-8
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http://dx.doi.org/10.1038/s41598-018-34243-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6242877PMC
November 2018

Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation.

Nat Ecol Evol 2018 07 25;2(7):1128-1138. Epub 2018 Jun 25.

Department of Biology, University of Victoria, Victoria, British Columbia, Canada.

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http://dx.doi.org/10.1038/s41559-018-0581-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6519129PMC
July 2018

MIF-Induced Stromal PKCβ/IL8 Is Essential in Human Acute Myeloid Leukemia.

Cancer Res 2017 01 21;77(2):303-311. Epub 2016 Nov 21.

Department of Molecular Haematology, Norwich Medical School, University of East Anglia, Norwich, United Kingdom.

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http://dx.doi.org/10.1158/0008-5472.CAN-16-1095DOI Listing
January 2017

LaGomiCs-Lagomorph Genomics Consortium: An International Collaborative Effort for Sequencing the Genomes of an Entire Mammalian Order.

J Hered 2016 07 26;107(4):295-308. Epub 2016 Feb 26.

From the Division of Animal Sciences, Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy (Fontanesi); Vertebrate and Health Genomics, The Genome Analysis Centre (TGAC), Norwich, UK (Di Palma); Broad Institute of MIT and Harvard, Cambridge, MA (Di Palma); European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK (Flicek); School of Life Sciences, Arizona State University, Tempe, AZ (Smith); Department of Wildlife, Fish, and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, Sweden (Thulin); CIBIO, Centro de Investigação em Biodiversidade e Recursos Geneticos, Universidade do Porto, Campus Agrario de Vairao, Vairao, Portugal (Alves); and Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, Porto, Portugal (Alves).

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http://dx.doi.org/10.1093/jhered/esw010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888434PMC
July 2016

The genomic substrate for adaptive radiation in African cichlid fish.

Nature 2014 Sep 3;513(7518):375-381. Epub 2014 Sep 3.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature13726DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4353498PMC
September 2014

The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations.

Bioinformatics 2014 Dec 28;30(24):3558-60. Epub 2014 Aug 28.

Integrative Genomics of Ageing Group, Institute of Integrative Biology, University of Liverpool, Liverpool, UK, Broad Institute of MIT and Harvard, Cambridge, MA, USA, Department of Biology, University of Rochester, NY, USA, Vertebrate and Health Genomics, The Genome Analysis Center, Norwich, UK, Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden and Department of Genetics, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu579DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253829PMC
December 2014

Unsupervised genome-wide recognition of local relationship patterns.

BMC Genomics 2013 May 24;14:347. Epub 2013 May 24.

Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1186/1471-2164-14-347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3669000PMC
May 2013

The African coelacanth genome provides insights into tetrapod evolution.

Nature 2013 Apr;496(7445):311-6

Molecular Genetics Program, Benaroya Research Institute, Seattle, Washington 98101, USA.

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http://dx.doi.org/10.1038/nature12027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633110PMC
April 2013

Origins of shared genetic variation in African cichlids.

Mol Biol Evol 2013 Apr 28;30(4):906-17. Epub 2012 Dec 28.

School of Biology, Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Georgia, USA.

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http://dx.doi.org/10.1093/molbev/mss326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3603313PMC
April 2013

A high-resolution map of human evolutionary constraint using 29 mammals.

Nature 2011 Oct 12;478(7370):476-82. Epub 2011 Oct 12.

Broad Institute of Harvard and Massachusetts Institute of Technology, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature10530DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207357PMC
October 2011

Genome-wide synteny through highly sensitive sequence alignment: Satsuma.

Bioinformatics 2010 May 5;26(9):1145-51. Epub 2010 Mar 5.

Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859124PMC
May 2010

Identification of repetitive elements in the genome of Oreochromis niloticus: tilapia repeat masker.

Mar Biotechnol (NY) 2010 Apr 21;12(2):121-5. Epub 2009 Nov 21.

Agricultural Research Organization, Institute of Animal Science, Bet Dagan, 50250, Israel.

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http://dx.doi.org/10.1007/s10126-009-9236-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178446PMC
April 2010

Construction of bacterial artificial chromosome libraries for the Lake Malawi cichlid (Metriaclima zebra), and the blind cavefish (Astyanax mexicanus).

Zebrafish 2007 ;4(1):41-7

Hubbard Center for Genome Studies, University of New Hampshire, Durham, New Hampshire, USA.

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http://dx.doi.org/10.1089/zeb.2006.9996DOI Listing
March 2008

Mutations in Mcoln3 associated with deafness and pigmentation defects in varitint-waddler (Va) mice.

Proc Natl Acad Sci U S A 2002 Nov 25;99(23):14994-9. Epub 2002 Oct 25.

Section on Neurogenetics, Laboratory of Molecular Biology, National Institute on Deafness and Other Communication Disorders, National Institutes of Health, 5 Research Court, Rockville, MD 20850, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.222425399
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http://dx.doi.org/10.1073/pnas.222425399DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC137533PMC
November 2002