Publications by authors named "Fatih Ozsolak"

29Publications

Attomole-level Genomics with Single-molecule Direct DNA, cDNA and RNA Sequencing Technologies.

Authors:
Fatih Ozsolak

Curr Issues Mol Biol 2016 8;18:43-8. Epub 2015 Jul 8.

Helicos BioSciences Corporation Cambridge, MA, USA.

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December 2016

Noncoding RNAs that associate with YB-1 alter proliferation in prostate cancer cells.

RNA 2015 Jun 22;21(6):1159-72. Epub 2015 Apr 22.

Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.

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http://dx.doi.org/10.1261/rna.045559.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436668PMC
June 2015

Quantitative polyadenylation site mapping with single-molecule direct RNA sequencing.

Authors:
Fatih Ozsolak

Methods Mol Biol 2014 ;1125:145-55

Helicos BioSciences Corporation, One Kendall Square, Cambridge, MA, 02139, USA,

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http://dx.doi.org/10.1007/978-1-62703-971-0_13DOI Listing
November 2014

Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.

Cell 2014 Feb;156(4):812-24

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2013.12.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3939777PMC
February 2014

Posttranscriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in Schizosaccharomyces pombe.

Mol Cell Biol 2012 Oct 20;32(20):4206-14. Epub 2012 Aug 20.

Laboratory of Signal Transduction, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina, USA.

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http://dx.doi.org/10.1128/MCB.00325-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3457339PMC
October 2012

An in-depth map of polyadenylation sites in cancer.

Nucleic Acids Res 2012 Sep 29;40(17):8460-71. Epub 2012 Jun 29.

Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.

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https://nar.oxfordjournals.org/content/40/17/8460.full-text-
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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gks637
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http://dx.doi.org/10.1093/nar/gks637DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458571PMC
September 2012

Third-generation sequencing techniques and applications to drug discovery.

Authors:
Fatih Ozsolak

Expert Opin Drug Discov 2012 Mar 2;7(3):231-43. Epub 2012 Feb 2.

Helicos BioSciences Corp., Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1517/17460441.2012.660145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3319653PMC
March 2012

Profiling of short RNAs using Helicos single-molecule sequencing.

Methods Mol Biol 2012 ;822:219-32

Helicos BioSciences Corporation, Cambridge, MA, USA.

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http://dx.doi.org/10.1007/978-1-61779-427-8_15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272357PMC
April 2012

Gene expression profiles and differential cytoglobin expression in atrophy and adenocarcinoma of the prostate.

Prostate 2012 Jun 24;72(9):931-7. Epub 2011 Oct 24.

Department of Pathology and Immunology, Washington University, St. Louis, Missouri, USA.

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http://dx.doi.org/10.1002/pros.21494DOI Listing
June 2012

Single-molecule direct RNA sequencing without cDNA synthesis.

Wiley Interdiscip Rev RNA 2011 Jul-Aug;2(4):565-70. Epub 2011 Mar 14.

Helicos BioSciences Corporation, Cambridge, MA, USA.

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http://dx.doi.org/10.1002/wrna.84DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272359PMC
March 2012

Transcriptome profiling using single-molecule direct RNA sequencing.

Methods Mol Biol 2011 ;733:51-61

Helicos BioSciences Corporation, Cambridge, MA, USA.

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http://dx.doi.org/10.1007/978-1-61779-089-8_4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272358PMC
July 2011

RNA sequencing: advances, challenges and opportunities.

Nat Rev Genet 2011 Feb 30;12(2):87-98. Epub 2010 Dec 30.

Helicos BioSciences Corporation, One Kendall Square, Cambridge, Massachusetts 02139, USA.

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http://dx.doi.org/10.1038/nrg2934DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3031867PMC
February 2011

The Lkb1 metabolic sensor maintains haematopoietic stem cell survival.

Nature 2010 Dec;468(7324):659-63

Cancer Center and Center for Regenerative Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3037591PMC
http://dx.doi.org/10.1038/nature09572DOI Listing
December 2010

Digital transcriptome profiling from attomole-level RNA samples.

Genome Res 2010 Apr 4;20(4):519-25. Epub 2010 Feb 4.

Helicos BioSciences Corporation, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1101/gr.102129.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847755PMC
April 2010

Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.

Nat Methods 2010 Jan 29;7(1):47-9. Epub 2009 Nov 29.

Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

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http://www.nature.com/doifinder/10.1038/nmeth.1404
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http://dx.doi.org/10.1038/nmeth.1404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862482PMC
January 2010

Direct RNA sequencing.

Nature 2009 Oct 23;461(7265):814-8. Epub 2009 Sep 23.

Helicos BioSciences Corporation, One Kendall Square, Cambridge, Massachusetts 02139, USA.

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http://dx.doi.org/10.1038/nature08390DOI Listing
October 2009

Chromatin structure analyses identify miRNA promoters.

Genes Dev 2008 Nov;22(22):3172-83

Department of Dermatology and Cutaneous Biology Research Center, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.

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http://dx.doi.org/10.1101/gad.1706508DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593607PMC
November 2008

High-throughput mapping of the chromatin structure of human promoters.

Nat Biotechnol 2007 Feb 14;25(2):244-8. Epub 2007 Jan 14.

Melanoma Program in Medical Oncology, and Department of Pediatric Oncology, Dana-Farber Cancer Institute, Children's Hospital Boston, Harvard Medical School, 44 Binney Street, Boston, Massachusetts 02115, USA.

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http://www.nature.com/articles/nbt1279
Publisher Site
http://dx.doi.org/10.1038/nbt1279DOI Listing
February 2007