Farshad Farshidfar

Farshad Farshidfar

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Farshad Farshidfar

Farshad Farshidfar

Publications by authors named "Farshad Farshidfar"

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22Publications

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The Immune Landscape of Cancer.

Authors:
Vésteinn Thorsson David L Gibbs Scott D Brown Denise Wolf Dante S Bortone Tai-Hsien Ou Yang Eduard Porta-Pardo Galen F Gao Christopher L Plaisier James A Eddy Elad Ziv Aedin C Culhane Evan O Paull I K Ashok Sivakumar Andrew J Gentles Raunaq Malhotra Farshad Farshidfar Antonio Colaprico Joel S Parker Lisle E Mose Nam Sy Vo Jianfang Liu Yuexin Liu Janet Rader Varsha Dhankani Sheila M Reynolds Reanne Bowlby Andrea Califano Andrew D Cherniack Dimitris Anastassiou Davide Bedognetti Younes Mokrab Aaron M Newman Arvind Rao Ken Chen Alexander Krasnitz Hai Hu Tathiane M Malta Houtan Noushmehr Chandra Sekhar Pedamallu Susan Bullman Akinyemi I Ojesina Andrew Lamb Wanding Zhou Hui Shen Toni K Choueiri John N Weinstein Justin Guinney Joel Saltz Robert A Holt Charles S Rabkin Alexander J Lazar Jonathan S Serody Elizabeth G Demicco Mary L Disis Benjamin G Vincent Ilya Shmulevich

Immunity 2019 Aug;51(2):411-412

Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2019.08.004DOI Listing
August 2019

Gas Chromatography-Mass Spectrometry and Analysis of the Serum Metabolomic Profile Through Extraction and Derivatization of Polar Metabolites.

Authors:
Jodi Rattner Farshad Farshidfar Oliver F Bathe

Methods Mol Biol 2019 ;1928:235-249

Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.

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http://dx.doi.org/10.1007/978-1-4939-9027-6_13DOI Listing
June 2019

Type 3 Inositol 1,4,5-Trisphosphate Receptor Is Increased and Enhances Malignant Properties in Cholangiocarcinoma.

Authors:
Pimwipa Ueasilamongkol Tanaporn Khamphaya Mateus T Guerra Michele A Rodrigues Dawidson A Gomes Yong Kong Wei Wei Dhanpat Jain David C Trampert Meenakshisundaram Ananthanarayanan Jesus M Banales Lewis R Roberts Farshad Farshidfar Michael H Nathanson Jittima Weerachayaphorn

Hepatology 2019 Jun 28. Epub 2019 Jun 28.

Department of Physiology, Faculty of Science, Mahidol University, Bangkok, Thailand.

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http://dx.doi.org/10.1002/hep.30839DOI Listing
June 2019

A strategy for early detection of response to chemotherapy drugs based on treatment-related changes in the metabolome.

Authors:
Shahil Amin Jodi Rattner Mohammad Reza Keramati Farshad Farshidfar Mairéad G McNamara Jennifer J Knox Karen Kopciuk Hans J Vogel Oliver F Bathe

PLoS One 2019 2;14(4):e0213942. Epub 2019 Apr 2.

Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0213942PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6445409PMC
April 2019

Host phenotype is associated with reduced survival independent of tumour biology in patients with colorectal liver metastases.

Authors:
David P J van Dijk Matthew Krill Farshad Farshidfar Ting Li Sander S Rensen Steven W M Olde Damink Elijah Dixon Francis R Sutherland Chad G Ball Vera C Mazurak Vickie E Baracos Oliver F Bathe

J Cachexia Sarcopenia Muscle 2019 Feb 31;10(1):123-130. Epub 2018 Oct 31.

Department of Surgery and Oncology, Tom Baker Cancer Centre, University of Calgary, Calgary, Canada.

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http://doi.wiley.com/10.1002/jcsm.12358
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http://dx.doi.org/10.1002/jcsm.12358DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6438330PMC
February 2019

A Framework for Development of Useful Metabolomic Biomarkers and Their Effective Knowledge Translation.

Authors:
Calena R Marchand Farshad Farshidfar Jodi Rattner Oliver F Bathe

Metabolites 2018 Sep 30;8(4). Epub 2018 Sep 30.

Department of Oncology, University of Calgary, Calgary, AB T2N 1N4, Canada.

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http://www.mdpi.com/2218-1989/8/4/59
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http://dx.doi.org/10.3390/metabo8040059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6316283PMC
September 2018

Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers.

Authors:
Xinxin Peng Zhongyuan Chen Farshad Farshidfar Xiaoyan Xu Philip L Lorenzi Yumeng Wang Feixiong Cheng Lin Tan Kamalika Mojumdar Di Du Zhongqi Ge Jun Li George V Thomas Kivanc Birsoy Lingxiang Liu Huiwen Zhang Zhongming Zhao Calena Marchand John N Weinstein Oliver F Bathe Han Liang

Cell Rep 2018 04;23(1):255-269.e4

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Graduate Program in in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183043
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http://dx.doi.org/10.1016/j.celrep.2018.03.077DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5916795PMC
April 2018

Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas.

Authors:
Yang Liu Nilay S Sethi Toshinori Hinoue Barbara G Schneider Andrew D Cherniack Francisco Sanchez-Vega Jose A Seoane Farshad Farshidfar Reanne Bowlby Mirazul Islam Jaegil Kim Walid Chatila Rehan Akbani Rupa S Kanchi Charles S Rabkin Joseph E Willis Kenneth K Wang Shannon J McCall Lopa Mishra Akinyemi I Ojesina Susan Bullman Chandra Sekhar Pedamallu Alexander J Lazar Ryo Sakai Vésteinn Thorsson Adam J Bass Peter W Laird

Cancer Cell 2018 04 2;33(4):721-735.e8. Epub 2018 Apr 2.

Center for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2018.03.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966039PMC
April 2018

The Immune Landscape of Cancer.

Authors:
Vésteinn Thorsson David L Gibbs Scott D Brown Denise Wolf Dante S Bortone Tai-Hsien Ou Yang Eduard Porta-Pardo Galen F Gao Christopher L Plaisier James A Eddy Elad Ziv Aedin C Culhane Evan O Paull I K Ashok Sivakumar Andrew J Gentles Raunaq Malhotra Farshad Farshidfar Antonio Colaprico Joel S Parker Lisle E Mose Nam Sy Vo Jianfang Liu Yuexin Liu Janet Rader Varsha Dhankani Sheila M Reynolds Reanne Bowlby Andrea Califano Andrew D Cherniack Dimitris Anastassiou Davide Bedognetti Younes Mokrab Aaron M Newman Arvind Rao Ken Chen Alexander Krasnitz Hai Hu Tathiane M Malta Houtan Noushmehr Chandra Sekhar Pedamallu Susan Bullman Akinyemi I Ojesina Andrew Lamb Wanding Zhou Hui Shen Toni K Choueiri John N Weinstein Justin Guinney Joel Saltz Robert A Holt Charles S Rabkin Alexander J Lazar Jonathan S Serody Elizabeth G Demicco Mary L Disis Benjamin G Vincent Ilya Shmulevich

Immunity 2018 04 5;48(4):812-830.e14. Epub 2018 Apr 5.

Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2018.03.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5982584PMC
April 2018

A quantitative multimodal metabolomic assay for colorectal cancer.

Authors:
Farshad Farshidfar Karen A Kopciuk Robert Hilsden S Elizabeth McGregor Vera C Mazurak W Donald Buie Anthony MacLean Hans J Vogel Oliver F Bathe

BMC Cancer 2018 01 4;18(1):26. Epub 2018 Jan 4.

Department of Surgery, University of Calgary, Calgary, AB, Canada.

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https://bmccancer.biomedcentral.com/articles/10.1186/s12885-
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http://dx.doi.org/10.1186/s12885-017-3923-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5755335PMC
January 2018

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.

Authors:
Farshad Farshidfar Siyuan Zheng Marie-Claude Gingras Yulia Newton Juliann Shih A Gordon Robertson Toshinori Hinoue Katherine A Hoadley Ewan A Gibb Jason Roszik Kyle R Covington Chia-Chin Wu Eve Shinbrot Nicolas Stransky Apurva Hegde Ju Dong Yang Ed Reznik Sara Sadeghi Chandra Sekhar Pedamallu Akinyemi I Ojesina Julian M Hess J Todd Auman Suhn K Rhie Reanne Bowlby Mitesh J Borad Andrew X Zhu Josh M Stuart Chris Sander Rehan Akbani Andrew D Cherniack Vikram Deshpande Taofic Mounajjed Wai Chin Foo Michael S Torbenson David E Kleiner Peter W Laird David A Wheeler Autumn J McRee Oliver F Bathe Jesper B Andersen Nabeel Bardeesy Lewis R Roberts Lawrence N Kwong

Cell Rep 2017 06;19(13):2878-2880

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http://www.cell.com/cell-reports/pdf/S2211-1247(17)30214-0.p
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http://linkinghub.elsevier.com/retrieve/pii/S221112471730787
Publisher Site
http://dx.doi.org/10.1016/j.celrep.2017.06.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6141445PMC
June 2017

Novel Allosteric Pathway of Eg5 Regulation Identified through Multivariate Statistical Analysis of Hydrogen-Exchange Mass Spectrometry (HX-MS) Ligand Screening Data.

Authors:
Joey G Sheff Farshad Farshidfar Oliver F Bathe Karen Kopciuk Francesco Gentile Jack Tuszynski Khaled Barakat David C Schriemer

Mol Cell Proteomics 2017 03 5;16(3):428-437. Epub 2017 Jan 5.

From the ‡Department of Chemistry, University of Calgary, Calgary, Alberta, Canada;

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http://dx.doi.org/10.1074/mcp.M116.064246DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341003PMC
March 2017

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.

Authors:
Farshad Farshidfar Siyuan Zheng Marie-Claude Gingras Yulia Newton Juliann Shih A Gordon Robertson Toshinori Hinoue Katherine A Hoadley Ewan A Gibb Jason Roszik Kyle R Covington Chia-Chin Wu Eve Shinbrot Nicolas Stransky Apurva Hegde Ju Dong Yang Ed Reznik Sara Sadeghi Chandra Sekhar Pedamallu Akinyemi I Ojesina Julian M Hess J Todd Auman Suhn K Rhie Reanne Bowlby Mitesh J Borad Andrew X Zhu Josh M Stuart Chris Sander Rehan Akbani Andrew D Cherniack Vikram Deshpande Taofic Mounajjed Wai Chin Foo Michael S Torbenson David E Kleiner Peter W Laird David A Wheeler Autumn J McRee Oliver F Bathe Jesper B Andersen Nabeel Bardeesy Lewis R Roberts Lawrence N Kwong

Cell Rep 2017 03;18(11):2780-2794

Departments of Genomic Medicine, Melanoma Medical Oncology, Bioinformatics and Computational Biology, Pathology, and Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.02.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5493145PMC
March 2017

Urine and Serum Metabolomics Analyses May Distinguish between Stages of Renal Cell Carcinoma.

Authors:
Oluyemi S Falegan Mark W Ball Rustem A Shaykhutdinov Phillip M Pieroraio Farshad Farshidfar Hans J Vogel Mohamad E Allaf Matthew E Hyndman

Metabolites 2017 Feb 3;7(1). Epub 2017 Feb 3.

Department of Surgery, Cumming School of Medicine, University of Calgary, Calgary, T2N 4N1, AB, Canada.

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http://dx.doi.org/10.3390/metabo7010006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5372209PMC
February 2017

Distinguishing Benign from Malignant Pancreatic and Periampullary Lesions Using Combined Use of ¹H-NMR Spectroscopy and Gas Chromatography-Mass Spectrometry.

Authors:
Yarrow J McConnell Farshad Farshidfar Aalim M Weljie Karen A Kopciuk Elijah Dixon Chad G Ball Francis R Sutherland Hans J Vogel Oliver F Bathe

Metabolites 2017 Jan 13;7(1). Epub 2017 Jan 13.

Department of Oncology, University of Calgary, Calgary, AB T2N 4N2, Canada.

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http://dx.doi.org/10.3390/metabo7010003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5372206PMC
January 2017

A validated metabolomic signature for colorectal cancer: exploration of the clinical value of metabolomics.

Authors:
Farshad Farshidfar Aalim M Weljie Karen A Kopciuk Robert Hilsden S Elizabeth McGregor W Donald Buie Anthony MacLean Hans J Vogel Oliver F Bathe

Br J Cancer 2016 09 25;115(7):848-57. Epub 2016 Aug 25.

Department of Surgery, University of Calgary, Calgary, AB, Canada.

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http://dx.doi.org/10.1038/bjc.2016.243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5046202PMC
September 2016

Temporal characterization of serum metabolite signatures in lung cancer patients undergoing treatment.

Authors:
Desirée Hao M Omair Sarfaraz Farshad Farshidfar D Gwyn Bebb Camelia Y Lee Cynthia M Card Marilyn David Aalim M Weljie

Metabolomics 2016 27;12:58. Epub 2016 Feb 27.

Department of Biological Sciences, University of Calgary, Calgary, AB T2N 1N4 Canada.

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http://dx.doi.org/10.1007/s11306-016-0961-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4819600PMC
February 2016

From genotype to functional phenotype: unraveling the metabolomic features of colorectal cancer.

Authors:
Oliver F Bathe Farshad Farshidfar

Genes (Basel) 2014 Jul 22;5(3):536-60. Epub 2014 Jul 22.

Department of Surgery, Tom Baker Cancer Center, University of Calgary, 1331 29th St NW, Calgary, AB T2N 4N2, Canada.

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http://www.mdpi.com/2073-4425/5/3/536
Publisher Site
http://dx.doi.org/10.3390/genes5030536DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4198916PMC
July 2014

Serum metabolomic profile as a means to distinguish stage of colorectal cancer.

Authors:
Farshad Farshidfar Aalim M Weljie Karen Kopciuk W Don Buie Anthony Maclean Elijah Dixon Francis R Sutherland Andrea Molckovsky Hans J Vogel Oliver F Bathe

Genome Med 2012 May 14;4(5):42. Epub 2012 May 14.

Department of Surgery, University of Calgary, 3330 Hospital Dr NW, Calgary, AB, Canada, T2N 4N1.

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http://dx.doi.org/10.1186/gm341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3506908PMC
May 2012

Sciatic nerve compression resulting from posttraumatic pseudoaneurysm of the superior gluteal artery: a case report and literature review.

Authors:
Mohammad Reza Zafarghandi Hamed Akhlaghi Abolfazl Shojaiefard Farshad Farshidfar

J Trauma 2009 Jun;66(6):1731-4

Department of Vascular Surgery and Traumatology, Tehran University of Medical Sciences and Health Services, Tehran, Iran.

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http://dx.doi.org/10.1097/01.ta.0000242215.42642.01DOI Listing
June 2009

Patterns of extremity traumas leading to amputation in Iran: results of Iranian National Trauma Project.

Authors:
Majid Moini Mohammad R Rasouli Ali Khaji Farshad Farshidfar Pedram Heidari

Chin J Traumatol 2009 Apr;12(2):77-80

Sina Trauma and Surgery Research Center, Sina Hospital, Tehran University of Medical Sciences, Tehran, Iran.

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April 2009

Treatment of pemphigus vulgaris with mycophenolate mofetil as a steroid-sparing agent.

Authors:
Nafiseh Esmaili Cheyda Chams-Davatchi Mahin Valikhani Farshad Farshidfar Nima Parvaneh Banafshe Tamizifar

Eur J Dermatol 2008 Mar-Apr;18(2):159-64

Department of Dermatology, School of Medicine, Medical Sciences - University of Tehran, Tehran, Iran.

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http://dx.doi.org/10.1684/ejd.2008.0354DOI Listing
July 2008