Falk Schreiber

Falk Schreiber

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Falk Schreiber

Falk Schreiber

Publications by authors named "Falk Schreiber"

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Corrigendum to Stage-specific metabolic features of differentiating neurons: Implications for toxicant sensitivity Toxicol Appl Pharmacol, 354 (2018) 64-80.

Toxicol Appl Pharmacol 2019 Jun 16;372:70. Epub 2019 Apr 16.

In Vitro Toxicology and Biomedicine, Dept Inaugurated by the Doerenkamp-Zbinden Foundation, University of Konstanz, 78457 Konstanz, Germany; CAAT-Europe, University of Konstanz, Konstanz 78457, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.taap.2019.04.010DOI Listing
June 2019

Metabolic Responses to Polymyxin Treatment in ATCC 19606: Integrating Transcriptomics and Metabolomics with Genome-Scale Metabolic Modeling.

mSystems 2019 Jan-Feb;4(1). Epub 2019 Feb 5.

Infection & Immunity Program, Monash Biomedicine Discovery Institute and Department of Microbiology, Monash University, Melbourne, Australia.

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http://dx.doi.org/10.1128/mSystems.00157-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6365644PMC
February 2019

A high-throughput approach to identify specific neurotoxicants/ developmental toxicants in human neuronal cell function assays.

ALTEX 2018 21;35(2):235-253. Epub 2018 Jan 21.

In vitro Toxicology and Biomedicine, Dept inaugurated by the Doerenkamp-Zbinden foundation, University of Konstanz, Konstanz, Germany.

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http://dx.doi.org/10.14573/altex.1712182DOI Listing
January 2019

The Virtual-Spine Platform-Acquiring, visualizing, and analyzing individual sitting behavior.

PLoS One 2018 13;13(6):e0195670. Epub 2018 Jun 13.

Department of Computer and Information Science, University of Konstanz, Konstanz, Baden-Württemberg, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0195670PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5999082PMC
November 2018

Stage-specific metabolic features of differentiating neurons: Implications for toxicant sensitivity.

Toxicol Appl Pharmacol 2018 09 24;354:64-80. Epub 2017 Dec 24.

In Vitro Toxicology and Biomedicine, Dept Inaugurated by the Doerenkamp-Zbinden Foundation, University of Konstanz, 78457 Konstanz, Germany; CAAT-Europe, University of Konstanz, Konstanz 78457, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.taap.2017.12.013DOI Listing
September 2018

Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell.

J Integr Bioinform 2018 Jul 11;15(2). Epub 2018 Jul 11.

Computational Life Sciences, Department of Computer and Information Science, University of Konstanz, Konstanz, Germany.

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http://dx.doi.org/10.1515/jib-2018-0003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6167046PMC
July 2018

Genome-scale metabolic modeling of responses to polymyxins in Pseudomonas aeruginosa.

Gigascience 2018 04;7(4)

Monash Biomedicine Discovery Institute, Department of Microbiology, Faculty of Medicine, Nursing and Health Sciences, Monash University, Melbourne 3800, Australia.

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http://dx.doi.org/10.1093/gigascience/giy021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6333913PMC
April 2018

Information Visualization for Biological Data.

Methods Mol Biol 2017 ;1526:403-415

Faculty of Information Technology, Monash University, Clayton, VIC, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6613-4_21DOI Listing
January 2018

BioVis Explorer: A visual guide for biological data visualization techniques.

PLoS One 2017 1;12(11):e0187341. Epub 2017 Nov 1.

Faculty of Information Technology, Monash University, Clayton, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0187341PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5665558PMC
December 2017

The Metabolic Signature of Biomass Formation in Barley.

Plant Cell Physiol 2016 Sep 7;57(9):1943-60. Epub 2016 Jul 7.

Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, D-06466 Gatersleben, Germany

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http://dx.doi.org/10.1093/pcp/pcw117DOI Listing
September 2016

Metabolic Architecture of the Cereal Grain and Its Relevance to Maximize Carbon Use Efficiency.

Plant Physiol 2015 Nov 22;169(3):1698-713. Epub 2015 Sep 22.

Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, 06466 Gatersleben, Germany (H.R., E.M., V.R., H.T., L.B.);Institut für Pharmazie, Martin-Luther-University of Halle, 06120 Halle, Germany (E.G.-B.);Institute of Experimental Physics 5, University of Würzburg, 97074 Würzburg, Germany (E.M., P.M.J.);Research Center Magnetic Resonance Bavaria, 97074 Wurzburg, Germany (R.K., P.M.J.);Department of Medical Imaging, University of Ottawa, Ottawa, Ontario, Canada K1Y 4E9 (G.M.); andClayton School of IT, Monash University, Melbourne, Victoria 3800, Australia (F.S.)

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http://dx.doi.org/10.1104/pp.15.00981DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4634074PMC
November 2015

Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants.

Front Bioeng Biotechnol 2015 21;3:167. Epub 2015 Oct 21.

Faculty of Information Technology, Monash University , Clayton, VIC , Australia ; Institute of Computer Science, Martin Luther University Halle-Wittenberg , Halle , Germany.

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http://dx.doi.org/10.3389/fbioe.2015.00167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617106PMC
November 2015

Why integrate InfoVis and SciVis?: An example from systems biology.

IEEE Comput Graph Appl 2014 Nov-Dec;34(6):69-73

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http://dx.doi.org/10.1109/MCG.2014.122DOI Listing
September 2015

Quantitative Multilevel Analysis of Central Metabolism in Developing Oilseeds of Oilseed Rape during in Vitro Culture.

Plant Physiol 2015 Jul 5;168(3):828-48. Epub 2015 May 5.

Brookhaven National Laboratory, Biological, Environmental, and Climate Sciences Department, Upton, New York 11973 (J.S., I.H., A.R., D.N.);Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (N.H., L.B., H.R.);Institut für Pflanzengenetik, Universität Hannover, 30419 Hannover, Germany (T.H., H.-P.B.);Department of Environmental Science, Indian Institute of Advanced Research, Koba, Gandhinagar 382007, Gujarat, India (D.N.);Clayton School of Information Technology, Monash University, Melbourne, Victoria 3800, Australia (M.K., F.S.);Institute of Computer Science, University Halle-Wittenberg, 06120 Halle, Germany (F.S.); andBayer CropScience, 9052 Zwijnaarde, Belgium (P.D.)

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http://dx.doi.org/10.1104/pp.15.00385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4741336PMC
July 2015

Flux visualization using VANTED/FluxMap.

Methods Mol Biol 2014 ;1191:225-33

Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK), Gatersleben, Germany.

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http://dx.doi.org/10.1007/978-1-4939-1170-7_14DOI Listing
May 2015

Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation.

Genomics 2015 May 13;105(5-6):275-81. Epub 2015 Mar 13.

Laboratory of Systems Biology and Bioinformatics (LBB), Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S08887543150004
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http://dx.doi.org/10.1016/j.ygeno.2015.03.001DOI Listing
May 2015

A unified framework for estimating parameters of kinetic biological models.

BMC Bioinformatics 2015 Mar 27;16:104. Epub 2015 Mar 27.

Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.

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http://dx.doi.org/10.1186/s12859-015-0500-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464135PMC
March 2015

Integrative analysis of metabolic models - from structure to dynamics.

Front Bioeng Biotechnol 2014 26;2:91. Epub 2015 Jan 26.

Monash University , Melbourne, VIC , Australia ; Martin-Luther-University Halle-Wittenberg , Halle , Germany.

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http://dx.doi.org/10.3389/fbioe.2014.00091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306315PMC
February 2015

Controllability in cancer metabolic networks according to drug targets as driver nodes.

PLoS One 2013 25;8(11):e79397. Epub 2013 Nov 25.

Laboratory of Systems Biology and Bioinformatics (LBB), Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0079397PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3839908PMC
January 2015

Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering.

Plant Cell 2014 Oct 24;26(10):3847-66. Epub 2014 Oct 24.

Institute of Computer Science, Martin Luther University Halle-Wittenberg, 06120 Halle, Germany Faculty of IT, Monash University, Clayton, VIC 3800, Australia.

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http://dx.doi.org/10.1105/tpc.114.130328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4247579PMC
October 2014

Flux balance analysis as an alternative method to estimate fluxes without labeling.

Methods Mol Biol 2014 ;1090:281-99

Leibniz-Institute of Plant Genetics and Crop Plant Research Gatersleben (IPK), Gatersleben, Germany.

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http://dx.doi.org/10.1007/978-1-62703-688-7_17DOI Listing
July 2014

Elementary flux modes, flux balance analysis, and their application to plant metabolism.

Methods Mol Biol 2014 ;1083:231-52

Institute of Computer Science, SunGene GmbH, Gatersleben and Martin-Luther University Halle-Wittenberg, Halle, Germany.

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http://dx.doi.org/10.1007/978-1-62703-661-0_14DOI Listing
June 2014

BioNetLink - an architecture for working with network data.

J Integr Bioinform 2014 Jun 30;11(2):241. Epub 2014 Jun 30.

IPK Gatersleben, Germany.

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http://dx.doi.org/10.2390/biecoll-jib-2014-241DOI Listing
June 2014

Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale.

Plant Physiol 2013 Oct 7;163(2):637-47. Epub 2013 Aug 7.

Leibniz Institute of Plant Genetics and Crop Plant Research Gatersleben, D-06466 Gatersleben, Germany.

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http://dx.doi.org/10.1104/pp.113.224006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3793045PMC
October 2013

Translation of SBGN maps: Process Description to Activity Flow.

BMC Syst Biol 2013 Oct 31;7:115. Epub 2013 Oct 31.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466 Stadt Seeland OT Gatersleben, Germany.

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http://dx.doi.org/10.1186/1752-0509-7-115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4228393PMC
October 2013

Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.

BMC Bioinformatics 2013 Aug 16;14:250. Epub 2013 Aug 16.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.

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http://dx.doi.org/10.1186/1471-2105-14-250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765910PMC
August 2013

An improved constraint filtering technique for inferring hidden states and parameters of a biological model.

Bioinformatics 2013 Apr 22;29(8):1052-9. Epub 2013 Feb 22.

Systems Biology Group, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btt097DOI Listing
April 2013

Editorial.

J Integr Bioinform 2013 Mar;10(1):29-32

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstr. 3, 06466 Stadt Seeland, http://www.ipk-gatersleben.de/.

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http://dx.doi.org/10.1515/jib-2013-226DOI Listing
March 2013

VANTED v2: a framework for systems biology applications.

BMC Syst Biol 2012 Nov 10;6:139. Epub 2012 Nov 10.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1186/1752-0509-6-139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610154PMC
November 2012

Visual analysis of transcriptome data in the context of anatomical structures and biological networks.

Front Plant Sci 2012 15;3:252. Epub 2012 Nov 15.

Leibniz Institute of Plant Genetics and Crop Plant Research Gatersleben Gatersleben, Germany.

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http://dx.doi.org/10.3389/fpls.2012.00252DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3498740PMC
November 2012

IDPredictor: predict database links in biomedical database.

J Integr Bioinform 2012 Jun 26;9(2):190. Epub 2012 Jun 26.

Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany.

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http://dx.doi.org/10.2390/biecoll-jib-2012-190DOI Listing
June 2012

FluxMap: a VANTED add-on for the visual exploration of flux distributions in biological networks.

BMC Syst Biol 2012 May 1;6:33. Epub 2012 May 1.

Leibniz Institute of Plant Genetics and Crop Plant Research, IPK, Molecular Genetics, Corrensstr 3, Gatersleben 06466, Germany.

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http://dx.doi.org/10.1186/1752-0509-6-33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3403919PMC
May 2012

CentiLib: comprehensive analysis and exploration of network centralities.

Bioinformatics 2012 Apr 5;28(8):1178-9. Epub 2012 Mar 5.

Department of Natural Sciences III, Institute of Computer Science, Martin Luther University Halle-Wittenberg, Halle, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bts106DOI Listing
April 2012

Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation.

Nat Protoc 2012 Mar 1;7(3):579-93. Epub 2012 Mar 1.

Leibniz Institute of Plant Genetics and Crop Plant Research Gatersleben (IPK), Gatersleben, Germany.

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http://dx.doi.org/10.1038/nprot.2012.002DOI Listing
March 2012

MetaCrop 2.0: managing and exploring information about crop plant metabolism.

Nucleic Acids Res 2012 Jan 15;40(Database issue):D1173-7. Epub 2011 Nov 15.

Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1093/nar/gkr1004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245004PMC
January 2012

Dynamic ¹³C/¹ H NMR imaging uncovers sugar allocation in the living seed.

Plant Biotechnol J 2011 Dec 28;9(9):1022-37. Epub 2011 Apr 28.

Institute of Experimental Physics, University of Würzburg, Am Hubland, Würzburg, Germany.

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http://dx.doi.org/10.1111/j.1467-7652.2011.00618.xDOI Listing
December 2011

Combined noninvasive imaging and modeling approaches reveal metabolic compartmentation in the barley endosperm.

Plant Cell 2011 Aug 19;23(8):3041-54. Epub 2011 Aug 19.

Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1105/tpc.111.087015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180809PMC
August 2011

Creating views on integrated multidomain data.

Bioinformatics 2011 Jul 6;27(13):1839-45. Epub 2011 May 6.

Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btr282DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3117374PMC
July 2011

DBE2 - management of experimental data for the VANTED system.

J Integr Bioinform 2011 Jul 26;8(2):162. Epub 2011 Jul 26.

Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3,06466 Gatersleben, Germany.

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http://dx.doi.org/10.2390/biecoll-jib-2011-162DOI Listing
July 2011

HTPheno: an image analysis pipeline for high-throughput plant phenotyping.

BMC Bioinformatics 2011 May 12;12:148. Epub 2011 May 12.

Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstrasse 3, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1186/1471-2105-12-148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3113939PMC
May 2011

Editing, validating and translating of SBGN maps.

Bioinformatics 2010 Sep 13;26(18):2340-1. Epub 2010 Jul 13.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Martin Luther University of Halle-Wittenberg, Halle, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btq407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935428PMC
September 2010

Structural analysis of metabolic networks based on flux centrality.

J Theor Biol 2010 Aug 18;265(3):261-9. Epub 2010 May 18.

Department of Computer and Electrical Engineering, Furtwangen University of Applied Sciences, Robert-Gerwig-Platz 1, 78120 Furtwangen, Germany.

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http://dx.doi.org/10.1016/j.jtbi.2010.05.009DOI Listing
August 2010

An engineer's view on regulation of seed development.

Trends Plant Sci 2010 Jun 17;15(6):303-7. Epub 2010 Apr 17.

Leibniz Institute of Plant Genetics and Crop Plant Research Gatersleben (IPK), Corrensstrasse 3, D-06466 Gatersleben, Germany.

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http://dx.doi.org/10.1016/j.tplants.2010.03.005DOI Listing
June 2010

Apomictic and sexual ovules of Boechera display heterochronic global gene expression patterns.

Plant Cell 2010 Mar 19;22(3):655-71. Epub 2010 Mar 19.

Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung, D-06466 Gatersleben, Germany.

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http://dx.doi.org/10.1105/tpc.109.072223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2861462PMC
March 2010

Novel developments of the MetaCrop information system for facilitating systems biological approaches.

J Integr Bioinform 2010 Mar 25;7(3). Epub 2010 Mar 25.

Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr 3, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.2390/biecoll-jib-2010-125DOI Listing
March 2010

Integration of -omics data and networks for biomedical research with VANTED.

J Integr Bioinform 2010 Feb 2;7(2):112. Epub 2010 Feb 2.

Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany.

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http://dx.doi.org/10.2390/biecoll-jib-2010-112DOI Listing
February 2010

Bioinformatics strategies for the analysis of lipids.

Methods Mol Biol 2009 ;580:339-68

Department of Medical Biochemistry and Biophysics, Division of Physical Chemistry II, Karolinska Institutet, Stockholm, Sweden.

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http://link.springer.com/10.1007/978-1-60761-325-1_19
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http://dx.doi.org/10.1007/978-1-60761-325-1_19DOI Listing
January 2010

Lessons from GNE-deficient embryonic stem cells: sialic acid biosynthesis is involved in proliferation and gene expression.

Glycobiology 2010 Jan 30;20(1):107-17. Epub 2009 Sep 30.

Institute of Physiological Chemistry, Martin Luther University Halle-Wittenberg, Hollystr. 1, D-06114 Halle, Germany.

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http://dx.doi.org/10.1093/glycob/cwp153DOI Listing
January 2010

Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets.

BMC Bioinformatics 2010 Jan 11;11:20. Epub 2010 Jan 11.

Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.

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http://dx.doi.org/10.1186/1471-2105-11-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2821319PMC
January 2010

A generic algorithm for layout of biological networks.

BMC Bioinformatics 2009 Nov 12;10:375. Epub 2009 Nov 12.

Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, D-06466 Gatersleben, Germany.

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http://dx.doi.org/10.1186/1471-2105-10-375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785797PMC
November 2009

FBA-SimVis: interactive visualization of constraint-based metabolic models.

Bioinformatics 2009 Oct 3;25(20):2755-7. Epub 2009 Jul 3.

Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben and Institute of Computer Science, Martin-Luther-University Halle-Wittenberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btp408DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759546PMC
October 2009

Kavosh: a new algorithm for finding network motifs.

BMC Bioinformatics 2009 Oct 4;10:318. Epub 2009 Oct 4.

Laboratory of Systems Biology and Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.

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http://dx.doi.org/10.1186/1471-2105-10-318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765973PMC
October 2009

MODA: an efficient algorithm for network motif discovery in biological networks.

Genes Genet Syst 2009 Oct;84(5):385-95

Laboratory of Systems Biology and Bioinformatics (LBB), Institute of Biochemistry and Biophysics and Center of Excellence in Biomathematics, University of Tehran, Iran.

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October 2009

Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism.

Plant Physiol 2009 Jan 5;149(1):585-98. Epub 2008 Nov 5.

Leibniz Institute of Plant Genetics and Crop Plant Research, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1104/pp.108.129635DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2613719PMC
January 2009

Exploration of networks using overview+detail with constraint-based cooperative layout.

IEEE Trans Vis Comput Graph 2008 Nov-Dec;14(6):1293-300

Microsoft Research.

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http://dx.doi.org/10.1109/TVCG.2008.130DOI Listing
December 2008

2.5D visualisation of overlapping biological networks.

J Integr Bioinform 2008 Nov 10;5(1). Epub 2008 Nov 10.

The University of Sydney, Sydney, Australia.

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http://dx.doi.org/10.2390/biecoll-jib-2008-90DOI Listing
November 2008

Visualization.

Authors:
Falk Schreiber

Methods Mol Biol 2008 ;453:441-50

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Germany.

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http://dx.doi.org/10.1007/978-1-60327-429-6_23DOI Listing
October 2008

Centrality analysis methods for biological networks and their application to gene regulatory networks.

Gene Regul Syst Bio 2008 May 15;2:193-201. Epub 2008 May 15.

Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Gatersleben, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2733090PMC
May 2008

Modularization of biochemical networks based on classification of Petri net t-invariants.

BMC Bioinformatics 2008 Feb 8;9:90. Epub 2008 Feb 8.

Technical University of Applied Sciences Berlin, FB VI/FB V, Bioinformatics/Biotechnology, Seestr, 64, 13347 Berlin, Germany.

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http://dx.doi.org/10.1186/1471-2105-9-90DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2277402PMC
February 2008

MetaCrop: a detailed database of crop plant metabolism.

Nucleic Acids Res 2008 Jan 11;36(Database issue):D954-8. Epub 2007 Oct 11.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, D-06466 Gatersleben, Germany.

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http://dx.doi.org/10.1093/nar/gkm835DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238923PMC
January 2008

Ranking of network elements based on functional substructures.

J Theor Biol 2007 Oct 6;248(3):471-9. Epub 2007 Jun 6.

Leibniz Institute of Plant Genetics and Crop Plant Research, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1016/j.jtbi.2007.05.038DOI Listing
October 2007

Dynamic exploration and editing of KEGG pathway diagrams.

Bioinformatics 2007 Feb 1;23(3):344-50. Epub 2006 Dec 1.

Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstrasse 3, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btl611DOI Listing
February 2007

Meta-All: a system for managing metabolic pathway information.

BMC Bioinformatics 2006 Oct 23;7:465. Epub 2006 Oct 23.

Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr, 3, 06466 Gatersleben, Germany.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-7-465DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635068PMC
October 2006

Exploration of biological network centralities with CentiBiN.

BMC Bioinformatics 2006 Apr 21;7:219. Epub 2006 Apr 21.

Bioinformatics Research Group, SRI International, 333 Ravenswood Ave EK207, Menlo Park, CA 94025, USA.

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http://dx.doi.org/10.1186/1471-2105-7-219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1524990PMC
April 2006

VANTED: a system for advanced data analysis and visualization in the context of biological networks.

BMC Bioinformatics 2006 Mar 6;7:109. Epub 2006 Mar 6.

Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr, 3, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1186/1471-2105-7-109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1413562PMC
March 2006

Integrating data from biological experiments into metabolic networks with the DBE information system.

In Silico Biol 2005 ;5(2):93-102

Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, D-06466 Gatersleben, Germany.

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October 2005

MAVisto: a tool for the exploration of network motifs.

Bioinformatics 2005 Sep 14;21(17):3572-4. Epub 2005 Jul 14.

Leibniz Institute of Plant Genetics and Crop Plant Research, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bti556DOI Listing
September 2005

Evidence of a key role for photosynthetic oxygen release in oil storage in developing soybean seeds.

New Phytol 2005 Sep;167(3):777-86

Institut für Pflanzengenetik und Kulturpflanzenforschung, Corrensstr. 3, 06466 Gatersleben, Germany.

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http://dx.doi.org/10.1111/j.1469-8137.2005.01473.xDOI Listing
September 2005

Visualisation and navigation methods for typed protein-protein interaction networks.

Appl Bioinformatics 2003 ;2(3 Suppl):S19-24

School of Information Technologies, University of Sydney, Sydney, Australia.

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June 2004

The system architecture of the BioPath system.

In Silico Biol 2002 ;2(3):415-26

Fakultüt für Mathematik und Informatik, Universität Passau, 94030 Passau, Germany.

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July 2003

High quality visualization of biochemical pathways in BioPath.

Authors:
Falk Schreiber

In Silico Biol 2002 ;2(2):59-73

Fakultät für Mathematik und Informatik, Universität Passau, Germany.

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February 2003