Publications by authors named "Fabio Piano"

48Publications

A Genome-Wide RNAi Screen for Enhancers of a Germline Tumor Phenotype Caused by Elevated GLP-1/Notch Signaling in .

G3 (Bethesda) 2020 Dec 3;10(12):4323-4334. Epub 2020 Dec 3.

Skirball Institute of Biomolecular Medicine, Departments of Cell Biology and Pathology, NYU Grossman School of Medicine

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December 2020

Developmental dynamics of gene expression and alternative polyadenylation in the Caenorhabditis elegans germline.

Genome Biol 2018 01 24;19(1). Epub 2018 Jan 24.

Center for Genomics & Systems Biology, Department of Biology, New York University, New York, NY, 10012, USA.

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January 2018

Genome Architecture and Evolution of a Unichromosomal Asexual Nematode.

Curr Biol 2017 Oct 21;27(19):2928-2939.e6. Epub 2017 Sep 21.

Department of Biology, New York University, New York, NY 10003, USA; Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA; Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates. Electronic address:

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October 2017

Identification of Conserved MEL-28/ELYS Domains with Essential Roles in Nuclear Assembly and Chromosome Segregation.

PLoS Genet 2016 06 24;12(6):e1006131. Epub 2016 Jun 24.

Andalusian Center for Developmental Biology (CABD), CSIC/Junta de Andalucia/Universidad Pablo de Olavide, Seville, Spain.

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June 2016

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics.

Mol Cell Proteomics 2016 05 24;15(5):1642-57. Epub 2016 Feb 24.

From the ‡Max Delbrück Center for Molecular Medicine, D-13092 Berlin, Germany; **Charité-Universitätsmedizin Berlin, 10117 Berlin, Germany.

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May 2016

Wild worm embryogenesis harbors ubiquitous polygenic modifier variation.

Elife 2015 Aug 22;4. Epub 2015 Aug 22.

Department of Biology and Center for Genomics and Systems Biology, New York University, New York, United States.

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August 2015

Uncovering buffered pleiotropy: a genome-scale screen for mel-28 genetic interactors in Caenorhabditis elegans.

G3 (Bethesda) 2014 Jan 10;4(1):185-96. Epub 2014 Jan 10.

Fairfield University Biology Department, Fairfield, Connecticut 06824.

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January 2014

High-throughput fluorescence-based isolation of live C. elegans larvae.

Nat Protoc 2012 Jul 19;7(8):1502-10. Epub 2012 Jul 19.

Department of Biology and Center for Genomics and Systems Biology, New York University, New York, USA.

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July 2012

RNAi methods and screening: RNAi based high-throughput genetic interaction screening.

Methods Cell Biol 2011 ;106:89-111

Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.

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March 2012

A model of cytoplasmically driven microtubule-based motion in the single-celled Caenorhabditis elegans embryo.

Proc Natl Acad Sci U S A 2011 Jun 13;108(26):10508-13. Epub 2011 Jun 13.

Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA.

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June 2011

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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December 2010

Rapid and accurate developmental stage recognition of C. elegans from high-throughput image data.

Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2010 Aug;2010(13-18 June 2010):3089-3096

Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA.

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August 2010

Evolution of early embryogenesis in rhabditid nematodes.

Dev Biol 2009 Nov 28;335(1):253-62. Epub 2009 Jul 28.

Department of Biology, New York University, New York, NY 10003, USA.

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November 2009

Diverse roles of actin in C. elegans early embryogenesis.

BMC Dev Biol 2007 Dec 24;7:142. Epub 2007 Dec 24.

New York University, Department of Biology and Center for Comparative Functional Genomics, 100 Washington Square East, New York, NY 10003, USA.

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December 2007

C. elegans network biology: a beginning.

WormBook 2006 Aug 21:1-20. Epub 2006 Aug 21.

Center for Comparative Functional Genomics, Department of Biology, New York University, New York, NY 10003, USA.

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August 2006

UTRome.org: a platform for 3'UTR biology in C. elegans.

Nucleic Acids Res 2008 Jan 5;36(Database issue):D57-62. Epub 2007 Nov 5.

Department of Biology and Center for Genomics and Systems Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.

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January 2008

MEL-28 is downstream of the Ran cycle and is required for nuclear-envelope function and chromatin maintenance.

Curr Biol 2006 Sep;16(17):1757-63

Center for Comparative Functional Genomics, Department of Biology, New York University, New York, New York 10003, USA.

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September 2006

A peptidomimetic siRNA transfection reagent for highly effective gene silencing.

Mol Biosyst 2006 Jun 17;2(6-7):312-7. Epub 2006 May 17.

Department of Chemistry, New York University, New York, NY 10003, USA.

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June 2006

Two phases of astral microtubule activity during cytokinesis in C. elegans embryos.

Dev Cell 2006 Apr;10(4):509-20

Laboratory for Developmental Genomics, RIKEN Center for Developmental Biology, 2-2-3 Minatojima-minamimachi, Kobe, 650-0047, Japan.

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April 2006

A genome-wide map of conserved microRNA targets in C. elegans.

Curr Biol 2006 Mar 2;16(5):460-71. Epub 2006 Feb 2.

Center for Comparative Functional Genomics, Department of Biology, New York University, New York, New York 10003, USA.

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March 2006

Nucleoporins NPP-1, NPP-3, NPP-4, NPP-11 and NPP-13 are required for proper spindle orientation in C. elegans.

Dev Biol 2006 Jan 2;289(2):360-71. Epub 2005 Dec 2.

Department of Molecular Biology and Genetics, Cornell University, 435 Biotechnology Building, Ithaca, NY 14853, USA.

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January 2006

Caenorhabditis elegans decapping proteins: localization and functional analysis of Dcp1, Dcp2, and DcpS during embryogenesis.

Mol Biol Cell 2005 Dec 5;16(12):5880-90. Epub 2005 Oct 5.

Department of Biology, City University of New York Graduate Center, College of Staten Island, Staten Island CUNY, New York, NY 10314, USA.

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December 2005

Toward automatic phenotyping of developing embryos from videos.

IEEE Trans Image Process 2005 Sep;14(9):1360-71

Courant Institute of Mathematical Sciences, New York University, New York, NY 10003, USA.

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September 2005

RNAi as a tool to study cell biology: building the genome-phenome bridge.

Curr Opin Cell Biol 2005 Feb;17(1):3-8

Center for Comparative Functional Genomics, Department of Biology, New York University, 1009 Silver Center, 100 Washington Sq E, New York, New York 10003, USA.

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February 2005

Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss.

Proc Natl Acad Sci U S A 2004 Jun 7;101(24):9003-8. Epub 2004 Jun 7.

Department of Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.

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June 2004

RNAiDB and PhenoBlast: web tools for genome-wide phenotypic mapping projects.

Nucleic Acids Res 2004 Jan;32(Database issue):D406-10

Center for Comparative Functional Genomics, Department of Biology, New York University, 1009 Silver Building, 100 Washington Square E., New York, NY 10003, USA.

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January 2004

mRNA capping enzyme requirement for Caenorhabditis elegans viability.

J Biol Chem 2003 Apr 7;278(16):14168-73. Epub 2003 Feb 7.

Center for Advanced Biotechnology and Medicine and Graduate Program in Biochemistry, Graduate School of Biomedical Sciences, University of Medicine and Dentistry of New Jersey, Piscataway 08854, USA.

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April 2003

Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans.

Curr Biol 2002 Nov;12(22):1959-64

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

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November 2002