Publications by authors named "Evy Timmerman"

45Publications

Impairment of Angiogenesis by Fatty Acid Synthase Inhibition Involves mTOR Malonylation.

Cell Metab 2018 12 23;28(6):866-880.e15. Epub 2018 Aug 23.

Laboratory of Angiogenesis and Vascular Metabolism, VIB Center for Cancer Biology (CCB), VIB, 3000 Leuven, Belgium; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-Sen University, Guangzhou 510060, Guangdong, P.R. China; Laboratory of Angiogenesis and Vascular Metabolism, Department of Oncology and Leuven Cancer Institute (LKI), KU Leuven, 3000 Leuven, Belgium. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15504131183046
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http://dx.doi.org/10.1016/j.cmet.2018.07.019DOI Listing
December 2018

Quality control in mass spectrometry-based proteomics.

Mass Spectrom Rev 2018 09 7;37(5):697-711. Epub 2017 Sep 7.

Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.

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http://dx.doi.org/10.1002/mas.21544DOI Listing
September 2018

Expanding the Interactome of TES by Exploiting TES Modules with Different Subcellular Localizations.

J Proteome Res 2017 05 20;16(5):2054-2071. Epub 2017 Apr 20.

Department of Biochemistry, Ghent University , 9000 Gent, Belgium.

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http://dx.doi.org/10.1021/acs.jproteome.7b00034DOI Listing
May 2017

Protease Substrate Profiling by N-Terminal COFRADIC.

Methods Mol Biol 2017 ;1574:51-76

VIB Proteomics Core, B-9000, Ghent, Belgium.

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http://dx.doi.org/10.1007/978-1-4939-6850-3_5DOI Listing
February 2018

Phase Separation of C9orf72 Dipeptide Repeats Perturbs Stress Granule Dynamics.

Mol Cell 2017 Mar;65(6):1044-1055.e5

Experimental Neurology and Leuven Research Institute for Neuroscience and Disease (LIND), Department of Neurosciences, KU Leuven - University of Leuven, 3000 Leuven, Belgium; Laboratory of Neurobiology, VIB, Center for Brain and Disease Research, 3000 Leuven, Belgium. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2017.02.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5364369PMC
March 2017

Proteomic approaches to identify substrates of the three Deg/HtrA proteases of the cyanobacterium Synechocystis sp. PCC 6803.

Biochem J 2015 Jun 16;468(3):373-84. Epub 2015 Apr 16.

Department of Chemistry, Umeå University, S-90187 Umeå, Sweden

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http://biochemj.org/lookup/doi/10.1042/BJ20150097
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http://dx.doi.org/10.1042/BJ20150097DOI Listing
June 2015

A COFRADIC protocol to study protein ubiquitination.

J Proteome Res 2014 Jun 20;13(6):3107-13. Epub 2014 May 20.

Department of Medical Protein Research, VIB , B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1021/pr4012443DOI Listing
June 2014

SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping.

J Proteomics 2013 Oct 11;91:164-71. Epub 2013 Jul 11.

Department of Proteomics, Center for Genetic Engineering and Biotechnology, Ave. 31 e/158 y 190, Cubanacán, Playa, P.O. Box 6162, 10600 Havana, Cuba. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2013.06.033DOI Listing
October 2013

A catalogue of putative HIV-1 protease host cell substrates.

Biol Chem 2012 Sep;393(9):915-31

Department of Medical Protein Research and Biochemistry, VIB, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1515/hsz-2012-0168DOI Listing
September 2012

Chromatographic retention time prediction for posttranslationally modified peptides.

Proteomics 2012 Apr;12(8):1151-9

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden.

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http://dx.doi.org/10.1002/pmic.201100386DOI Listing
April 2012

Selecting protein N-terminal peptides by combined fractional diagonal chromatography.

Nat Protoc 2011 Jul 14;6(8):1130-41. Epub 2011 Jul 14.

Department of Medical Protein Research, Vlaams Instituut voor Biotechnologie (VIB), Ghent, Belgium.

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http://dx.doi.org/10.1038/nprot.2011.355DOI Listing
July 2011

Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files.

J Proteome Res 2011 Aug 11;10(8):3840-3. Epub 2011 Jul 11.

Department of Medical Protein Research, VIB, Ghent, Belgium.

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http://dx.doi.org/10.1021/pr2005154DOI Listing
August 2011

The substrate specificity profile of human granzyme A.

Biol Chem 2010 Aug;391(8):983-97

Department of Medical Protein Research, Flanders Interuniversity Institute for Biotechnology, Ghent, Belgium.

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http://dx.doi.org/10.1515/BC.2010.096DOI Listing
August 2010

Complementary positional proteomics for screening substrates of endo- and exoproteases.

Nat Methods 2010 Jul 6;7(7):512-5. Epub 2010 Jun 6.

Department of Medical Protein Research, Vlaams Instituut voor Biotechnologie, Ghent, Belgium.

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http://dx.doi.org/10.1038/nmeth.1469DOI Listing
July 2010

Integrated proteomic analysis reveals a substantial enrichment of protein trafficking processes in hippocampus tissue after hypoxic stress.

J Proteome Res 2010 Jan;9(1):204-15

Department of Biomedical Sciences, University of Antwerp, B-2610 Antwerp, Belgium.

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http://dx.doi.org/10.1021/pr900517mDOI Listing
January 2010

Identification of Chlamydia trachomatis CT621, a protein delivered through the type III secretion system to the host cell cytoplasm and nucleus.

FEMS Immunol Med Microbiol 2009 Oct 2;57(1):46-58. Epub 2009 Jul 2.

Department of Medical Microbiology and Immunology, Aarhus University, Aarhus C, Denmark.

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http://dx.doi.org/10.1111/j.1574-695X.2009.00581.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784215PMC
October 2009

Analysis of proteins in Chlamydia trachomatis L2 outer membrane complex, COMC.

FEMS Immunol Med Microbiol 2009 Mar 27;55(2):187-95. Epub 2009 Jan 27.

Institute of Medical Microbiology and Immunology, University of Aarhus, Denmark.

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http://dx.doi.org/10.1111/j.1574-695X.2009.00522.xDOI Listing
March 2009

Peptizer, a tool for assessing false positive peptide identifications and manually validating selected results.

Mol Cell Proteomics 2008 Dec 30;7(12):2364-72. Epub 2008 Jul 30.

Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1074/mcp.M800082-MCP200DOI Listing
December 2008

Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity.

Mol Biochem Parasitol 2008 Sep 21;161(1):67-71. Epub 2008 May 21.

Laboratory of Parasitology, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, B-9820 Merelbeke, Belgium.

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http://dx.doi.org/10.1016/j.molbiopara.2008.05.004DOI Listing
September 2008

The proteome of the human neuroblastoma cell line SH-SY5Y: an enlarged proteome.

Biochim Biophys Acta 2008 Jul-Aug;1784(7-8):983-5. Epub 2008 Mar 19.

Department of Biomedical Sciences, Protein Chemistery, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium.

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http://dx.doi.org/10.1016/j.bbapap.2008.03.003DOI Listing
August 2008

Proteolytic cleavage of the Chlamydia pneumoniae major outer membrane protein in the absence of Pmp10.

Proteomics 2007 Dec;7(24):4477-87

Institute of Medical Microbiology and Immunology, University of Aarhus, Aarhus C, Denmark.

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http://dx.doi.org/10.1002/pmic.200700447DOI Listing
December 2007

A new approach for mapping sialylated N-glycosites in serum proteomes.

J Proteome Res 2007 Nov 5;6(11):4304-12. Epub 2007 Oct 5.

Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1021/pr0703728DOI Listing
November 2007

Assessing a novel microfluidic interface for shotgun proteome analyses.

J Sep Sci 2007 Jul;30(10):1468-76

Department of Medical Protein Research, VIB, Ghent, Belgium.

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http://dx.doi.org/10.1002/jssc.200700012DOI Listing
July 2007

The MAGUK protein MPP7 binds to the polarity protein hDlg1 and facilitates epithelial tight junction formation.

Mol Biol Cell 2007 May 1;18(5):1744-55. Epub 2007 Mar 1.

Medical Research Council Laboratory for Molecular Cell Biology, Cancer Research UK Oncogene and Signal Transduction Group, University College London, London WC1E 6BT, England.

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http://dx.doi.org/10.1091/mbc.e06-11-0980DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1855022PMC
May 2007

Improved tandem mass spectrometric characterization of 3-nitrotyrosine sites in peptides.

Rapid Commun Mass Spectrom 2006 ;20(19):2885-93

Department of Medical Protein Research and Biochemistry, Flanders Interuniversity Institute for Biotechnology and Faculty of Medicine and Health Sciences, Ghent University, A. Baertsoenkaai 3, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1002/rcm.2676DOI Listing
September 2007

The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile.

Proteomics 2005 Aug;5(12):3193-204

Department of Medical Protein Research, Flanders Interuniversity Institute for Biotechnology, Department of Biochemistry, Ghent University, A. Baertsoenkaai 3, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1002/pmic.200401142DOI Listing
August 2005