Publications by authors named "Eva Budinská"

47Publications

Microbiome analysis and predicted relative metabolomic turnover suggest bacterial heme and selenium metabolism are altered in the gastrointestinal system of zebrafish (Danio rerio) exposed to the organochlorine dieldrin.

Environ Pollut 2020 Oct 5;268(Pt B):115715. Epub 2020 Oct 5.

Department of Physiological Sciences and Center for Environmental and Human Toxicology, University of Florida, Gainesville, FL, 32611, USA; University of Florida Genetics Institute and Interdisciplinary Program in Biomedical Sciences Neuroscience, College of Veterinary Medicine, University of Florida, Gainesville, FL, 32611, USA. Electronic address:

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http://dx.doi.org/10.1016/j.envpol.2020.115715DOI Listing
October 2020

An Explorative Analysis of mRNA Expression as a Biomarker Test for FOLFIRI Treatment in Stage III Colon Cancer Patients: Results from Retrospective Analyses of the PETACC-3 Trial.

Cancers (Basel) 2020 Apr 15;12(4). Epub 2020 Apr 15.

Section of Molecular Disease Biology, Institute of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, 2100 Copenhagen, Denmark.

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http://dx.doi.org/10.3390/cancers12040977DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7226226PMC
April 2020

Evaluation of Microbiome-Host Relationships in the Zebrafish Gastrointestinal System Reveals Adaptive Immunity Is a Target of Bis(2-ethylhexyl) Phthalate (DEHP) Exposure.

Environ Sci Technol 2020 05 21;54(9):5719-5728. Epub 2020 Apr 21.

Department of Physiological Sciences and Center for Environmental and Human Toxicology, UF Genetics Institute, College of Veterinary Medicine, University of Florida, Gainesville, Florida 32611, United States.

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http://dx.doi.org/10.1021/acs.est.0c00628DOI Listing
May 2020

Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry.

Cell Rep 2019 07;28(3):832-843.e7

Department of Biology, Institute of Molecular Systems Biology, Federal Institute of Technology (ETH) Zurich, Zurich, Switzerland; Faculty of Science, University of Zurich, Zurich, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.06.046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6656695PMC
July 2019

Administration of the Probiotic Escherichia coli Strain A0 34/86 Resulted in a Stable Colonization of the Human Intestine During the First Year of Life.

Probiotics Antimicrob Proteins 2020 06;12(2):343-350

Department of Biology, Faculty of Medicine, Masaryk University, Kamenice 5, Building A6, 625 00, Brno, Czech Republic.

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http://dx.doi.org/10.1007/s12602-019-09548-3DOI Listing
June 2020

Porcine pathogenic Escherichia coli strains differ from human fecal strains in occurrence of bacteriocin types.

Vet Microbiol 2019 May 6;232:121-127. Epub 2019 Apr 6.

Department of Biology, Faculty of Medicine, Masaryk University, Brno, Czech Republic. Electronic address:

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http://dx.doi.org/10.1016/j.vetmic.2019.04.003DOI Listing
May 2019

Dynamics of allergy development during the first 5 years of life.

Eur J Pediatr 2018 Sep 22;177(9):1317-1325. Epub 2018 Jun 22.

Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic.

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http://dx.doi.org/10.1007/s00431-018-3188-9DOI Listing
September 2018

A critical comparison of topology-based pathway analysis methods.

PLoS One 2018 25;13(1):e0191154. Epub 2018 Jan 25.

RECETOX, Faculty of Science, Masarykova Univerzita, Brno, Czech Republic.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0191154PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784953PMC
February 2018

Identification of "BRAF-Positive" Cases Based on Whole-Slide Image Analysis.

Biomed Res Int 2017 24;2017:3926498. Epub 2017 Apr 24.

Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masarykova Univerzita, Kamenice 5, 625 00 Brno, Czech Republic.

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https://www.hindawi.com/journals/bmri/2017/3926498/
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http://dx.doi.org/10.1155/2017/3926498DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5421098PMC
February 2018

Dirigent proteins in plants: modulating cell wall metabolism during abiotic and biotic stress exposure.

J Exp Bot 2017 06;68(13):3287-3301

Laboratory of Molecular Plant Physiology and Functional Genomics and Proteomics of Plants, CEITEC-Central European Institute of Technology and National Centre for Biomolecular Research, Masaryk University Kamenice 5, CZ-625 00 Brno, Czech Republic.

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http://dx.doi.org/10.1093/jxb/erx141DOI Listing
June 2017

Image-based surrogate biomarkers for molecular subtypes of colorectal cancer.

Bioinformatics 2017 Jul;33(13):2002-2009

University Institute of Pathology, University of Lausanne, Switzerland.

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https://academic.oup.com/bioinformatics/article/33/13/2002/2
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http://dx.doi.org/10.1093/bioinformatics/btx027DOI Listing
July 2017

Joint analysis of histopathology image features and gene expression in breast cancer.

BMC Bioinformatics 2016 May 11;17(1):209. Epub 2016 May 11.

Department of Clinical Research, Faculty of Medicine, University of Bern, Bern, Switzerland.

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http://dx.doi.org/10.1186/s12859-016-1072-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4864935PMC
May 2016

ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data.

BMC Bioinformatics 2015 Oct 29;16:350. Epub 2015 Oct 29.

Institute of Biostatistics and Analyses, Faculty of Medicine, Masarykova Univerzita, Brno, Czech Republic.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/s12859-015-0763-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4625615PMC
October 2015

IGF2 is an actionable target that identifies a distinct subpopulation of colorectal cancer patients with marginal response to anti-EGFR therapies.

Sci Transl Med 2015 Jan;7(272):272ra12

Department of Oncology, University of Torino Medical School, 10060 Candiolo, Torino, Italy. Translational Cancer Medicine, Candiolo Cancer Institute-Fondazione del Piemonte per l'Oncologia (FPO) Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 10060 Candiolo, Torino, Italy. National Institute of Biostructures and Biosystems, 00136 Rome, Italy.

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http://dx.doi.org/10.1126/scitranslmed.3010445DOI Listing
January 2015

Test of four colon cancer risk-scores in formalin fixed paraffin embedded microarray gene expression data.

J Natl Cancer Inst 2014 Oct 22;106(10). Epub 2014 Sep 22.

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland (AFDN, SR, VP, PW, EB, MD); Digestive Oncology Unit and Center for Human Genetics, University Hospital Gasthuisberg, Leuven, Belgium (ST); Department of Pathology, Lausanne University, Lausanne, Switzerland (PY, FB); Oncology Research Unit, Worldwide Research and Development, Pfizer Inc., La Jolla, CA (TX, HE, AP, MM, EM, WS); Oncosurgery, Geneva University Hospital Geneva, Switzerland (AR); SAKK Coordination Center, Bern, Switzerland (AR); Ludwig Center for Cancer Research (MD) and Oncology Department, University of Lausanne, Lausanne, Switzerland (MD).

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http://dx.doi.org/10.1093/jnci/dju247DOI Listing
October 2014

Context-dependent interpretation of the prognostic value of BRAF and KRAS mutations in colorectal cancer.

BMC Cancer 2013 Sep 27;13:439. Epub 2013 Sep 27.

Institute of Biostatistics and Analyses, Masaryk University, Kotlarska 2, Brno, 611 37, Czech Republic.

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http://dx.doi.org/10.1186/1471-2407-13-439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3849526PMC
September 2013

Molecular heterogeneity and centrosome-associated genes in multiple myeloma.

Leuk Lymphoma 2013 Sep 18;54(9):1982-8. Epub 2013 Feb 18.

Babak Myeloma Group, Department of Pathological Physiology, Faculty of Medicine, Masaryk University, Brno, Czech Republic.

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http://dx.doi.org/10.3109/10428194.2013.764416DOI Listing
September 2013

Identification of a poor-prognosis BRAF-mutant-like population of patients with colon cancer.

J Clin Oncol 2012 Apr 5;30(12):1288-95. Epub 2012 Mar 5.

Bioinformatics Core Facility, Swiss Institute of Bioinformatics, Quartier Sorge, Genopode, CH-1015 Lausanne, Switzerland.

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http://ascopubs.org/doi/10.1200/JCO.2011.39.5814
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http://dx.doi.org/10.1200/JCO.2011.39.5814DOI Listing
April 2012

Rgtsp: a generalized top scoring pairs package for class prediction.

Bioinformatics 2011 Jun 19;27(12):1729-30. Epub 2011 Apr 19.

Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btr233DOI Listing
June 2011

A distinct expression of various gene subsets in CD34+ cells from patients with early and advanced myelodysplastic syndrome.

Leuk Res 2010 Dec 29;34(12):1566-72. Epub 2010 Mar 29.

Institute of Hematology and Blood Transfusion, Prague, Czech Republic.

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https://linkinghub.elsevier.com/retrieve/pii/S01452126100010
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http://dx.doi.org/10.1016/j.leukres.2010.02.021DOI Listing
December 2010

Unraveling an FNR based regulatory circuit in Paracoccus denitrificans using a proteomics-based approach.

Biochim Biophys Acta 2010 Jun 29;1804(6):1350-8. Epub 2010 Jan 29.

Department of Biochemistry, Faculty of Science, Masaryk University, 61137 Brno, Czech Republic.

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http://dx.doi.org/10.1016/j.bbapap.2010.01.016DOI Listing
June 2010

Bullous pemphigoid and internal diseases - A case-control study.

Eur J Dermatol 2010 Jan-Feb;20(1):96-101. Epub 2009 Oct 2.

Ist Department of Dermatovenereology, Masaryk University, St. Anna Faculty Hospital, 656 91, Brno, Czech Republic.

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http://dx.doi.org/10.1684/ejd.2010.0805DOI Listing
April 2010

When one chip is not enough: augmenting the validity of SELDI-TOF proteomic profiles of clinical specimens.

Lab Chip 2009 Apr 15;9(7):1014-7. Epub 2009 Jan 15.

Department of Laboratory Medicine, Masaryk Memorial Cancer Institute, Brno, Czech Republic.

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http://dx.doi.org/10.1039/b815503hDOI Listing
April 2009

MSMAD: a computationally efficient method for the analysis of noisy array CGH data.

Bioinformatics 2009 Mar 15;25(6):703-13. Epub 2009 Jan 15.

Institute of Biostatistics and Analyses, Masaryk University, Kamenice 126/3, 625 00 Brno, Czech Republic.

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http://dx.doi.org/10.1093/bioinformatics/btp022DOI Listing
March 2009

aro mutations in Salmonella enterica cause defects in cell wall and outer membrane integrity.

J Bacteriol 2008 May 29;190(9):3155-60. Epub 2008 Feb 29.

Veterinary Research Institute, Hudcova 70, 621 00 Brno, Czech Republic.

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http://dx.doi.org/10.1128/JB.00053-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2347392PMC
May 2008

Screening of genomic imbalances in glioblastoma multiforme using high-resolution comparative genomic hybridization.

Oncol Rep 2007 Feb;17(2):457-64

Department of Genetics and Molecular Biology, Institute of Experimental Biology, Faculty of Science, Masaryk University, and Department of Medical Genetics, University Hospital, Brno, Czech Republic.

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February 2007