Eugenia Giannopoulou

Eugenia Giannopoulou

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Eugenia Giannopoulou

Eugenia Giannopoulou

Publications by authors named "Eugenia Giannopoulou"

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32Publications

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Insights into rheumatic diseases from next-generation sequencing.

Nat Rev Rheumatol 2019 Apr 18. Epub 2019 Apr 18.

Arthritis and Tissue Degeneration Program, Hospital for Special Surgery, New York, NY, USA.

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http://dx.doi.org/10.1038/s41584-019-0217-7DOI Listing
April 2019

Bone protection by inhibition of microRNA-182.

Nat Commun 2018 10 5;9(1):4108. Epub 2018 Oct 5.

Arthritis and Tissue Degeneration Program, The David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, 10021, NY, USA.

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http://dx.doi.org/10.1038/s41467-018-06446-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173760PMC
October 2018

Systematic Discovery of Chromatin-Bound Protein Complexes from ChIP-seq Datasets.

Methods Mol Biol 2017 ;1507:43-58

HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine and Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA.

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http://dx.doi.org/10.1007/978-1-4939-6518-2_4DOI Listing
January 2018

Type I interferons and the cytokine TNF cooperatively reprogram the macrophage epigenome to promote inflammatory activation.

Nat Immunol 2017 Oct 21;18(10):1104-1116. Epub 2017 Aug 21.

Arthritis and Tissue Degeneration Program and the David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, New York, USA.

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http://dx.doi.org/10.1038/ni.3818DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605457PMC
October 2017

Tumor Necrosis Factor dynamically regulates the mRNA stabilome in rheumatoid arthritis fibroblast-like synoviocytes.

PLoS One 2017 14;12(7):e0179762. Epub 2017 Jul 14.

Arthritis and Tissue Degeneration Program and David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0179762PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5510804PMC
September 2017

Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF.

Immunity 2017 08;47(2):235-250.e4

Graduate Program in Immunology and Microbial Pathogenesis, Weill Cornell Graduate School of Medical Sciences, New York, NY 10021, USA; Arthritis and Tissue Degeneration Program and the David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY 10021, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2017.07.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568089PMC
August 2017

MYC-dependent oxidative metabolism regulates osteoclastogenesis via nuclear receptor ERRα.

J Clin Invest 2017 Jun 22;127(7):2555-2568. Epub 2017 May 22.

Arthritis and Tissue Degeneration Program, David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, New York, USA.

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http://dx.doi.org/10.1172/JCI89935DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5490751PMC
June 2017

IFN-γ Induces Histone 3 Lysine 27 Trimethylation in a Small Subset of Promoters to Stably Silence Gene Expression in Human Macrophages.

Cell Rep 2016 09;16(12):3121-3129

Arthritis and Tissue Degeneration Program and David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY 10021, USA; Department of Medicine, Weill Cornell Medical College and Graduate Program in Immunology and Microbial Pathogenesis, Weill Cornell Graduate School of Medical Sciences, New York, NY 10065, USA. Electronic address:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5079287PMC
http://dx.doi.org/10.1016/j.celrep.2016.08.051DOI Listing
September 2016

Regulation of Effector Treg Cells in Murine Lupus.

Arthritis Rheumatol 2016 06;68(6):1454-66

Hospital for Special Surgery, Weill Cornell Graduate School of Medical Sciences, and Weill Cornell Medicine, Cornell University, New York, New York.

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http://dx.doi.org/10.1002/art.39599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5825185PMC
June 2016

Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation.

Nat Immunol 2015 Aug 29;16(8):838-849. Epub 2015 Jun 29.

Graduate Program in Immunology and Microbial Pathogenesis, Weill Cornell Graduate School of Medical Sciences, New York, NY 10021.

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http://dx.doi.org/10.1038/ni.3205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4509841PMC
August 2015

Use of RNA sequencing to evaluate rheumatic disease patients.

Arthritis Res Ther 2015 Jul 1;17:167. Epub 2015 Jul 1.

Arthritis and Tissue Degeneration Program and the David Z Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY, 10021, USA.

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http://dx.doi.org/10.1186/s13075-015-0677-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4488125PMC
July 2015

The chromatin Remodeler CHD8 is required for activation of progesterone receptor-dependent enhancers.

PLoS Genet 2015 Apr 20;11(4):e1005174. Epub 2015 Apr 20.

Molecular Biology Department, Centro Andaluz de Biología Molecular y Medicina Regenerativa (CABIMER), Consejo Superior de Investigaciones Científicas (CSIC), Seville, Spain.

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http://dx.doi.org/10.1371/journal.pgen.1005174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4403880PMC
April 2015

Inhibition of osteoclastogenesis and inflammatory bone resorption by targeting BET proteins and epigenetic regulation.

Nat Commun 2014 Nov 13;5:5418. Epub 2014 Nov 13.

1] Arthritis and Tissue Degeneration Program and David C. Rosensweig Center for Genomics Research, Hospital for Special Surgery, New York, New York 10021, USA [2] Department of Medicine, Weill Cornell Medical College, New York, New York 10021, USA [3] Graduate Program in Immunology and Microbial Pathogenesis, Weill Cornell Graduate School of Medical Sciences, New York, New York 10021, USA.

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http://dx.doi.org/10.1038/ncomms6418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249944PMC
November 2014

The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer.

Nat Commun 2014 Nov 21;5:5383. Epub 2014 Nov 21.

1] Department of Pathology and Laboratory Medicine, Weill Medical College of Cornell University, 413 East 69th Street, Room 1402, New York, New York 10021, USA [2] Institute for Precision Medicine, Weill Medical College of Cornell University and New York Presbyterian Hospital, New York, New York 10021, USA.

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http://dx.doi.org/10.1038/ncomms6383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4241506PMC
November 2014

Modulation of TNF-induced macrophage polarization by synovial fibroblasts.

J Immunol 2014 Sep 23;193(5):2373-83. Epub 2014 Jul 23.

Arthritis and Tissue Degeneration Program and the David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY 10021; Department of Medicine, Weill Cornell Medical College, New York, NY 10021; and Weill Cornell Graduate School of Medical Sciences, New York, NY 10021.

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http://dx.doi.org/10.4049/jimmunol.1400486DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4135020PMC
September 2014

Synergistic activation of inflammatory cytokine genes by interferon-γ-induced chromatin remodeling and toll-like receptor signaling.

Immunity 2013 Sep 5;39(3):454-69. Epub 2013 Sep 5.

Arthritis and Tissue Degeneration Program and Genomics Center, Hospital for Special Surgery, New York, NY 10021, USA.

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http://dx.doi.org/10.1016/j.immuni.2013.08.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3857147PMC
September 2013

Inferring chromatin-bound protein complexes from genome-wide binding assays.

Genome Res 2013 Aug 3;23(8):1295-306. Epub 2013 Apr 3.

HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medical College, Cornell University, New York, New York 10021, USA.

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http://dx.doi.org/10.1101/gr.149419.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3730103PMC
August 2013

Pharmacoproteomic study of the natural product Ebenfuran III in DU-145 prostate cancer cells: the quantitative and temporal interrogation of chemically induced cell death at the protein level.

J Proteome Res 2013 Apr 12;12(4):1591-603. Epub 2013 Mar 12.

Institute for Life Sciences, ‡Cancer Sciences Unit, Cancer Research U.K., Faculty of Medicine, University of Southampton , Southampton, United Kingdom.

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http://dx.doi.org/10.1021/pr300968qDOI Listing
April 2013

Epigenomic alterations in localized and advanced prostate cancer.

Neoplasia 2013 Apr;15(4):373-83

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY 10065, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3612910PMC
April 2013

NFIB is a governor of epithelial-melanocyte stem cell behaviour in a shared niche.

Nature 2013 Mar 6;495(7439):98-102. Epub 2013 Feb 6.

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, New York 10065, USA.

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http://dx.doi.org/10.1038/nature11847DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3635831PMC
March 2013

An integrated ChIP-seq analysis platform with customizable workflows.

BMC Bioinformatics 2011 Jul 7;12:277. Epub 2011 Jul 7.

HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medical College, 1305 York Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1186/1471-2105-12-277DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3145611PMC
July 2011

Visualizing meta-features in proteomic maps.

BMC Bioinformatics 2011 Jul 28;12:308. Epub 2011 Jul 28.

HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medical College, 1305 York Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1186/1471-2105-12-308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176264PMC
July 2011

Proteomic feature maps: a new visualization approach in proteomics analysis.

J Biomed Inform 2009 Aug 4;42(4):644-53. Epub 2009 Feb 4.

Department of Computer Science and Technology, University of Peloponnese, Tripolis, Greece.

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http://dx.doi.org/10.1016/j.jbi.2009.01.007DOI Listing
August 2009