Etienne Ruppé

Etienne Ruppé

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Etienne Ruppé

Publications by authors named "Etienne Ruppé"

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Structure-based classification of class A beta-lactamases, an update.

Curr Res Transl Med 2019 May 31. Epub 2019 May 31.

Laboratoire Universitaire de Biodiversité et d'Ecologie Microbienne, 6 Rue de l'Université, Quimper, France.

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http://dx.doi.org/10.1016/j.retram.2019.05.003DOI Listing
May 2019

Messages from the third International Conference on Clinical Metagenomics (ICCMg3).

Microbes Infect 2019 Mar 2. Epub 2019 Mar 2.

Bacteriology and Genomics Research Laboratories, Division of Infectious Diseases, Geneva University Hospitals and Geneva University, 4 rue Gabrielle-Perret-Gentil, 1205, Geneva, Switzerland.

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http://dx.doi.org/10.1016/j.micinf.2019.02.004DOI Listing
March 2019

Molecular characterization of fluoroquinolones, macrolides, and imipenem resistance in Haemophilus influenzae: analysis of the mutations in QRDRs and assessment of the extent of the AcrAB-TolC-mediated resistance.

Eur J Clin Microbiol Infect Dis 2018 Nov 25;37(11):2201-2210. Epub 2018 Aug 25.

Bacteriology Laboratory, Service of Laboratory Medicine, Department of Genetics, Laboratory Medicine and Pathology, Geneva University Hospitals, 4 rue Gabrielle-Perret-Gentil, 1205, Geneva, Switzerland.

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http://dx.doi.org/10.1007/s10096-018-3362-zDOI Listing
November 2018

Focus on sepsis: new concepts and findings in sepsis care.

Intensive Care Med 2018 11 10;44(11):1997-1999. Epub 2018 Oct 10.

Intensive Care Department, Vall d'Hebron University Hospital, Barcelona, Spain.

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http://dx.doi.org/10.1007/s00134-018-5406-3DOI Listing
November 2018

The gut microbiota of critically ill patients: first steps in an unexplored world.

Intensive Care Med 2018 09 14;44(9):1561-1564. Epub 2018 Jul 14.

Service de Médecine Intensive et Réanimation, Hôpital de la Source, Centre Hospitalier Régional d'Orléans, Orléans, France.

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http://dx.doi.org/10.1007/s00134-018-5309-3DOI Listing
September 2018

Antimicrobials: a global alliance for optimizing their rational use in intra-abdominal infections (AGORA).

Authors:
Massimo Sartelli Dieter G Weber Etienne Ruppé Matteo Bassetti Brian J Wright Luca Ansaloni Fausto Catena Federico Coccolini Fikri M Abu-Zidan Raul Coimbra Ernest E Moore Frederick A Moore Ronald V Maier Jan J De Waele Andrew W Kirkpatrick Ewen A Griffiths Christian Eckmann Adrian J Brink John E Mazuski Addison K May Rob G Sawyer Dominik Mertz Philippe Montravers Anand Kumar Jason A Roberts Jean-Louis Vincent Richard R Watkins Warren Lowman Brad Spellberg Iain J Abbott Abdulrashid Kayode Adesunkanmi Sara Al-Dahir Majdi N Al-Hasan Ferdinando Agresta Asma A Althani Shamshul Ansari Rashid Ansumana Goran Augustin Miklosh Bala Zsolt J Balogh Oussama Baraket Aneel Bhangu Marcelo A Beltrán Michael Bernhard Walter L Biffl Marja A Boermeester Stephen M Brecher Jill R Cherry-Bukowiec Otmar R Buyne Miguel A Cainzos Kelly A Cairns Adrian Camacho-Ortiz Sujith J Chandy Asri Che Jusoh Alain Chichom-Mefire Caroline Colijn Francesco Corcione Yunfeng Cui Daniel Curcio Samir Delibegovic Zaza Demetrashvili Belinda De Simone Sameer Dhingra José J Diaz Isidoro Di Carlo Angel Dillip Salomone Di Saverio Michael P Doyle Gereltuya Dorj Agron Dogjani Hervé Dupont Soumitra R Eachempati Mushira Abdulaziz Enani Valery N Egiev Mutasim M Elmangory Paula Ferrada Joseph R Fitchett Gustavo P Fraga Nathalie Guessennd Helen Giamarellou Wagih Ghnnam George Gkiokas Staphanie R Goldberg Carlos Augusto Gomes Harumi Gomi Manuel Guzmán-Blanco Mainul Haque Sonja Hansen Andreas Hecker Wolfgang R Heizmann Torsten Herzog Adrien Montcho Hodonou Suk-Kyung Hong Reinhold Kafka-Ritsch Lewis J Kaplan Garima Kapoor Aleksandar Karamarkovic Martin G Kees Jakub Kenig Ronald Kiguba Peter K Kim Yoram Kluger Vladimir Khokha Kaoru Koike Kenneth Y Y Kok Victory Kong Matthew C Knox Kenji Inaba Arda Isik Katia Iskandar Rao R Ivatury Maurizio Labbate Francesco M Labricciosa Pierre-François Laterre Rifat Latifi Jae Gil Lee Young Ran Lee Marc Leone Ari Leppaniemi Yousheng Li Stephen Y Liang Tonny Loho Marc Maegele Sydney Malama Hany E Marei Ignacio Martin-Loeches Sanjay Marwah Amos Massele Michael McFarlane Renato Bessa Melo Ionut Negoi David P Nicolau Carl Erik Nord Richard Ofori-Asenso AbdelKarim H Omari Carlos A Ordonez Mouaqit Ouadii Gerson Alves Pereira Júnior Diego Piazza Guntars Pupelis Timothy Miles Rawson Miran Rems Sandro Rizoli Claudio Rocha Boris Sakakushev Miguel Sanchez-Garcia Norio Sato Helmut A Segovia Lohse Gabriele Sganga Boonying Siribumrungwong Vishal G Shelat Kjetil Soreide Rodolfo Soto Peep Talving Jonathan V Tilsed Jean-Francois Timsit Gabriel Trueba Ngo Tat Trung Jan Ulrych Harry van Goor Andras Vereczkei Ravinder S Vohra Imtiaz Wani Waldemar Uhl Yonghong Xiao Kuo-Ching Yuan Sanoop K Zachariah Jean-Ralph Zahar Tanya L Zakrison Antonio Corcione Rita M Melotti Claudio Viscoli Perluigi Viale

World J Emerg Surg 2016 15;11:33. Epub 2016 Jul 15.

Infectious Diseases Unit, Department of Medical and Surgical Sciences, Sant' Orsola Hospital, University of Bologna, Bologna, Italy.

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http://dx.doi.org/10.1186/s13017-016-0089-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4946132PMC
May 2018

Digestive tract colonization by multidrug-resistant Enterobacteriaceae in travellers: An update.

Travel Med Infect Dis 2018 Jan - Feb;21:28-35. Epub 2017 Nov 17.

AP-HP, Hôpital Bichat, Laboratoire de Bactériologie, INSERM, IAME, UMR 1137 and Université Paris Diderot, Sorbonne Paris Cité, F-75018 Paris, France.

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http://dx.doi.org/10.1016/j.tmaid.2017.11.007DOI Listing
May 2018

Messages from the second International Conference on Clinical Metagenomics (ICCMg2).

Microbes Infect 2018 04 8;20(4):222-227. Epub 2018 Mar 8.

Bacteriology Laboratory, Service of Laboratory Medicine, Department of Genetics and Laboratory Medicine, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1205, Geneva, Switzerland.

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http://dx.doi.org/10.1016/j.micinf.2018.02.005DOI Listing
April 2018

Clinical Metagenomics for the Diagnosis of Hospital-acquired Infections: Promises and Hurdles.

Am J Respir Crit Care Med 2017 12;196(12):1617-1618

1 Geneva University Hospitals Geneva, Switzerland.

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http://dx.doi.org/10.1164/rccm.201705-0983LEDOI Listing
December 2017

Establishing Genotype-to-Phenotype Relationships in Bacteria Causing Hospital-Acquired Pneumonia: A Prelude to the Application of Clinical Metagenomics.

Antibiotics (Basel) 2017 Nov 29;6(4). Epub 2017 Nov 29.

Genomic Research Laboratory, Geneva University Hospitals, CMU-9F, Rue Michel Servet 1, CH-1211 Geneva 14, Switzerland.

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http://dx.doi.org/10.3390/antibiotics6040030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5745473PMC
November 2017

Messages from the first International Conference on Clinical Metagenomics (ICCMg).

Microbes Infect 2017 Apr - May;19(4-5):223-228. Epub 2017 Feb 1.

Genomic Research Laboratory, Service of Infectious Diseases, Geneva University Hospitals, Rue Gabrielle-Perret-Gentil 4, CH-1205 Geneva, Switzerland; Bacteriology Laboratory, Service of Laboratory Medicine, Department of Genetics and Laboratory Medicine, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1205 Geneva, Switzerland.

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http://dx.doi.org/10.1016/j.micinf.2017.01.005DOI Listing
October 2017

Antimicrobial resistance in the next 30 years, humankind, bugs and drugs: a visionary approach.

Intensive Care Med 2017 Oct 21;43(10):1464-1475. Epub 2017 Jul 21.

Ampath National Laboratory Services, Department of Clinical Microbiology, Milpark Hospital, Johannesburg, South Africa.

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http://dx.doi.org/10.1007/s00134-017-4878-xDOI Listing
October 2017

Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing.

Int J Mol Sci 2017 Sep 20;18(9). Epub 2017 Sep 20.

Genomic Research Laboratory, Service of Infectious Diseases, Geneva University Hospitals (HUG), 1205 Geneva, Switzerland.

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http://dx.doi.org/10.3390/ijms18092011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5618659PMC
September 2017

Clinical metagenomics of bone and joint infections: a proof of concept study.

Sci Rep 2017 08 10;7(1):7718. Epub 2017 Aug 10.

Genomic Research Laboratory, Service of Infectious Diseases, Geneva University Hospitals, rue Gabrielle-Perret-Gentil 4, 1205, Geneva, Switzerland.

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http://dx.doi.org/10.1038/s41598-017-07546-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5552814PMC
August 2017

What and how should we tell travellers about antimicrobial resistance?

J Travel Med 2017 03;24(2)

Division of Tropical and Humanitarian Medicine, Geneva University Hospitals, rue Gabrielle-Perret-Gentil 4, Geneva CH-1205, Switzerland.

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http://dx.doi.org/10.1093/jtm/taw089DOI Listing
March 2017

ESBL-producing Enterobacteriaceae in travellers: doctors beware.

Lancet Infect Dis 2017 01 14;17(1):8-9. Epub 2016 Oct 14.

IAME, UMR 1137, INSERM, Paris Diderot University, Sorbonne Paris Cité, Bactériologie Laboratory, Hôpital Bichat, AP-HP, Paris 75013, France. Electronic address:

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http://dx.doi.org/10.1016/S1473-3099(16)30417-0DOI Listing
January 2017

Clinical metagenomics for the management of hospital- and healthcare-acquired pneumonia.

Future Microbiol 2016 2;11(3):427-39. Epub 2016 Mar 2.

Genomic Research Laboratory, Service of Infectious Diseases, Geneva University Hospitals, rue Gabrielle-Perret-Gentil 4, 1205 Geneva, Switzerland.

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http://dx.doi.org/10.2217/fmb.15.144DOI Listing
December 2016

In 2035, will all bacteria be multidrug resistant? We are not sure.

Intensive Care Med 2016 Dec 18;42(12):2021-2023. Epub 2016 Apr 18.

Infection Control Programme, Hôpitaux Universitaires de Genève, Geneva, Switzerland.

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http://dx.doi.org/10.1007/s00134-016-4343-2DOI Listing
December 2016

Hand Hygiene, Cohorting, or Antibiotic Restriction to Control Outbreaks of Multidrug-Resistant Enterobacteriaceae.

Infect Control Hosp Epidemiol 2016 Mar 28;37(3):272-80. Epub 2015 Dec 28.

1INSERM,Infection,Antimicrobials,Modelization,Evolution (IAME),UMR 1137,F-75018 Paris,France.

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http://dx.doi.org/10.1017/ice.2015.284DOI Listing
March 2016

Dissemination of the mcr-1 colistin resistance gene.

Lancet Infect Dis 2016 Mar;16(3):290-1

MGP MetaGénoPolis, INRA, Université Paris-Saclay, 78350 Jouy en Josas, France; Centre of Host Microbiome Interactions, King's college, London, UK.

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http://dx.doi.org/10.1016/S1473-3099(16)00066-9DOI Listing
March 2016

Carriage of Enterobacteria Producing Extended-Spectrum β-Lactamases and Composition of the Gut Microbiota in an Amerindian Community.

Antimicrob Agents Chemother 2016 01 9;60(1):507-14. Epub 2015 Nov 9.

Unidad Mixta de Investigación en Genómica y Salud de la Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunidad Valenciana (FISABIO-Salud Pública) y el Institut Cavanilles de Biodiversitat y Biología Evolutiva (Universitat de València), Valencia, Spain CIBER en Epidemiología y Salud Pública (CIBERESP), Madrid, Spain

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http://dx.doi.org/10.1128/AAC.01528-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704183PMC
January 2016

Mechanisms of antimicrobial resistance in Gram-negative bacilli.

Ann Intensive Care 2015 Dec 12;5(1):61. Epub 2015 Aug 12.

Department of Infectious Diseases, Genomic Research Laboratory, Geneva University Hospitals, Geneva, Switzerland,

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http://dx.doi.org/10.1186/s13613-015-0061-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4531117PMC
December 2015

Reply to Collignon and Kennedy.

Clin Infect Dis 2015 Dec 13;61(11):1767. Epub 2015 Aug 13.

Institut national de la santé et de la recherche médicale (INSERM), Infections, Antimicrobiens, Modélisation, Evolution (IAME), Unité Mixte de Recherche (UMR) 1137 Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité Service des Maladies Infectieuses et Tropicales, AP-HP, Hôpital Bichat, Paris, France.

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http://dx.doi.org/10.1093/cid/civ705DOI Listing
December 2015

High Rate of Acquisition but Short Duration of Carriage of Multidrug-Resistant Enterobacteriaceae After Travel to the Tropics.

Clin Infect Dis 2015 Aug 22;61(4):593-600. Epub 2015 Apr 22.

Institut national de la santé et de la recherche médicale (INSERM), Infection, Antimicrobiens, Modélisation, Evolution (IAME), Unité Mixte de Recherche (UMR) 1137 Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité AP-HP, Hôpital Bichat.

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http://dx.doi.org/10.1093/cid/civ333DOI Listing
August 2015

Causes, consequences, and perspectives in the variations of intestinal density of colonization of multidrug-resistant enterobacteria.

Front Microbiol 2013 28;4:129. Epub 2013 May 28.

Laboratoire de Bactériologie, AP-HP, Hôpitaux Paris Nord Val de Seine site Bichat-Claude Bernard, Paris, France.

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http://dx.doi.org/10.3389/fmicb.2013.00129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664761PMC
June 2013

Duration of colonization by extended-spectrum β-lactamase-producing Enterobacteriaceae after hospital discharge.

Am J Infect Control 2013 May 19;41(5):443-7. Epub 2012 Sep 19.

Infection Control Unit, Bichat-Claude Bernard Hospital, Paris, France.

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http://dx.doi.org/10.1016/j.ajic.2012.05.015DOI Listing
May 2013

Time-to-positivity-based discrimination between Enterobacteriaceae, Pseudomonas aeruginosa and strictly anaerobic Gram-negative bacilli in aerobic and anaerobic blood culture vials.

J Microbiol Methods 2013 May 28;93(2):77-9. Epub 2013 Feb 28.

Bacteriology Laboratory, Bichat-Claude Bernard Hospital, Assistance Publique - Hôpitaux de Paris (AP-HP), 46 rue Henri Huchard, 75877 Paris Cedex 18, France.

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http://dx.doi.org/10.1016/j.mimet.2013.02.005DOI Listing
May 2013

Emergence of imipenem-resistant gram-negative bacilli in intestinal flora of intensive care patients.

Antimicrob Agents Chemother 2013 Mar 14;57(3):1488-95. Epub 2013 Jan 14.

French National Reference Center for Bacterial Resistance in Commensal Flora, Laboratory of Bacteriology, Bichat-Claude Bernard Hospital, Assistance Publique-Hôpitaux de Paris, Paris, France.

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http://dx.doi.org/10.1128/AAC.01823-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591916PMC
March 2013

Evolution of nasal carriage of methicillin-resistant coagulase-negative staphylococci in a remote population.

Antimicrob Agents Chemother 2012 Jan 7;56(1):315-23. Epub 2011 Nov 7.

Bacteriology Unit and French National Reference Center for Bacterial Resistance in Commensal Flora, Diderot-Paris 7 University and Bichat-Claude Bernard Teaching Hospital (Assistance Publique—Hôpitaux de Paris), Paris, France.

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http://dx.doi.org/10.1128/AAC.00547-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3256065PMC
January 2012

High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis.

J Antimicrob Chemother 2011 Jan 9;66(1):29-36. Epub 2010 Nov 9.

Bacteriology Unit and National Reference Center for Emergence of Resistance in Commensal Flora, Bichat-Claude Bernard Hospital (Assistance Publique-Hôpitaux de Paris), Paris, France.

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http://dx.doi.org/10.1093/jac/dkq410DOI Listing
January 2011

Independent behavior of commensal flora for carriage of fluoroquinolone-resistant bacteria in patients at admission.

Antimicrob Agents Chemother 2010 Dec 27;54(12):5193-200. Epub 2010 Sep 27.

Department of Internal Medicine, Hôpital Beaujon, Assistance-Publique Hôpitaux de Paris, 100 Boulevard Général Leclerc, 92100 Clichy, France.

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http://dx.doi.org/10.1128/AAC.00823-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2981286PMC
December 2010

Emergence and dissemination of extended-spectrum beta-lactamase-producing Escherichia coli in the community: lessons from the study of a remote and controlled population.

J Infect Dis 2010 Aug;202(4):515-23

Equipe d'Accueil (EA) 3964 Université Paris-Diderot and Centre National de Référence, Résistance bactérienne dans les flores commensales, Hôpital Bichat-Claude Bernard, Assistance Publique-Hôpitaux de Paris (AP-HP), Paris, France.

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http://dx.doi.org/10.1086/654883DOI Listing
August 2010

Is exposure to mercury a driving force for the carriage of antibiotic resistance genes?

J Med Microbiol 2010 Jul 25;59(Pt 7):804-7. Epub 2010 Mar 25.

EA3964 Résistance Bactérienne in Vivo, Faculté de Médecine, Université Paris-Diderot and Hôpital Bichat-Claude Bernard, CNR Résistance Bactérienne dans les Flores Commensales, APHP, 75018 Paris, France.

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http://dx.doi.org/10.1099/jmm.0.017665-0DOI Listing
July 2010

Methicillin-resistant coagulase-negative staphylococci in the community: high homology of SCCmec IVa between Staphylococcus epidermidis and major clones of methicillin-resistant Staphylococcus aureus.

J Infect Dis 2010 Jul;202(2):270-81

Bacteriology Unit and National Reference Center for Emergence of Resistance in Commensal Flora, 2EA 3964, Bichat-Claude Bernard Hospital, Assistance Publique-Hôpitaux de Paris and Xavier Bichat Medical School, Denis Diderot-Paris 7 University, Paris, France.

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http://dx.doi.org/10.1086/653483DOI Listing
July 2010

Comparisons between geographically diverse samples of carried Staphylococcus aureus.

J Bacteriol 2009 Sep 10;191(18):5577-83. Epub 2009 Jul 10.

Laboratoire Associé Centre National de Référence Résistance dans les Flores Commensales, Hôpital Bichat-Claude Bernard (AP-HP), 75018 Paris, France.

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http://dx.doi.org/10.1128/JB.00493-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2737961PMC
September 2009

Carriage of CTX-M-15-producing Escherichia coli isolates among children living in a remote village in Senegal.

Antimicrob Agents Chemother 2009 Jul 13;53(7):3135-7. Epub 2009 Apr 13.

University Paris-Diderot Medical School and Associated National Reference Center for Antibiotic Resistance in Commensal Flora, Laboratoire de Bactériologie, Hôpital Bichat-Claude Bernard, 46 Rue Henri Huchard, Paris, France.

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http://dx.doi.org/10.1128/AAC.00139-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704652PMC
July 2009

First detection of the Ambler class C 1 AmpC beta-lactamase in Citrobacter freundii by a new, simple double-disk synergy test.

J Clin Microbiol 2006 Nov 13;44(11):4204-7. Epub 2006 Sep 13.

Université Paris VII, UFR Médicale, EA 3105, Laboratoire d'Etudes de Génétique Bactérienne dans les Infections de l'Enfant, Assistance Publique-Hôpitaux de Paris, Service de Microbiologie, Hôpital Robert Debré, Paris, France.

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http://dx.doi.org/10.1128/JCM.00918-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1698308PMC
November 2006