Publications by authors named "Etienne Patin"

71Publications

Plague as a cause for familial Mediterranean fever.

Authors:
Etienne Patin

Nat Immunol 2020 08;21(8):833-834

Human Evolutionary Genetics Unit, Institut Pasteur, UMR 2000, CNRS, Paris, France.

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http://dx.doi.org/10.1038/s41590-020-0724-3DOI Listing
August 2020

Two common disease-associated TYK2 variants impact exon splicing and TYK2 dosage.

PLoS One 2020 21;15(1):e0225289. Epub 2020 Jan 21.

Unit of Cytokine Signaling, Institut Pasteur, INSERM U1221, Paris, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0225289PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6974145PMC
March 2020

Associations of autozygosity with a broad range of human phenotypes.

Authors:
David W Clark Yukinori Okada Kristjan H S Moore Dan Mason Nicola Pirastu Ilaria Gandin Hannele Mattsson Catriona L K Barnes Kuang Lin Jing Hua Zhao Patrick Deelen Rebecca Rohde Claudia Schurmann Xiuqing Guo Franco Giulianini Weihua Zhang Carolina Medina-Gomez Robert Karlsson Yanchun Bao Traci M Bartz Clemens Baumbach Ginevra Biino Matthew J Bixley Marco Brumat Jin-Fang Chai Tanguy Corre Diana L Cousminer Annelot M Dekker David A Eccles Kristel R van Eijk Christian Fuchsberger He Gao Marine Germain Scott D Gordon Hugoline G de Haan Sarah E Harris Edith Hofer Alicia Huerta-Chagoya Catherine Igartua Iris E Jansen Yucheng Jia Tim Kacprowski Torgny Karlsson Marcus E Kleber Shengchao Alfred Li Ruifang Li-Gao Anubha Mahajan Koichi Matsuda Karina Meidtner Weihua Meng May E Montasser Peter J van der Most Matthias Munz Teresa Nutile Teemu Palviainen Gauri Prasad Rashmi B Prasad Tallapragada Divya Sri Priyanka Federica Rizzi Erika Salvi Bishwa R Sapkota Daniel Shriner Line Skotte Melissa C Smart Albert Vernon Smith Ashley van der Spek Cassandra N Spracklen Rona J Strawbridge Salman M Tajuddin Stella Trompet Constance Turman Niek Verweij Clara Viberti Lihua Wang Helen R Warren Robyn E Wootton Lisa R Yanek Jie Yao Noha A Yousri Wei Zhao Adebowale A Adeyemo Saima Afaq Carlos Alberto Aguilar-Salinas Masato Akiyama Matthew L Albert Matthew A Allison Maris Alver Tin Aung Fereidoun Azizi Amy R Bentley Heiner Boeing Eric Boerwinkle Judith B Borja Gert J de Borst Erwin P Bottinger Linda Broer Harry Campbell Stephen Chanock Miao-Li Chee Guanjie Chen Yii-Der I Chen Zhengming Chen Yen-Feng Chiu Massimiliano Cocca Francis S Collins Maria Pina Concas Janie Corley Giovanni Cugliari Rob M van Dam Anna Damulina Maryam S Daneshpour Felix R Day Graciela E Delgado Klodian Dhana Alexander S F Doney Marcus Dörr Ayo P Doumatey Nduna Dzimiri S Sunna Ebenesersdóttir Joshua Elliott Paul Elliott Ralf Ewert Janine F Felix Krista Fischer Barry I Freedman Giorgia Girotto Anuj Goel Martin Gögele Mark O Goodarzi Mariaelisa Graff Einat Granot-Hershkovitz Francine Grodstein Simonetta Guarrera Daniel F Gudbjartsson Kamran Guity Bjarni Gunnarsson Yu Guo Saskia P Hagenaars Christopher A Haiman Avner Halevy Tamara B Harris Mehdi Hedayati David A van Heel Makoto Hirata Imo Höfer Chao Agnes Hsiung Jinyan Huang Yi-Jen Hung M Arfan Ikram Anuradha Jagadeesan Pekka Jousilahti Yoichiro Kamatani Masahiro Kanai Nicola D Kerrison Thorsten Kessler Kay-Tee Khaw Chiea Chuen Khor Dominique P V de Kleijn Woon-Puay Koh Ivana Kolcic Peter Kraft Bernhard K Krämer Zoltán Kutalik Johanna Kuusisto Claudia Langenberg Lenore J Launer Deborah A Lawlor I-Te Lee Wen-Jane Lee Markus M Lerch Liming Li Jianjun Liu Marie Loh Stephanie J London Stephanie Loomis Yingchang Lu Jian'an Luan Reedik Mägi Ani W Manichaikul Paolo Manunta Gísli Másson Nana Matoba Xue W Mei Christa Meisinger Thomas Meitinger Massimo Mezzavilla Lili Milani Iona Y Millwood Yukihide Momozawa Amy Moore Pierre-Emmanuel Morange Hortensia Moreno-Macías Trevor A Mori Alanna C Morrison Taulant Muka Yoshinori Murakami Alison D Murray Renée de Mutsert Josyf C Mychaleckyj Mike A Nalls Matthias Nauck Matt J Neville Ilja M Nolte Ken K Ong Lorena Orozco Sandosh Padmanabhan Gunnar Pálsson James S Pankow Cristian Pattaro Alison Pattie Ozren Polasek Neil Poulter Peter P Pramstaller Lluis Quintana-Murci Katri Räikkönen Sarju Ralhan Dabeeru C Rao Wouter van Rheenen Stephen S Rich Paul M Ridker Cornelius A Rietveld Antonietta Robino Frank J A van Rooij Daniela Ruggiero Yasaman Saba Charumathi Sabanayagam Maria Sabater-Lleal Cinzia Felicita Sala Veikko Salomaa Kevin Sandow Helena Schmidt Laura J Scott William R Scott Bahareh Sedaghati-Khayat Bengt Sennblad Jessica van Setten Peter J Sever Wayne H-H Sheu Yuan Shi Smeeta Shrestha Sharvari Rahul Shukla Jon K Sigurdsson Timo Tonis Sikka Jai Rup Singh Blair H Smith Alena Stančáková Alice Stanton John M Starr Lilja Stefansdottir Leon Straker Patrick Sulem Gardar Sveinbjornsson Morris A Swertz Adele M Taylor Kent D Taylor Natalie Terzikhan Yih-Chung Tham Gudmar Thorleifsson Unnur Thorsteinsdottir Annika Tillander Russell P Tracy Teresa Tusié-Luna Ioanna Tzoulaki Simona Vaccargiu Jagadish Vangipurapu Jan H Veldink Veronique Vitart Uwe Völker Eero Vuoksimaa Salma M Wakil Melanie Waldenberger Gurpreet S Wander Ya Xing Wang Nicholas J Wareham Sarah Wild Chittaranjan S Yajnik Jian-Min Yuan Lingyao Zeng Liang Zhang Jie Zhou Najaf Amin Folkert W Asselbergs Stephan J L Bakker Diane M Becker Benjamin Lehne David A Bennett Leonard H van den Berg Sonja I Berndt Dwaipayan Bharadwaj Lawrence F Bielak Murielle Bochud Mike Boehnke Claude Bouchard Jonathan P Bradfield Jennifer A Brody Archie Campbell Shai Carmi Mark J Caulfield David Cesarini John C Chambers Giriraj Ratan Chandak Ching-Yu Cheng Marina Ciullo Marilyn Cornelis Daniele Cusi George Davey Smith Ian J Deary Rajkumar Dorajoo Cornelia M van Duijn David Ellinghaus Jeanette Erdmann Johan G Eriksson Evangelos Evangelou Michele K Evans Jessica D Faul Bjarke Feenstra Mary Feitosa Sylvain Foisy Andre Franke Yechiel Friedlander Paolo Gasparini Christian Gieger Clicerio Gonzalez Philippe Goyette Struan F A Grant Lyn R Griffiths Leif Groop Vilmundur Gudnason Ulf Gyllensten Hakon Hakonarson Anders Hamsten Pim van der Harst Chew-Kiat Heng Andrew A Hicks Hagit Hochner Heikki Huikuri Steven C Hunt Vincent W V Jaddoe Philip L De Jager Magnus Johannesson Åsa Johansson Jost B Jonas J Wouter Jukema Juhani Junttila Jaakko Kaprio Sharon L R Kardia Fredrik Karpe Meena Kumari Markku Laakso Sander W van der Laan Jari Lahti Matthias Laudes Rodney A Lea Wolfgang Lieb Thomas Lumley Nicholas G Martin Winfried März Giuseppe Matullo Mark I McCarthy Sarah E Medland Tony R Merriman Andres Metspalu Brian F Meyer Karen L Mohlke Grant W Montgomery Dennis Mook-Kanamori Patricia B Munroe Kari E North Dale R Nyholt Jeffery R O'connell Carole Ober Albertine J Oldehinkel Walter Palmas Colin Palmer Gerard G Pasterkamp Etienne Patin Craig E Pennell Louis Perusse Patricia A Peyser Mario Pirastu Tinca J C Polderman David J Porteous Danielle Posthuma Bruce M Psaty John D Rioux Fernando Rivadeneira Charles Rotimi Jerome I Rotter Igor Rudan Hester M Den Ruijter Dharambir K Sanghera Naveed Sattar Reinhold Schmidt Matthias B Schulze Heribert Schunkert Robert A Scott Alan R Shuldiner Xueling Sim Neil Small Jennifer A Smith Nona Sotoodehnia E-Shyong Tai Alexander Teumer Nicholas J Timpson Daniela Toniolo David-Alexandre Tregouet Tiinamaija Tuomi Peter Vollenweider Carol A Wang David R Weir John B Whitfield Cisca Wijmenga Tien-Yin Wong John Wright Jingyun Yang Lei Yu Babette S Zemel Alan B Zonderman Markus Perola Patrik K E Magnusson André G Uitterlinden Jaspal S Kooner Daniel I Chasman Ruth J F Loos Nora Franceschini Lude Franke Chris S Haley Caroline Hayward Robin G Walters John R B Perry Tōnu Esko Agnar Helgason Kari Stefansson Peter K Joshi Michiaki Kubo James F Wilson

Nat Commun 2019 10 31;10(1):4957. Epub 2019 Oct 31.

Centre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, EH8 9AG, Scotland.

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http://dx.doi.org/10.1038/s41467-019-12283-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823371PMC
October 2019

Homozygosity for P1104A underlies tuberculosis in about 1% of patients in a cohort of European ancestry.

Proc Natl Acad Sci U S A 2019 05 8;116(21):10430-10434. Epub 2019 May 8.

Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM UMR 1163, Necker Hospital for Sick Children, 75015 Paris, France.

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http://dx.doi.org/10.1073/pnas.1903561116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6534977PMC
May 2019

Recent Adaptive Acquisition by African Rainforest Hunter-Gatherers of the Late Pleistocene Sickle-Cell Mutation Suggests Past Differences in Malaria Exposure.

Am J Hum Genet 2019 03 28;104(3):553-561. Epub 2019 Feb 28.

Human Evolutionary Genetics Unit, Institut Pasteur, UMR 2000 Centre National de la Recherche Scientifique, Paris 75015, France; Center of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, Paris 75015, France. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00029297193005
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http://dx.doi.org/10.1016/j.ajhg.2019.02.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6407493PMC
March 2019

Tuberculosis and impaired IL-23-dependent IFN-γ immunity in humans homozygous for a common missense variant.

Sci Immunol 2018 12;3(30)

St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY, USA.

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http://immunology.sciencemag.org/lookup/doi/10.1126/sciimmun
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http://dx.doi.org/10.1126/sciimmunol.aau8714DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6341984PMC
December 2018

The demographic and adaptive history of central African hunter-gatherers and farmers.

Curr Opin Genet Dev 2018 12 10;53:90-97. Epub 2018 Aug 10.

Unit of Human Evolutionary Genetics, Department of Genomes and Genetics, Institut Pasteur, 75015 Paris, France; Centre National de la Recherche Scientifique (CNRS), UMR2000, 75015 Paris, France; Center of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, 75015 Paris, France. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S0959437X183006
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http://dx.doi.org/10.1016/j.gde.2018.07.008DOI Listing
December 2018

The Genetic Legacy of the Indian Ocean Slave Trade: Recent Admixture and Post-admixture Selection in the Makranis of Pakistan.

Am J Hum Genet 2017 Dec 9;101(6):977-984. Epub 2017 Nov 9.

Unit of Human Evolutionary Genetics, Department of Genomes & Genetics, Institut Pasteur, Paris 75015, France; Centre National de la Recherche Scientifique URA3012, Paris 75015, France; Center of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, Paris 75015, France. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2017.09.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5812914PMC
December 2017

Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations.

Cell 2016 Oct;167(3):643-656.e17

Human Evolutionary Genetics Unit, Institut Pasteur, Paris 75015, France; CNRS, URA3012, Paris 75015, France; Center of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, Paris 75015, France. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.09.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5075285PMC
October 2016

Extensive Admixture and Selective Pressure Across the Sahel Belt.

Genome Biol Evol 2015 Nov 26;7(12):3484-95. Epub 2015 Nov 26.

Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal Instituto de Patologia e Imunologia Molecular da Universidade do Porto (IPATIMUP), Porto, Portugal Faculdade de Medicina da Universidade do Porto, Porto, Portugal

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http://dx.doi.org/10.1093/gbe/evv236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4700964PMC
November 2015

The human gene damage index as a gene-level approach to prioritizing exome variants.

Proc Natl Acad Sci U S A 2015 Nov 19;112(44):13615-20. Epub 2015 Oct 19.

St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065; Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163, Necker Hospital for Sick Children, 75015 Paris, France; Paris Descartes University, Imagine Institute, 75015 Paris, France; Howard Hughes Medical Institute, New York, NY 10065; Pediatric Hematology-Immunology Unit, Necker Hospital for Sick Children, 75015 Paris, France

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http://dx.doi.org/10.1073/pnas.1518646112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4640721PMC
November 2015

The Milieu Intérieur study - an integrative approach for study of human immunological variance.

Clin Immunol 2015 Apr 3;157(2):277-93. Epub 2015 Jan 3.

Center for Human Immunology, Institut Pasteur, Paris, France; Laboratory of Dendritic Cell Immunobiology, Department of Immunology, Institut Pasteur, Paris, France; INSERM U818, France; INSERM UMS20, France. Electronic address:

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http://dx.doi.org/10.1016/j.clim.2014.12.004DOI Listing
April 2015

Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers.

Proc Natl Acad Sci U S A 2014 09 18;111(35):E3596-603. Epub 2014 Aug 18.

Sainte-Justine Hospital Research Centre, Montreal, QC, Canada H3T 1C5; Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland;

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http://dx.doi.org/10.1073/pnas.1402875111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4156716PMC
September 2014

Exploring the occurrence of classic selective sweeps in humans using whole-genome sequencing data sets.

Mol Biol Evol 2014 Jul 1;31(7):1850-68. Epub 2014 Apr 1.

Institut Pasteur, Human Evolutionary Genetics, Department of Genomes and Genetics, Paris, FranceCentre National de la Recherche Scientifique, URA3012, Paris, France

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http://dx.doi.org/10.1093/molbev/msu118DOI Listing
July 2014

Heterogeneous pattern of selective pressure for PRRT2 in human populations, but no association with autism spectrum disorders.

PLoS One 2014 3;9(3):e88600. Epub 2014 Mar 3.

Human Genetics and Cognitive Functions, Institut Pasteur, Paris, France; CNRS URA 2182 'Genes, synapses and cognition', Institut Pasteur, Paris, France; University Denis Diderot Paris 7, Paris, France; Fondation FondaMental, Créteil, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088600PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3940422PMC
January 2015

A 1,100-year-old founder effect mutation in IL12B gene is responsible for Mendelian susceptibility to mycobacterial disease in Tunisian patients.

Immunogenetics 2014 Jan 15;66(1):67-71. Epub 2013 Oct 15.

Laboratory of Transmission, Control and Immunobiology of Infections (LTCII), Institut Pasteur de Tunis, LR11IPT02, Tunis-Belvédère, 1002, Tunisia.

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http://link.springer.com/10.1007/s00251-013-0739-0
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http://dx.doi.org/10.1007/s00251-013-0739-0DOI Listing
January 2014

Human genetic data reveal contrasting demographic patterns between sedentary and nomadic populations that predate the emergence of farming.

Mol Biol Evol 2013 Dec 24;30(12):2629-44. Epub 2013 Sep 24.

Laboratoire Eco-Anthropologie et Ethnobiologie, UMR 7206, Muséum National d'Histoire Naturelle, Centre National de la Recherche Scientifique, Université Paris 7 Diderot, Paris, France.

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http://dx.doi.org/10.1093/molbev/mst156DOI Listing
December 2013

Positive selection in the chromosome 16 VKORC1 genomic region has contributed to the variability of anticoagulant response in humans.

PLoS One 2012 28;7(12):e53049. Epub 2012 Dec 28.

Inserm UMRS-946, Genetic Variability and Human Diseases, Institut Universitaire d'Hématologie, Université Paris Diderot, Paris, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0053049PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532425PMC
July 2013

The evolutionary landscape of cytosolic microbial sensors in humans.

Am J Hum Genet 2012 Jul 28;91(1):27-37. Epub 2012 Jun 28.

Institut Pasteur, Unit of Human Evolutionary Genetics, Paris, France.

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http://dx.doi.org/10.1016/j.ajhg.2012.05.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397270PMC
July 2012

Evolutionary genetic dissection of human interferons.

J Exp Med 2011 Dec 12;208(13):2747-59. Epub 2011 Dec 12.

Unit of Human Evolutionary Genetics, Department of Genomes and Genetics, Institut Pasteur, F-75015 Paris, France.

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http://dx.doi.org/10.1084/jem.20111680DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244034PMC
December 2011

The selective footprints of viral pressures at the human RIG-I-like receptor family.

Hum Mol Genet 2011 Nov 24;20(22):4462-74. Epub 2011 Aug 24.

Unit of Human Evolutionary Genetics, URA3012, Institut Pasteur, 25-28 Rue du Dr Roux, F-75015 Paris, France.

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http://dx.doi.org/10.1093/hmg/ddr377DOI Listing
November 2011

Evolutionary genetics evidence of an essential, nonredundant role of the IFN-γ pathway in protective immunity.

Hum Mutat 2011 Jun 29;32(6):633-42. Epub 2011 Mar 29.

Institut Pasteur, Human Evolutionary Genetics, Department of Genomes and Genetics, Paris, France.

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http://dx.doi.org/10.1002/humu.21484DOI Listing
June 2011

Evolutionary trajectories of primate genes involved in HIV pathogenesis.

Mol Biol Evol 2009 Dec 2;26(12):2865-75. Epub 2009 Sep 2.

Institute of Microbiology, University Hospital Center and University of Lausanne, Lausanne, Switzerland.

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http://dx.doi.org/10.1093/molbev/msp197DOI Listing
December 2009

Signatures of purifying and local positive selection in human miRNAs.

Am J Hum Genet 2009 Mar 19;84(3):316-27. Epub 2009 Feb 19.

Institut Pasteur, Human Evolutionary Genetics, Centre National pour la Recherche Scientifique, URA3012, Paris, France.

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http://dx.doi.org/10.1016/j.ajhg.2009.01.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2667980PMC
March 2009

Natural selection has driven population differentiation in modern humans.

Nat Genet 2008 Mar 3;40(3):340-5. Epub 2008 Feb 3.

Human Evolutionary Genetics Unit, Centre National de la Recherche Scientifique-Unité de Recherche Associée (CNRS-URA3012), Institut Pasteur, 25 rue Dr. Roux, Paris 75015, France.

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http://dx.doi.org/10.1038/ng.78DOI Listing
March 2008

Demeter's legacy: rapid changes to our genome imposed by diet.

Trends Ecol Evol 2008 Feb 11;23(2):56-9. Epub 2008 Jan 11.

Human Evolutionary Genetics, Centre National de la Recherche Scientifique (CNRS) URA3012, Institut Pasteur, 25 rue Docteur Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1016/j.tree.2007.11.002DOI Listing
February 2008

Population genetic diversity of the NAT2 gene supports a role of acetylation in human adaptation to farming in Central Asia.

Eur J Hum Genet 2008 Feb 28;16(2):243-51. Epub 2007 Nov 28.

Unité d'Eco-Anthropologie et Ethnobiologie, CNRS UMR 5145, Musée de l'Homme, Paris, France.

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http://dx.doi.org/10.1038/sj.ejhg.5201963DOI Listing
February 2008

Evolutionary insights into the high worldwide prevalence of MBL2 deficiency alleles.

Hum Mol Genet 2006 Sep 2;15(17):2650-8. Epub 2006 Aug 2.

CNRS FRE 2849, Unit of Molecular Prevention and Therapy of Human Diseases, Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1093/hmg/ddl193DOI Listing
September 2006

Sub-Saharan African coding sequence variation and haplotype diversity at the NAT2 gene.

Hum Mutat 2006 Jul;27(7):720

Centre National de la Recherche Scientifique (CNRS) FRE 2849, Unit of Molecular Prevention and Therapy of Human Diseases, Institut Pasteur, Paris, France.

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http://www.ibrarian.net/navon/paper/Sub_Saharan_African_codi
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http://doi.wiley.com/10.1002/humu.9438
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http://dx.doi.org/10.1002/humu.9438DOI Listing
July 2006

The heritage of pathogen pressures and ancient demography in the human innate-immunity CD209/CD209L region.

Am J Hum Genet 2005 Nov 29;77(5):869-86. Epub 2005 Sep 29.

Centre National de la Recherche Scientifique FRE 2849, Unit of Molecular Prevention and Therapy of Human Diseases, Institut Pasteur, 25, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1086/497613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1271393PMC
November 2005