Erik L Clarke

Erik L Clarke

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Erik L Clarke

Erik L Clarke

Publications by authors named "Erik L Clarke"

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13Publications

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Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments.

Microbiome 2019 03 22;7(1):46. Epub 2019 Mar 22.

Division of Gastroenterology, Hepatology and Nutrition, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.

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http://dx.doi.org/10.1186/s40168-019-0658-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429786PMC
March 2019

Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit.

Infect Control Hosp Epidemiol 2018 Dec 18:1-7. Epub 2018 Dec 18.

1Pulmonary, Allergy and Critical Care Division, Department of Medicine,University of Pennsylvania Perelman School of Medicine,Philadelphia, Pennsylvania.

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https://www.cambridge.org/core/product/identifier/S0899823X1
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http://dx.doi.org/10.1017/ice.2018.319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581638PMC
December 2018

swga: a primer design toolkit for selective whole genome amplification.

Bioinformatics 2017 Jul;33(14):2071-2077

Department of Biology, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870857PMC
July 2017

A task-based approach for Gene Ontology evaluation.

J Biomed Semantics 2013 Apr 15;4 Suppl 1:S4. Epub 2013 Apr 15.

The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1186/2041-1480-4-S1-S4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633003PMC
April 2013

Building a biomedical semantic network in Wikipedia with Semantic Wiki Links.

Database (Oxford) 2012 20;2012:bar060. Epub 2012 Mar 20.

The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/database/bar060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308151PMC
June 2012

Linking genes to diseases with a SNPedia-Gene Wiki mashup.

J Biomed Semantics 2012 Apr 24;3 Suppl 1:S6. Epub 2012 Apr 24.

The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1186/2041-1480-3-S1-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337266PMC
April 2012

The Gene Wiki in 2011: community intelligence applied to human gene annotation.

Nucleic Acids Res 2012 Jan 10;40(Database issue):D1255-61. Epub 2011 Nov 10.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/nar/gkr925DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245148PMC
January 2012