Publications by authors named "Erik Dassi"

31Publications

Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications.

Front Genet 2020 11;11:630360. Epub 2020 Dec 11.

Center for Genomic Science, Fondazione Istituto Italiano di Tecnologia, Milan, Italy.

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December 2020

G-Quadruplexes in RNA Biology: Recent Advances and Future Directions.

Trends Biochem Sci 2020 Dec 7. Epub 2020 Dec 7.

Cancer Research Centre of Toulouse, INSERM UMR 1037, 31037 Toulouse, France; Université Toulouse III - Paul Sabatier, 31330 Toulouse, France. Electronic address:

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December 2020

Hyperconserved Elements in Human 5'UTRs Shape Essential Post-transcriptional Regulatory Networks.

Front Mol Biosci 2020 28;7:220. Epub 2020 Aug 28.

Department of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy.

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August 2020

Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling.

Genome Res 2020 Oct 25;30(10):1492-1507. Epub 2020 Sep 25.

Center for Genomic Science, Fondazione Istituto Italiano di Tecnologia, 20139 Milan, Italy.

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October 2020

Translation control can shape TP53-dependent cell fate.

Mol Cell Oncol 2020 23;7(5):1767483. Epub 2020 Jun 23.

Department of Cellular, Computational and Integrative Biology, CIBIO, University of Trento, Trento, Italy.

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June 2020

Nutlin-Induced Apoptosis Is Specified by a Translation Program Regulated by PCBP2 and DHX30.

Cell Rep 2020 03;30(13):4355-4369.e6

Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, via Sommarive 9, 38123 Trento, Italy. Electronic address:

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March 2020

The Architecture of the Human RNA-Binding Protein Regulatory Network.

iScience 2019 Nov 1;21:706-719. Epub 2019 Nov 1.

Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, TN 38123, Italy. Electronic address:

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November 2019

Exploring the Role of Fallopian Ciliated Cells in the Pathogenesis of High-Grade Serous Ovarian Cancer.

Int J Mol Sci 2018 Aug 24;19(9). Epub 2018 Aug 24.

Division of Molecular Oncology, Department of Translational Research, IRCCS CRO Aviano-National Cancer Institute, Via Franco Gallini, 2 33081 Aviano PN, Italy.

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August 2018

Handshakes and Fights: The Regulatory Interplay of RNA-Binding Proteins.

Authors:
Erik Dassi

Front Mol Biosci 2017 29;4:67. Epub 2017 Sep 29.

Centre for Integrative Biology, University of Trento, Trento, Italy.

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September 2017

DynaMIT: the dynamic motif integration toolkit.

Nucleic Acids Res 2016 06 18;44(10):4988. Epub 2016 Feb 18.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.

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June 2016

Preface.

Authors:
Erik Dassi

Methods Mol Biol 2016 ;1358:v-viii

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July 2016

Multi-omic profiling of MYCN-amplified neuroblastoma cell-lines.

Genom Data 2015 Dec 11;6:285-7. Epub 2015 Nov 11.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Italy.

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December 2015

Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression.

Methods Mol Biol 2016 ;1358:3-28

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Via Delle Regole n. 101, 38123, Mattarello, Trento, Italy.

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July 2016

Exome sequencing in a patient with Catel-Manzke-like syndrome excludes the involvement of the known genes and reveals a possible candidate.

Eur J Med Genet 2015 Nov 28;58(11):597-602. Epub 2015 Sep 28.

Medical Genetics, Department of Medical and Surgical Sciences, University Hospital of Modena, Italy. Electronic address:

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November 2015

Translational compensation of genomic instability in neuroblastoma.

Sci Rep 2015 Sep 24;5:14364. Epub 2015 Sep 24.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Italy.

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September 2015

DynaMIT: the dynamic motif integration toolkit.

Nucleic Acids Res 2016 Jan 7;44(1):e2. Epub 2015 Aug 7.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.

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January 2016

A New Splicing Isoform of Cacna2d4 Mimicking the Effects of c.2451insC Mutation in the Retina: Novel Molecular and Electrophysiological Insights.

Invest Ophthalmol Vis Sci 2015 Jul;56(8):4846-56

Centre for Integrative Biology (CIBIO), University of Trento, Trento, Italy 3Neuroscience Institute-National Research Council (CNR), Pisa, Italy.

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July 2015

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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July 2015

Fingerprints of a message: integrating positional information on the transcriptome.

Front Cell Dev Biol 2014 14;2:39. Epub 2014 Aug 14.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento Trento, Italy.

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November 2014

AURA 2: Empowering discovery of post-transcriptional networks.

Translation (Austin) 2014 29;2(1):e27738. Epub 2014 Jan 29.

Laboratory of Translational Genomics; Centre for Integrative Biology; University of Trento; Trento, Italy.

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January 2016

Transcriptome profiling in engrailed-2 mutant mice reveals common molecular pathways associated with autism spectrum disorders.

Mol Autism 2013 Dec 19;4(1):51. Epub 2013 Dec 19.

Laboratory of Molecular Neuropathology, Centre for Integrative Biology (CIBIO), University of Trento, Via delle Regole 101, 38123 Trento, Italy.

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December 2013

tRanslatome: an R/Bioconductor package to portray translational control.

Bioinformatics 2014 Jan 12;30(2):289-91. Epub 2013 Nov 12.

Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole 101, 38123 Mattarello (TN) and Institute of Biophysics CNR - Via alla Cascata 56/C, 38123 Povo (TN), Italy.

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January 2014

Hyper conserved elements in vertebrate mRNA 3'-UTRs reveal a translational network of RNA-binding proteins controlled by HuR.

Nucleic Acids Res 2013 Mar 1;41(5):3201-16. Epub 2013 Feb 1.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, via delle Regole, 101 38123 Mattarello (TN) Italy.

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March 2013

Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression.

RNA Biol 2012 Oct 20;9(10):1224-32. Epub 2012 Sep 20.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.

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October 2012