Erik Dassi

Cancer Research Centre of Toulouse, INSERM UMR 1037, 31037 Toulouse, France; Université Toulouse III - Paul Sabatier, 31330 Toulouse, France. Electronic address:

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December 2020

Hyperconserved Elements in Human 5'UTRs Shape Essential Post-transcriptional Regulatory Networks.

Authors:

Paola Zuccotti Daniele Peroni Valentina Potrich Alessandro Quattrone Erik Dassi

Front Mol Biosci 2020 28;7:220. Epub 2020 Aug 28.

Department of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy.

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August 2020

Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling.

Authors:

Mattia Furlan Eugenia Galeota Nunzio Del Gaudio Erik Dassi Michele Caselle Stefano de Pretis Mattia Pelizzola

Genome Res 2020 Oct 25;30(10):1492-1507. Epub 2020 Sep 25.

Center for Genomic Science, Fondazione Istituto Italiano di Tecnologia, 20139 Milan, Italy.

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October 2020

Translation control can shape TP53-dependent cell fate.

Authors:

Dario Rizzotto Sara Zaccara Annalisa Rossi Erik Dassi Alberto Inga

Mol Cell Oncol 2020 23;7(5):1767483. Epub 2020 Jun 23.

Department of Cellular, Computational and Integrative Biology, CIBIO, University of Trento, Trento, Italy.

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June 2020

hnRNP H/F drive RNA G-quadruplex-mediated translation linked to genomic instability and therapy resistance in glioblastoma.

Authors:

Pauline Herviou Morgane Le Bras Leïla Dumas Corinne Hieblot Julia Gilhodes Gianluca Cioci Jean-Philippe Hugnot Alfred Ameadan François Guillonneau Erik Dassi Anne Cammas Stefania Millevoi

Nat Commun 2020 05 27;11(1):2661. Epub 2020 May 27.

Cancer Research Center of Toulouse (CRCT), INSERM UMR 1037, 31037, Toulouse, France.

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May 2020

Nutlin-Induced Apoptosis Is Specified by a Translation Program Regulated by PCBP2 and DHX30.

Authors:

Dario Rizzotto Sara Zaccara Annalisa Rossi Matthew D Galbraith Zdenek Andrysik Ahwan Pandey Kelly D Sullivan Alessandro Quattrone Joaquín M Espinosa Erik Dassi Alberto Inga

Cell Rep 2020 03;30(13):4355-4369.e6

Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, via Sommarive 9, 38123 Trento, Italy. Electronic address:

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March 2020

The Architecture of the Human RNA-Binding Protein Regulatory Network.

Authors:

Alessandro Quattrone Erik Dassi

iScience 2019 Nov 1;21:706-719. Epub 2019 Nov 1.

Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, TN 38123, Italy. Electronic address:

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November 2019

Sleeping beauty genetic screen identifies miR-23b::BTBD7 gene interaction as crucial for colorectal cancer metastasis.

EBioMedicine 2019 Aug 11;46:79-93. Epub 2019 Jul 11.

Division of Molecular Oncology, Department of Translational Research, Centro di Riferimento Oncologico di Aviano (CRO) IRCCS, Italy.

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August 2019

Exploring the Role of Fallopian Ciliated Cells in the Pathogenesis of High-Grade Serous Ovarian Cancer.

Authors:

Michela Coan Gian Luca Rampioni Vinciguerra Laura Cesaratto Emanuela Gardenal Riccardo Bianchet Erik Dassi Andrea Vecchione Gustavo Baldassarre Riccardo Spizzo Milena Sabrina Nicoloso

Int J Mol Sci 2018 Aug 24;19(9). Epub 2018 Aug 24.

Division of Molecular Oncology, Department of Translational Research, IRCCS CRO Aviano-National Cancer Institute, Via Franco Gallini, 2 33081 Aviano PN, Italy.

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August 2018

The short-term impact of probiotic consumption on the oral cavity microbiome.

Authors:

Erik Dassi Pamela Ferretti Giuseppina Covello Roberto Bertorelli Michela A Denti Veronica De Sanctis Adrian Tett Nicola Segata

Sci Rep 2018 Jul 11;8(1):10476. Epub 2018 Jul 11.

Centre for Integrative Biology, University of Trento, Trento, Italy.

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July 2018

Handshakes and Fights: The Regulatory Interplay of RNA-Binding Proteins.

Authors:

Erik Dassi

Front Mol Biosci 2017 29;4:67. Epub 2017 Sep 29.

Centre for Integrative Biology, University of Trento, Trento, Italy.

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September 2017

Regulation of HuR structure and function by dihydrotanshinone-I.

Nucleic Acids Res 2017 Sep;45(16):9514-9527

Centre for Integrative Biology, CIBIO, University of Trento, Trento 38122, Italy.

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September 2017

DynaMIT: the dynamic motif integration toolkit.

Authors:

Erik Dassi Alessandro Quattrone

Nucleic Acids Res 2016 06 18;44(10):4988. Epub 2016 Feb 18.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.

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June 2016

Preface.

Authors:

Erik Dassi

Methods Mol Biol 2016 ;1358:v-viii

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July 2016

Multi-omic profiling of MYCN-amplified neuroblastoma cell-lines.

Authors:

Erik Dassi Valentina Greco Viktoryia Sidarovich Paola Zuccotti Natalia Arseni Paola Scaruffi Gian Paolo Tonini Alessandro Quattrone

Genom Data 2015 Dec 11;6:285-7. Epub 2015 Nov 11.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Italy.

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December 2015

Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression.

Authors:

Alessandro Quattrone Erik Dassi

Methods Mol Biol 2016 ;1358:3-28

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Via Delle Regole n. 101, 38123, Mattarello, Trento, Italy.

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July 2016

Exome sequencing in a patient with Catel-Manzke-like syndrome excludes the involvement of the known genes and reveals a possible candidate.

Authors:

Ilaria Stanghellini Erik Dassi Roberto Bertorelli Veronica De Sanctis Angela Caleffi Antonio Landi Antonio Percesepe

Eur J Med Genet 2015 Nov 28;58(11):597-602. Epub 2015 Sep 28.

Medical Genetics, Department of Medical and Surgical Sciences, University Hospital of Modena, Italy. Electronic address:

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November 2015

Translational compensation of genomic instability in neuroblastoma.

Authors:

Erik Dassi Valentina Greco Viktoryia Sidarovich Paola Zuccotti Natalia Arseni Paola Scaruffi Gian Paolo Tonini Alessandro Quattrone

Sci Rep 2015 Sep 24;5:14364. Epub 2015 Sep 24.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Italy.

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September 2015

DynaMIT: the dynamic motif integration toolkit.

Authors:

Erik Dassi Alessandro Quattrone

Nucleic Acids Res 2016 Jan 7;44(1):e2. Epub 2015 Aug 7.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.

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January 2016

A New Splicing Isoform of Cacna2d4 Mimicking the Effects of c.2451insC Mutation in the Retina: Novel Molecular and Electrophysiological Insights.

Authors:

Niccolò Bacchi Andrea Messina Verena Burtscher Erik Dassi Giovanni Provenzano Yuri Bozzi Gian Carlo Demontis Alexandra Koschak Michela A Denti Simona Casarosa

Invest Ophthalmol Vis Sci 2015 Jul;56(8):4846-56

Centre for Integrative Biology (CIBIO), University of Trento, Trento, Italy 3Neuroscience Institute-National Research Council (CNR), Pisa, Italy.

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July 2015

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:

Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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July 2015

Fingerprints of a message: integrating positional information on the transcriptome.

Authors:

Erik Dassi Alessandro Quattrone

Front Cell Dev Biol 2014 14;2:39. Epub 2014 Aug 14.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento Trento, Italy.

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November 2014

Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform.

Authors:

Erik Dassi Annalisa Ballarini Giuseppina Covello Alessandro Quattrone Olivier Jousson Veronica De Sanctis Roberto Bertorelli Michela Alessandra Denti Nicola Segata

J Biotechnol 2014 Nov 23;190:30-9. Epub 2014 Mar 23.

Centre for Integrative Biology, University of Trento, Italy. Electronic address:

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November 2014

AURA 2: Empowering discovery of post-transcriptional networks.

Authors:

Erik Dassi Angela Re Sara Leo Toma Tebaldi Luigi Pasini Daniele Peroni Alessandro Quattrone

Translation (Austin) 2014 29;2(1):e27738. Epub 2014 Jan 29.

Laboratory of Translational Genomics; Centre for Integrative Biology; University of Trento; Trento, Italy.

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January 2016

Transcriptome profiling in engrailed-2 mutant mice reveals common molecular pathways associated with autism spectrum disorders.

Authors:

Paola Sgadò Giovanni Provenzano Erik Dassi Valentina Adami Giulia Zunino Sacha Genovesi Simona Casarosa Yuri Bozzi

Mol Autism 2013 Dec 19;4(1):51. Epub 2013 Dec 19.

Laboratory of Molecular Neuropathology, Centre for Integrative Biology (CIBIO), University of Trento, Via delle Regole 101, 38123 Trento, Italy.

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December 2013

tRanslatome: an R/Bioconductor package to portray translational control.

Authors:

Toma Tebaldi Erik Dassi Galena Kostoska Gabriella Viero Alessandro Quattrone

Bioinformatics 2014 Jan 12;30(2):289-91. Epub 2013 Nov 12.

Laboratory of Translational Genomics - Centre for Integrative Biology, University of Trento, Via delle Regole 101, 38123 Mattarello (TN) and Institute of Biophysics CNR - Via alla Cascata 56/C, 38123 Povo (TN), Italy.

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January 2014

Hyper conserved elements in vertebrate mRNA 3'-UTRs reveal a translational network of RNA-binding proteins controlled by HuR.

Authors:

Erik Dassi Paola Zuccotti Sara Leo Alessandro Provenzani Michael Assfalg Mariapina D'Onofrio Paola Riva Alessandro Quattrone

Nucleic Acids Res 2013 Mar 1;41(5):3201-16. Epub 2013 Feb 1.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, via delle Regole, 101 38123 Mattarello (TN) Italy.

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March 2013

Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression.

Authors:

Erik Dassi Alessandro Quattrone

RNA Biol 2012 Oct 20;9(10):1224-32. Epub 2012 Sep 20.

Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.

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October 2012

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