Publications by authors named "Erich D Jarvis"

99Publications

Dense sampling of bird diversity increases power of comparative genomics.

Authors:
Shaohong Feng Josefin Stiller Yuan Deng Joel Armstrong Qi Fang Andrew Hart Reeve Duo Xie Guangji Chen Chunxue Guo Brant C Faircloth Bent Petersen Zongji Wang Qi Zhou Mark Diekhans Wanjun Chen Sergio Andreu-Sánchez Ashot Margaryan Jason Travis Howard Carole Parent George Pacheco Mikkel-Holger S Sinding Lara Puetz Emily Cavill Ângela M Ribeiro Leopold Eckhart Jon Fjeldså Peter A Hosner Robb T Brumfield Les Christidis Mads F Bertelsen Thomas Sicheritz-Ponten Dieter Thomas Tietze Bruce C Robertson Gang Song Gerald Borgia Santiago Claramunt Irby J Lovette Saul J Cowen Peter Njoroge John Philip Dumbacher Oliver A Ryder Jérôme Fuchs Michael Bunce David W Burt Joel Cracraft Guanliang Meng Shannon J Hackett Peter G Ryan Knud Andreas Jønsson Ian G Jamieson Rute R da Fonseca Edward L Braun Peter Houde Siavash Mirarab Alexander Suh Bengt Hansson Suvi Ponnikas Hanna Sigeman Martin Stervander Paul B Frandsen Henriette van der Zwan Rencia van der Sluis Carina Visser Christopher N Balakrishnan Andrew G Clark John W Fitzpatrick Reed Bowman Nancy Chen Alison Cloutier Timothy B Sackton Scott V Edwards Dustin J Foote Subir B Shakya Frederick H Sheldon Alain Vignal André E R Soares Beth Shapiro Jacob González-Solís Joan Ferrer-Obiol Julio Rozas Marta Riutort Anna Tigano Vicki Friesen Love Dalén Araxi O Urrutia Tamás Székely Yang Liu Michael G Campana André Corvelo Robert C Fleischer Kim M Rutherford Neil J Gemmell Nicolas Dussex Henrik Mouritsen Nadine Thiele Kira Delmore Miriam Liedvogel Andre Franke Marc P Hoeppner Oliver Krone Adam M Fudickar Borja Milá Ellen D Ketterson Andrew Eric Fidler Guillermo Friis Ángela M Parody-Merino Phil F Battley Murray P Cox Nicholas Costa Barroso Lima Francisco Prosdocimi Thomas Lee Parchman Barney A Schlinger Bette A Loiselle John G Blake Haw Chuan Lim Lainy B Day Matthew J Fuxjager Maude W Baldwin Michael J Braun Morgan Wirthlin Rebecca B Dikow T Brandt Ryder Glauco Camenisch Lukas F Keller Jeffrey M DaCosta Mark E Hauber Matthew I M Louder Christopher C Witt Jimmy A McGuire Joann Mudge Libby C Megna Matthew D Carling Biao Wang Scott A Taylor Glaucia Del-Rio Alexandre Aleixo Ana Tereza Ribeiro Vasconcelos Claudio V Mello Jason T Weir David Haussler Qiye Li Huanming Yang Jian Wang Fumin Lei Carsten Rahbek M Thomas P Gilbert Gary R Graves Erich D Jarvis Benedict Paten Guojie Zhang

Nature 2020 11 11;587(7833):252-257. Epub 2020 Nov 11.

China National GeneBank, BGI-Shenzhen, Shenzhen, China.

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http://dx.doi.org/10.1038/s41586-020-2873-9DOI Listing
November 2020

Evolution of vocal learning and spoken language.

Authors:
Erich D Jarvis

Science 2019 10 3;366(6461):50-54. Epub 2019 Oct 3.

Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA.

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http://dx.doi.org/10.1126/science.aax0287DOI Listing
October 2019

Identification and characterization of primordial germ cells in a vocal learning Neoaves species, the zebra finch.

FASEB J 2019 12 11;33(12):13825-13836. Epub 2019 Oct 11.

Department of Agricultural Biotechnology, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, South Korea.

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http://dx.doi.org/10.1096/fj.201900760RRDOI Listing
December 2019

A hypothesis on a role of oxytocin in the social mechanisms of speech and vocal learning.

Proc Biol Sci 2017 Aug;284(1861)

Department of Neurogenetics of Language, Rockefeller University, New York, NY, USA

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http://dx.doi.org/10.1098/rspb.2017.0988DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577482PMC
August 2017

Axon guidance pathways served as common targets for human speech/language evolution and related disorders.

Brain Lang 2017 11 8;174:1-8. Epub 2017 Jul 8.

MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S0093934X163018
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http://dx.doi.org/10.1016/j.bandl.2017.06.007DOI Listing
November 2017

Eliciting and Analyzing Male Mouse Ultrasonic Vocalization (USV) Songs.

J Vis Exp 2017 05 9(123). Epub 2017 May 9.

Department of Neurobiology, Duke University; Howard Hughes Medical Institute; The Rockefeller University;

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http://dx.doi.org/10.3791/54137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5607930PMC
May 2017

A Foxp2 Mutation Implicated in Human Speech Deficits Alters Sequencing of Ultrasonic Vocalizations in Adult Male Mice.

Front Behav Neurosci 2016 20;10:197. Epub 2016 Oct 20.

Department of Neurobiology, Duke University Medical CenterDurham, NC, USA; Howard Hughes Medical InstituteChevy Chase, MD, USA; The Rockefeller UniversityNew York, NY, USA.

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http://dx.doi.org/10.3389/fnbeh.2016.00197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5071336PMC
October 2016

Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles.

Genome Biol Evol 2016 08 25;8(8):2442-51. Epub 2016 Aug 25.

Department of Comparative Biomedical Sciences, Royal Veterinary College, Royal College Street, University of London, NW1 0TU, UK

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http://dx.doi.org/10.1093/gbe/evw166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010900PMC
August 2016

Bone-associated gene evolution and the origin of flight in birds.

BMC Genomics 2016 05 18;17:371. Epub 2016 May 18.

CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Rua dos Bragas, 177, 4050-123, Porto, Portugal.

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http://dx.doi.org/10.1186/s12864-016-2681-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4870793PMC
May 2016

Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds.

Genome Biol Evol 2016 Apr 13;8(4):1115-31. Epub 2016 Apr 13.

CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Portugal Department of Biology, Faculty of Sciences, University of Porto, Portugal

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http://dx.doi.org/10.1093/gbe/evw041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860681PMC
April 2016

Perspectives from the Avian Phylogenomics Project: Questions that Can Be Answered with Sequencing All Genomes of a Vertebrate Class.

Authors:
Erich D Jarvis

Annu Rev Anim Biosci 2016 ;4:45-59

Department of Neurobiology, Duke University Medical Center, Durham, North Carolina 27710.

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http://dx.doi.org/10.1146/annurev-animal-021815-111216DOI Listing
December 2016

Brain evolution by brain pathway duplication.

Philos Trans R Soc Lond B Biol Sci 2015 Dec;370(1684)

Department of Neurobiology, Duke University Medical Center, Durham, NC 27713, USA Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA

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http://dx.doi.org/10.1098/rstb.2015.0056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4650129PMC
December 2015

Surviving as an underrepresented minority scientist in a majority environment.

Authors:
Erich D Jarvis

Mol Biol Cell 2015 Nov;26(21):3692-6

Department of Neurobiology, Duke University Medical Center, Durham, NC 27710; Howard Hughes Medical Institute, Chevy Chase, MD 20815

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http://dx.doi.org/10.1091/mbc.E15-06-0451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626054PMC
November 2015

Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates.

Front Neurosci 2015 7;9:361. Epub 2015 Oct 7.

Genetics GIDP, University of Arizona Tucson, AZ, USA ; BIO5 Institute, University of Arizona Tucson, AZ, USA ; The School of Plant Sciences, University of Arizona Tucson, AZ, USA.

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http://journal.frontiersin.org/Article/10.3389/fnins.2015.00
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http://dx.doi.org/10.3389/fnins.2015.00361DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4595791PMC
October 2015

Listening in.

Authors:
Erich D Jarvis

Elife 2015 Oct 21;4:e11665. Epub 2015 Oct 21.

Department of Neurobiology and the Howard Hughes Medical Institute, Duke University Medical Center, Durham, United States.

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http://dx.doi.org/10.7554/eLife.11665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4612131PMC
October 2015

The Origin and Diversification of Birds.

Curr Biol 2015 Oct;25(19):R888-98

Department of Neurobiology, Duke University Medical Center, Durham, NC 27710, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2015.08.003DOI Listing
October 2015

Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds.

BMC Genomics 2015 Oct 6;16:751. Epub 2015 Oct 6.

CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Rua dos Bragas, 177, 4050-123, Porto, Portugal.

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http://dx.doi.org/10.1186/s12864-015-1924-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4595237PMC
October 2015

Transsynaptic Tracing from Peripheral Targets with Pseudorabies Virus Followed by Cholera Toxin and Biotinylated Dextran Amines Double Labeling.

J Vis Exp 2015 Sep 14(103). Epub 2015 Sep 14.

Department of Neurobiology, Duke University Medical Center; Howard Hughes Medical Institute;

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http://dx.doi.org/10.3791/50672DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4692604PMC
September 2015

Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds".

Science 2015 Sep;349(6255):1460

Department of Neurobiology, Duke University Medical Center, Durham, NC 27710, USA. Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.

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http://dx.doi.org/10.1126/science.aab1578DOI Listing
September 2015

Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida.

Mol Biol Evol 2015 Nov 28;32(11):2832-43. Epub 2015 Jul 28.

CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal

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http://dx.doi.org/10.1093/molbev/msv155DOI Listing
November 2015

A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis.

BMC Evol Biol 2015 Jun 30;15:124. Epub 2015 Jun 30.

Interdisciplinary Centre of Marine and Environmental Research-CIIMAR/CIMAR, University of Porto, Rua dos Bragas 289, 4050-123, Porto, Portugal.

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http://dx.doi.org/10.1186/s12862-015-0409-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4486697PMC
June 2015

Core and Shell Song Systems Unique to the Parrot Brain.

PLoS One 2015 24;10(6):e0118496. Epub 2015 Jun 24.

Department of Neurobiology, Duke University Medical Center, Durham, NC, United States of America; Howard Hughes Medical Institute, Chevy Chase, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0118496PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479475PMC
March 2016

Genomics: Bird sequencing project takes off.

Nature 2015 Jun;522(7554):34

China National GeneBank, BGI-Shenzhen, China.

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http://dx.doi.org/10.1038/522034dDOI Listing
June 2015

Male mice song syntax depends on social contexts and influences female preferences.

Front Behav Neurosci 2015 1;9:76. Epub 2015 Apr 1.

Department of Neurobiology, Duke University Medical Center Durham, NC, USA ; Howard Hughes Medical Institute Chevy Chase, MD, USA.

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http://dx.doi.org/10.3389/fnbeh.2015.00076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383150PMC
April 2015

Comparative genomic data of the Avian Phylogenomics Project.

Gigascience 2014 11;3(1):26. Epub 2014 Dec 11.

China National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China ; Department of Biology, University of Copenhagen, DK-1165 Copenhagen, Denmark ; Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, 21589 Saudi Arabia ; Macau University of Science and Technology, Avenida Wai long, Taipa, Macau, 999078 China ; Department of Medicine, University of Hong Kong, Hong Kong, China.

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http://dx.doi.org/10.1186/2047-217X-3-26DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322804PMC
February 2015

Maintenance and neuronal differentiation of chicken induced pluripotent stem-like cells.

Stem Cells Int 2014 9;2014:182737. Epub 2014 Dec 9.

Department of Neurobiology, Duke University Medical Center and Howard Hughes Medical Institute, P.O. Box 3209, Durham, NC 27710, USA.

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http://dx.doi.org/10.1155/2014/182737DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4276120PMC
January 2015

Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates.

PLoS One 2014 30;9(12):e74132. Epub 2014 Dec 30.

CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074132PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280113PMC
September 2015

The basal ganglia within a cognitive system in birds and mammals.

Behav Brain Sci 2014 Dec;37(6):568-9; discussion 577-604

Howard Hughes Medical Institute and Department of Neurobiology, Duke University, Durham, NC 27710. http://www.jarvislab.net/

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http://dx.doi.org/10.1017/S0140525X13004160DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4495319PMC
December 2014

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Science 2014 Dec 11;346(6215):1254449. Epub 2014 Dec 11.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA. Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA. Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA.

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http://jarvislab.net/wp-content/uploads/2012/02/Green-et-al-
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http://www.sciencemag.org/cgi/doi/10.1126/science.1254449
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http://dx.doi.org/10.1126/science.1254449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4386873PMC
December 2014

Evidence for a single loss of mineralized teeth in the common avian ancestor.

Science 2014 Dec 11;346(6215):1254390. Epub 2014 Dec 11.

Department of Biology, University of California, Riverside, CA 92521, USA.

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http://jarvislab.net/wp-content/uploads/2012/02/Meredith-et-
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http://www.sciencemag.org/cgi/doi/10.1126/science.1254390
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http://dx.doi.org/10.1126/science.1254390DOI Listing
December 2014

Complex evolutionary trajectories of sex chromosomes across bird taxa.

Science 2014 Dec 11;346(6215):1246338. Epub 2014 Dec 11.

China National Genebank, BGI-Shenzhen, Shenzhen, 518083. China. Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1246338DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6445272PMC
December 2014

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Authors:
Erich D Jarvis Siavash Mirarab Andre J Aberer Bo Li Peter Houde Cai Li Simon Y W Ho Brant C Faircloth Benoit Nabholz Jason T Howard Alexander Suh Claudia C Weber Rute R da Fonseca Jianwen Li Fang Zhang Hui Li Long Zhou Nitish Narula Liang Liu Ganesh Ganapathy Bastien Boussau Md Shamsuzzoha Bayzid Volodymyr Zavidovych Sankar Subramanian Toni Gabaldón Salvador Capella-Gutiérrez Jaime Huerta-Cepas Bhanu Rekepalli Kasper Munch Mikkel Schierup Bent Lindow Wesley C Warren David Ray Richard E Green Michael W Bruford Xiangjiang Zhan Andrew Dixon Shengbin Li Ning Li Yinhua Huang Elizabeth P Derryberry Mads Frost Bertelsen Frederick H Sheldon Robb T Brumfield Claudio V Mello Peter V Lovell Morgan Wirthlin Maria Paula Cruz Schneider Francisco Prosdocimi José Alfredo Samaniego Amhed Missael Vargas Velazquez Alonzo Alfaro-Núñez Paula F Campos Bent Petersen Thomas Sicheritz-Ponten An Pas Tom Bailey Paul Scofield Michael Bunce David M Lambert Qi Zhou Polina Perelman Amy C Driskell Beth Shapiro Zijun Xiong Yongli Zeng Shiping Liu Zhenyu Li Binghang Liu Kui Wu Jin Xiao Xiong Yinqi Qiuemei Zheng Yong Zhang Huanming Yang Jian Wang Linnea Smeds Frank E Rheindt Michael Braun Jon Fjeldsa Ludovic Orlando F Keith Barker Knud Andreas Jønsson Warren Johnson Klaus-Peter Koepfli Stephen O'Brien David Haussler Oliver A Ryder Carsten Rahbek Eske Willerslev Gary R Graves Travis C Glenn John McCormack Dave Burt Hans Ellegren Per Alström Scott V Edwards Alexandros Stamatakis David P Mindell Joel Cracraft Edward L Braun Tandy Warnow Wang Jun M Thomas P Gilbert Guojie Zhang

Science 2014 Dec;346(6215):1320-31

China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China. Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1253451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405904PMC
December 2014

Comparative genomics reveals insights into avian genome evolution and adaptation.

Science 2014 Dec 11;346(6215):1311-20. Epub 2014 Dec 11.

China National GeneBank, Beijing Genomics Institute (BGI)-Shenzhen, Shenzhen, 518083, China. Macau University of Science and Technology, Avenida Wai long, Taipa, Macau 999078, China. Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia. Department of Medicine, University of Hong Kong, Hong Kong.

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http://jarvislab.net/wp-content/uploads/2014/12/Science-2014
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http://www.sciencemag.org/cgi/doi/10.1126/science.1251385
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http://dx.doi.org/10.1126/science.1251385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390078PMC
December 2014

Genomic resources for the endangered Hawaiian honeycreepers.

BMC Genomics 2014 Dec 12;15:1098. Epub 2014 Dec 12.

Center for Conservation and Evolutionary Genetics, Smithsonian Conservation Biology Institute, Washington DC 20008, USA.

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http://dx.doi.org/10.1186/1471-2164-15-1098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4300047PMC
December 2014

Comparative genomics reveals molecular features unique to the songbird lineage.

BMC Genomics 2014 Dec 13;15:1082. Epub 2014 Dec 13.

Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR 97214, USA.

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http://dx.doi.org/10.1186/1471-2164-15-1082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4377847PMC
December 2014

Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners.

J Comp Neurol 2015 Apr 30;523(6):892-906. Epub 2014 Dec 30.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina, 27710; Computational Biology and Bioinformatics Program, Institute for Genome Science and Policy, Duke University, Durham, North Carolina, 27710; Beijing Prosperous Biopharm, Beijing, 100085, China.

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http://dx.doi.org/10.1002/cne.23719DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4329046PMC
April 2015

Basal ganglia function, stuttering, sequencing, and repair in adult songbirds.

Sci Rep 2014 Oct 13;4:6590. Epub 2014 Oct 13.

Howard Hughes Medical Institute and Department of Neurobiology, Duke University Medical Center, Durham, NC, USA.

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http://dx.doi.org/10.1038/srep06590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4194444PMC
October 2014

Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species.

Elife 2013 Sep 3;2:e00036. Epub 2013 Sep 3.

Department of Biochemistry , University of Puerto Rico Medical Sciences Campus , San Juan , Puerto Rico ; Department of Neurobiology , Duke University Medical Center , Durham , United States ; Howard Hughes Medical Institute, Duke University Medical Center , Durham , United States.

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http://dx.doi.org/10.7554/eLife.00036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3762186PMC
September 2013

Different mechanisms are responsible for dishabituation of electrophysiological auditory responses to a change in acoustic identity than to a change in stimulus location.

Neurobiol Learn Mem 2013 Nov 30;106:163-76. Epub 2013 Aug 30.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC, USA; Institute of Neuroscience, Newcastle University, Newcastle upon Tyne, UK. Electronic address:

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http://dx.doi.org/10.1016/j.nlm.2013.08.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3986339PMC
November 2013

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

Rudimentary substrates for vocal learning in a suboscine.

Nat Commun 2013 ;4:2082

Laboratory of Animal Behavior, The Rockefeller University, New York, New York, 10065, USA.

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http://jarvislab.net/wp-content/uploads/2013/07/Liu-et-al-20
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http://www.nature.com/doifinder/10.1038/ncomms3082
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http://dx.doi.org/10.1038/ncomms3082DOI Listing
January 2014

Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities.

J Comp Neurol 2013 Nov;521(16):3666-701

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina, 27710.

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http://dx.doi.org/10.1002/cne.23406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3863995PMC
November 2013

Mouse vocal communication system: are ultrasounds learned or innate?

Brain Lang 2013 Jan 4;124(1):96-116. Epub 2013 Jan 4.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC 27710, USA.

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http://dx.doi.org/10.1016/j.bandl.2012.10.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3886250PMC
January 2013

Of mice, birds, and men: the mouse ultrasonic song system has some features similar to humans and song-learning birds.

PLoS One 2012 10;7(10):e46610. Epub 2012 Oct 10.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0046610PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3468587PMC
April 2013

Birds, primates, and spoken language origins: behavioral phenotypes and neurobiological substrates.

Front Evol Neurosci 2012 16;4:12. Epub 2012 Aug 16.

Institute of Neuroscience, Newcastle University Newcastle upon Tyne, UK.

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http://dx.doi.org/10.3389/fnevo.2012.00012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3419981PMC
October 2012

Specialized motor-driven dusp1 expression in the song systems of multiple lineages of vocal learning birds.

PLoS One 2012 2;7(8):e42173. Epub 2012 Aug 2.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042173PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3410896PMC
January 2013

Interspecies avian brain chimeras reveal that large brain size differences are influenced by cell-interdependent processes.

PLoS One 2012 30;7(7):e42477. Epub 2012 Jul 30.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University, Durham, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042477PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3408455PMC
January 2013

Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue.

J Vis Exp 2012 Apr 27(62). Epub 2012 Apr 27.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3466668PMC
April 2012

Dopamine regulation of human speech and bird song: a critical review.

Brain Lang 2012 Sep 28;122(3):142-50. Epub 2012 Jan 28.

Department of Neurology, Mount Sinai School of Medicine, New York, NY, United States.

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http://dx.doi.org/10.1016/j.bandl.2011.12.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362661PMC
September 2012

Convergent differential regulation of parvalbumin in the brains of vocal learners.

PLoS One 2012 6;7(1):e29457. Epub 2012 Jan 6.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina, United States of America.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3253077PMC
May 2012

Dynamic evolution of base composition: causes and consequences in avian phylogenomics.

Mol Biol Evol 2011 Aug 4;28(8):2197-210. Epub 2011 Apr 4.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1093/molbev/msr047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3144382PMC
August 2011

Microproteomics: quantitative proteomic profiling of small numbers of laser-captured cells.

Cold Spring Harb Protoc 2011 Feb 1;2011(2):pdb.prot5573. Epub 2011 Feb 1.

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina 27710, USA.

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http://dx.doi.org/10.1101/pdb.prot5573DOI Listing
February 2011

Night-time neuronal activation of Cluster N in a day- and night-migrating songbird.

Eur J Neurosci 2010 Aug 6;32(4):619-24. Epub 2010 Jul 6.

AG Neurosensorik, Institut für Biologie und Umweltwissenschaften, University of Oldenburg, D-26111 Oldenburg, Germany.

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http://dx.doi.org/10.1111/j.1460-9568.2010.07311.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2924469PMC
August 2010

Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny.

Mol Phylogenet Evol 2010 Oct 25;57(1):466-70. Epub 2010 Jun 25.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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October 2010

The dusp1 immediate early gene is regulated by natural stimuli predominantly in sensory input neurons.

J Comp Neurol 2010 Jul;518(14):2873-901

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina 27710, USA.

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http://dx.doi.org/10.1002/cne.22370DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2904818PMC
July 2010

The genome of a songbird.

Nature 2010 Apr;464(7289):757-62

The Genome Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature08819DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187626PMC
April 2010

Dopamine receptors in a songbird brain.

J Comp Neurol 2010 Mar;518(6):741-69

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, North Carolina 27710, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2904815PMC
March 2010

Early onset of deafening-induced song deterioration and differential requirements of the pallial-basal ganglia vocal pathway.

Eur J Neurosci 2008 Dec;28(12):2519-32

Department of Neurobiology, Box 3209, Duke University Medical Center, Durham, NC 27710, USA.

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December 2008

Assessing visual requirements for social context-dependent activation of the songbird song system.

Proc Biol Sci 2009 Jan;276(1655):279-89

Department of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC 27710, USA.

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http://dx.doi.org/10.1098/rspb.2008.1138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2674358PMC
January 2009

Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics.

Eur J Neurosci 2008 Mar;27(6):1409-22

Department of Brain and Cognitive Sciences, University of Rochester, Rochester, NY 14627, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2517219PMC
March 2008

Molecular mapping of movement-associated areas in the avian brain: a motor theory for vocal learning origin.

PLoS One 2008 Mar 12;3(3):e1768. Epub 2008 Mar 12.

Volkswagen Nachwuchsgruppe Animal Navigation, Institut für Biologie und Umweltwissenschaften (IBU), University of Oldenburg, Oldenburg, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2258151PMC
March 2008

Neural systems for vocal learning in birds and humans: a synopsis.

Authors:
Erich D Jarvis

J Ornithol 2007 Dec;148(1):35-44

Duke University Medical Center, Durham, NC 27710, USA e-mail:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2726745PMC
December 2007

Role of the midbrain dopaminergic system in modulation of vocal brain activation by social context.

Eur J Neurosci 2007 Jun;25(11):3406-16

Laboratory for Vocal Behaviour Mechanisms, RIKEN Brain Science Institute, Wako-shi, Japan.

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http://dx.doi.org/10.1111/j.1460-9568.2007.05600.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561249PMC
June 2007

The pallial basal ganglia pathway modulates the behaviorally driven gene expression of the motor pathway.

Eur J Neurosci 2007 Apr;25(7):2145-60

Department of Neurobiology, Box 3209, Duke University Medical Center, Durham, North Carolina 27710, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561259PMC
April 2007

Lateralized activation of Cluster N in the brains of migratory songbirds.

Eur J Neurosci 2007 Feb;25(4):1166-73

AG Animal Navigation, IBU, University of Oldenburg, D-26111 Oldenburg, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2475547PMC
February 2007

Computational inference of neural information flow networks.

PLoS Comput Biol 2006 Nov 12;2(11):e161. Epub 2006 Oct 12.

Department of Neurobiology, Duke University Medical Center, Durham, North Carolina, United States of America.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1664702PMC
November 2006

Social context-dependent singing-regulated dopamine.

J Neurosci 2006 Aug;26(35):9010-4

Department of Neurobiology, Duke University Medical Center, Durham, North Carolina 27710, USA.

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http://dx.doi.org/10.1523/JNEUROSCI.1335-06.2006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2474783PMC
August 2006

Rapid behavioral and genomic responses to social opportunity.

PLoS Biol 2005 Nov 18;3(11):e363. Epub 2005 Oct 18.

Biological Sciences, Stanford University, Stanford, California, United States of America.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1255743PMC
November 2005

Night-vision brain area in migratory songbirds.

Proc Natl Acad Sci U S A 2005 Jun 31;102(23):8339-44. Epub 2005 May 31.

Volkswagen Nachwuchsgruppe Animal Navigation, Institut für Biologie und Umweltwissenschaften, University of Oldenburg, D-26111 Oldenburg, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1149410PMC
June 2005