Publications by authors named "Erich Bornberg-Bauer"

100Publications

Climate change facilitates a parasite's host exploitation via temperature-mediated immunometabolic processes.

Glob Chang Biol 2020 Oct 17. Epub 2020 Oct 17.

Institute for Evolution and Biodiversity, Animal Evolutionary Ecology, University of Münster, Hüfferstr. 1, 48149, Münster, Germany.

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http://dx.doi.org/10.1111/gcb.15402DOI Listing
October 2020

Evolution of novel genes in three-spined stickleback populations.

Heredity (Edinb) 2020 Aug 4;125(1-2):50-59. Epub 2020 Jun 4.

Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1038/s41437-020-0319-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7413265PMC
August 2020

Comparative analyses of caste, sex, and developmental stage-specific transcriptomes in two ants.

Ecol Evol 2020 May 30;10(10):4193-4203. Epub 2020 Mar 30.

Institute of Molecular and Organismic Evolution Johannes Gutenberg University Mainz Germany.

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http://dx.doi.org/10.1002/ece3.6187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7246193PMC
May 2020

Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.

Genome Biol Evol 2020 Jul;12(7):1099-1188

Department of Evolutionary Biology and Ecology, Institute of Biology I (Zoology), Albert Ludwig University Freiburg, Germany.

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http://dx.doi.org/10.1093/gbe/evaa106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7455281PMC
July 2020

A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila.

J Mol Evol 2020 May 7;88(4):382-398. Epub 2020 Apr 7.

Institute for Evolution and Biodiversity, 48149, Münster, Germany.

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http://dx.doi.org/10.1007/s00239-020-09939-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7162840PMC
May 2020

The modular nature of protein evolution: domain rearrangement rates across eukaryotic life.

BMC Evol Biol 2020 02 14;20(1):30. Epub 2020 Feb 14.

Institute for Evolution and Biodiversity, University of Münster, Hüfferstrasse 1, Münster, 48149, Germany.

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http://dx.doi.org/10.1186/s12862-020-1591-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7023805PMC
February 2020

Gene content evolution in the arthropods.

Genome Biol 2020 01 23;21(1):15. Epub 2020 Jan 23.

Human Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-019-1925-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6977273PMC
January 2020

High-Throughput, Lysis-Free Screening for Sulfatase Activity Using Autodisplay in Microdroplets.

ACS Synth Biol 2019 12 4;8(12):2690-2700. Epub 2019 Dec 4.

Institute for Evolution and Biodiversity , University of Münster , 48149 Münster , Germany.

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http://dx.doi.org/10.1021/acssynbio.9b00274DOI Listing
December 2019

Robustness by intrinsically disordered C-termini and translational readthrough.

Nucleic Acids Res 2019 Dec;47(22):11978-11980

Institute of Biodiversity and Evolution, University of Münster, Hüfferstr. 1, 48151 Münster, Germany.

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http://dx.doi.org/10.1093/nar/gkz1106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145639PMC
December 2019

Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme.

Nat Chem Biol 2019 11 21;15(11):1120-1128. Epub 2019 Oct 21.

Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1038/s41589-019-0386-3DOI Listing
November 2019

DOGMA: a web server for proteome and transcriptome quality assessment.

Nucleic Acids Res 2019 07;47(W1):W507-W510

Institute for Evolution and Biodiversity, Westfälische Wilhelms-Universität Münster, Hüfferstrasse 1, NRW, 48149 Münster, Germany.

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http://dx.doi.org/10.1093/nar/gkz366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602495PMC
July 2019

Becoming a de novo gene.

Nat Ecol Evol 2019 04;3(4):524-525

Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1038/s41559-019-0845-yDOI Listing
April 2019

Evolutionary Potential of Cis-Regulatory Mutations to Cause Rapid Changes in Transcription Factor Binding.

Genome Biol Evol 2019 02 1;11(2):406-414. Epub 2019 Feb 1.

Molecular Evolution and Bioinformatics, University of Muenster, Germany.

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http://dx.doi.org/10.1093/gbe/evy269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6370388PMC
February 2019

A Roadmap to Domain Based Proteomics.

Methods Mol Biol 2019 ;1851:287-300

Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1007/978-1-4939-8736-8_16DOI Listing
May 2019

Robustness by intrinsically disordered C-termini and translational readthrough.

Nucleic Acids Res 2018 11;46(19):10184-10194

Institute of Biodiversity and Evolution, University of Münster, Hüfferstr. 1, 48151 Münster, Germany.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky778DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6365619PMC
November 2018

Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover.

Nat Ecol Evol 2018 10 10;2(10):1626-1632. Epub 2018 Sep 10.

Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1038/s41559-018-0639-7DOI Listing
October 2018

The first cockroach genome and its significance for understanding development and the evolution of insect eusociality.

J Exp Zool B Mol Dev Evol 2018 07;330(5):251-253

Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1002/jez.b.22826DOI Listing
July 2018

Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest.

J Exp Zool B Mol Dev Evol 2018 07 11;330(5):254-264. Epub 2018 Jul 11.

Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina.

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http://dx.doi.org/10.1002/jez.b.22824DOI Listing
July 2018

Reconstructed evolution of insulin receptors in insects reveals duplications in early insects and cockroaches.

J Exp Zool B Mol Dev Evol 2018 07 10;330(5):305-311. Epub 2018 Jun 10.

Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1002/jez.b.22809DOI Listing
July 2018

Remodeling of the juvenile hormone pathway through caste-biased gene expression and positive selection along a gradient of termite eusociality.

J Exp Zool B Mol Dev Evol 2018 07 29;330(5):296-304. Epub 2018 May 29.

Evolutionary Biology & Ecology, University of Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1002/jez.b.22805DOI Listing
July 2018

Origins and structural properties of novel and de novo protein domains during insect evolution.

FEBS J 2018 07 29;285(14):2605-2625. Epub 2018 Jun 29.

Institute for Evolution and Biodiversity, Westfalian Wilhelms University Muenster, Germany.

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http://dx.doi.org/10.1111/febs.14504DOI Listing
July 2018

Structural and Mechanistic Analysis of the Choline Sulfatase from Sinorhizobium melliloti: A Class I Sulfatase Specific for an Alkyl Sulfate Ester.

J Mol Biol 2018 03 17;430(7):1004-1023. Epub 2018 Feb 17.

Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2018.02.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870055PMC
March 2018

Tribolium castaneum gene expression changes after Paranosema whitei infection.

J Invertebr Pathol 2018 03 13;153:92-98. Epub 2018 Feb 13.

Justus-Liebig-Universität Giessen, Germany.

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http://dx.doi.org/10.1016/j.jip.2018.02.009DOI Listing
March 2018

Comparative analysis of lincRNA in insect species.

BMC Evol Biol 2017 07 3;17(1):155. Epub 2017 Jul 3.

Institute of Evolution and Biodiversity, University of Münster, Hüfferstrasse,1, Münster, Münster, Germany.

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http://dx.doi.org/10.1186/s12862-017-0985-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5494802PMC
July 2017

Enzyme sub-functionalization driven by regulation.

EMBO Rep 2017 07 14;18(7):1043-1045. Epub 2017 Jun 14.

Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

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http://dx.doi.org/10.15252/embr.201744383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5494500PMC
July 2017

Fact or fiction: updates on how protein-coding genes might emerge from previously non-coding DNA.

F1000Res 2017 19;6:57. Epub 2017 Jan 19.

Institute for Evolution and Biodiversity, University of Muenster, Muenster, Germany.

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http://dx.doi.org/10.12688/f1000research.10079.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5247788PMC
January 2017

Chapter 6. Comparative genomic approaches to investigate molecular traits specific to social insects.

Curr Opin Insect Sci 2016 08 27;16:87-94. Epub 2016 May 27.

Institute for Evolution and Biodiversity, Westfalian Wilhelms University, Hüfferstrasse 1, D-48149 Münster, Germany.

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http://dx.doi.org/10.1016/j.cois.2016.05.016DOI Listing
August 2016

Evolution of Protein Domain Repeats in Metazoa.

Mol Biol Evol 2016 12 26;33(12):3170-3182. Epub 2016 Sep 26.

Institute for Evolution and Biodiversity, Westfalian Wilhelms University, Huefferstrasse 1, Muenster, Germany

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http://dx.doi.org/10.1093/molbev/msw194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100051PMC
December 2016

Comparative transcriptomics of stickleback immune gene responses upon infection by two helminth parasites, Diplostomum pseudospathaceum and Schistocephalus solidus.

Zoology (Jena) 2016 08 23;119(4):307-13. Epub 2016 May 23.

GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Evolutionsökologie Mariner Fische, Düsternbrooker Weg 20, D-24105 Kiel, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.zool.2016.05.005DOI Listing
August 2016

Mechanisms of transcription factor evolution in Metazoa.

Nucleic Acids Res 2016 07 10;44(13):6287-97. Epub 2016 Jun 10.

Evolutionary Bioinformatics Group, Institute for Evolution and Biodiversity, Hüfferstrasse 1, D-48149 Münster, Germany

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http://dx.doi.org/10.1093/nar/gkw492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291267PMC
July 2016

DOGMA: domain-based transcriptome and proteome quality assessment.

Bioinformatics 2016 09 5;32(17):2577-81. Epub 2016 May 5.

Institute for Evolution and Biodiversity, University of Münster, Münster 48149, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btw231DOI Listing
September 2016

Emergence of de novo proteins from 'dark genomic matter' by 'grow slow and moult'.

Biochem Soc Trans 2015 Oct;43(5):867-73

Institute for Evolution and Biodiversity, University of Muenster, Huefferstrasse 1, D48149 Muenster, Germany.

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http://dx.doi.org/10.1042/BST20150089DOI Listing
October 2015

Immunity comes first: the effect of parasite genotypes on adaptive immunity and immunization in three-spined sticklebacks.

Dev Comp Immunol 2016 Jan 21;54(1):137-44. Epub 2015 Sep 21.

Evolutionary Ecology of Marine Fishes, GEOMAR Helmholtz-Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany.

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http://dx.doi.org/10.1016/j.dci.2015.09.008DOI Listing
January 2016

The Rise and Fall of TRP-N, an Ancient Family of Mechanogated Ion Channels, in Metazoa.

Genome Biol Evol 2015 Jun 22;7(6):1713-27. Epub 2015 Jun 22.

Institute for Evolution and Biodiversity, University of Muenster, Germany

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http://dx.doi.org/10.1093/gbe/evv091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4494053PMC
June 2015

Host-Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes.

PLoS Biol 2015 Jun 4;13(6):e1002169. Epub 2015 Jun 4.

Department of Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-University of Kiel, Kiel, Germany; Department of Animal Evolutionary Ecology, Institute of Evolution and Ecology, University of Tuebingen, Tuebingen, Germany.

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https://dx.plos.org/10.1371/journal.pbio.1002169
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http://dx.doi.org/10.1371/journal.pbio.1002169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4456383PMC
June 2015

Domain similarity based orthology detection.

BMC Bioinformatics 2015 May 13;16:154. Epub 2015 May 13.

Institute for Evolution and Biodiversity, University of Münster, Hüfferstr. 1, Münster, Germany.

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http://dx.doi.org/10.1186/s12859-015-0570-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4443542PMC
May 2015

The genomes of two key bumblebee species with primitive eusocial organization.

Authors:
Ben M Sadd Seth M Barribeau Guy Bloch Dirk C de Graaf Peter Dearden Christine G Elsik Jürgen Gadau Cornelis J P Grimmelikhuijzen Martin Hasselmann Jeffrey D Lozier Hugh M Robertson Guy Smagghe Eckart Stolle Matthias Van Vaerenbergh Robert M Waterhouse Erich Bornberg-Bauer Steffen Klasberg Anna K Bennett Francisco Câmara Roderic Guigó Katharina Hoff Marco Mariotti Monica Munoz-Torres Terence Murphy Didac Santesmasses Gro V Amdam Matthew Beckers Martin Beye Matthias Biewer Márcia M G Bitondi Mark L Blaxter Andrew F G Bourke Mark J F Brown Severine D Buechel Rossanah Cameron Kaat Cappelle James C Carolan Olivier Christiaens Kate L Ciborowski David F Clarke Thomas J Colgan David H Collins Andrew G Cridge Tamas Dalmay Stephanie Dreier Louis du Plessis Elizabeth Duncan Silvio Erler Jay Evans Tiago Falcon Kevin Flores Flávia C P Freitas Taro Fuchikawa Tanja Gempe Klaus Hartfelder Frank Hauser Sophie Helbing Fernanda C Humann Frano Irvine Lars S Jermiin Claire E Johnson Reed M Johnson Andrew K Jones Tatsuhiko Kadowaki Jonathan H Kidner Vasco Koch Arian Köhler F Bernhard Kraus H Michael G Lattorff Megan Leask Gabrielle A Lockett Eamonn B Mallon David S Marco Antonio Monika Marxer Ivan Meeus Robin F A Moritz Ajay Nair Kathrin Näpflin Inga Nissen Jinzhi Niu Francis M F Nunes John G Oakeshott Amy Osborne Marianne Otte Daniel G Pinheiro Nina Rossié Olav Rueppell Carolina G Santos Regula Schmid-Hempel Björn D Schmitt Christina Schulte Zilá L P Simões Michelle P M Soares Luc Swevers Eva C Winnebeck Florian Wolschin Na Yu Evgeny M Zdobnov Peshtewani K Aqrawi Kerstin P Blankenburg Marcus Coyle Liezl Francisco Alvaro G Hernandez Michael Holder Matthew E Hudson LaRonda Jackson Joy Jayaseelan Vandita Joshi Christie Kovar Sandra L Lee Robert Mata Tittu Mathew Irene F Newsham Robin Ngo Geoffrey Okwuonu Christopher Pham Ling-Ling Pu Nehad Saada Jireh Santibanez DeNard Simmons Rebecca Thornton Aarti Venkat Kimberly K O Walden Yuan-Qing Wu Griet Debyser Bart Devreese Claire Asher Julie Blommaert Ariel D Chipman Lars Chittka Bertrand Fouks Jisheng Liu Meaghan P O'Neill Seirian Sumner Daniela Puiu Jiaxin Qu Steven L Salzberg Steven E Scherer Donna M Muzny Stephen Richards Gene E Robinson Richard A Gibbs Paul Schmid-Hempel Kim C Worley

Genome Biol 2015 Apr 24;16:76. Epub 2015 Apr 24.

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-015-0623-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4414376PMC
April 2015

Detection of orphan domains in Drosophila using "hydrophobic cluster analysis".

Biochimie 2015 Dec 28;119:244-53. Epub 2015 Feb 28.

IMPMC, Sorbonne Universités - UMR CNRS 7590, UPMC Univ Paris 06, Muséum National d'Histoire Naturelle, IRD UMR 206, IUC 4 Place Jussieu, F-75005 Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2015.02.019DOI Listing
December 2015

MDAT- Aligning multiple domain arrangements.

BMC Bioinformatics 2015 Jan 28;16:19. Epub 2015 Jan 28.

Institute for Evolution and Biodiversity, University of Münster, Hüfferstr. 1, Münster, Germany.

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http://dx.doi.org/10.1186/s12859-014-0442-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384290PMC
January 2015

Protein domain evolution is associated with reproductive diversification and adaptive radiation in the genus Eucalyptus.

New Phytol 2015 Jun 11;206(4):1328-36. Epub 2014 Dec 11.

Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), Genomics Research Institute, University of Pretoria, Private Bag X20, Pretoria, 0028, South Africa.

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http://dx.doi.org/10.1111/nph.13211DOI Listing
June 2015

The genome of Eucalyptus grandis.

Nature 2014 Jun 11;510(7505):356-62. Epub 2014 Jun 11.

1] US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA [2] HudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, Alabama 35801, USA.

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http://dx.doi.org/10.1038/nature13308DOI Listing
June 2014

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins.

Bioinformatics 2014 Jan 12;30(2):282-3. Epub 2013 Nov 12.

Institute for Evolution and Biodiversity, Hüfferstrasse 1, Westphalian Wilhelms-University Münster, 48147 Münster, Germany, and Max Planck Institute for Infection Biology, Chariteplatz 1, 10117 Berlin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btt640DOI Listing
January 2014

Genomic divergence between nine- and three-spined sticklebacks.

BMC Genomics 2013 Nov 5;14:756. Epub 2013 Nov 5.

Ecological Genetics Research Unit, Department of Biosciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1186/1471-2164-14-756DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4046692PMC
November 2013

Rapid similarity search of proteins using alignments of domain arrangements.

Bioinformatics 2014 Jan 4;30(2):274-81. Epub 2013 Jul 4.

Westfalian Wilhelms University, Institute of Evolution and Biodiversity, Huefferstr. 1, 48149 Muenster, Germany and Max Planck Institute for Infection Biology, Charitéplatz 1, 10117 Berlin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btt379DOI Listing
January 2014

Dynamics and adaptive benefits of modular protein evolution.

Curr Opin Struct Biol 2013 Jun 3;23(3):459-66. Epub 2013 Apr 3.

Institute for Evolution and Biodiversity, School of Biological Sciences, University of Münster, Hüfferstrasse 1, D48149 Münster, Germany.

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http://dx.doi.org/10.1016/j.sbi.2013.02.012DOI Listing
June 2013

Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree.

Biochim Biophys Acta 2013 May 1;1834(5):898-907. Epub 2013 Feb 1.

Institute for Evolution and Biodiversity, Münster, Germany.

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http://dx.doi.org/10.1016/j.bbapap.2013.01.007DOI Listing
May 2013

Mechanisms and dynamics of orphan gene emergence in insect genomes.

Genome Biol Evol 2013 ;5(2):439-55

Institute for Evolution and Biodiversity, University of Muenster, Muenster, Germany.

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http://dx.doi.org/10.1093/gbe/evt009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3590893PMC
September 2013

Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts.

PLoS Comput Biol 2012 13;8(9):e1002659. Epub 2012 Sep 13.

Evolutionary Bioinformatics Group, Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.

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http://dx.doi.org/10.1371/journal.pcbi.1002659DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3441461PMC
January 2013

Escape from Adaptive Conflict follows from weak functional trade-offs and mutational robustness.

Proc Natl Acad Sci U S A 2012 Sep 27;109(37):14888-93. Epub 2012 Aug 27.

Evolutionary Bioinformatics Group, Institute for Evolution and Biodiversity, University of Münster, Hüfferstraße 1, 48149 Münster, Germany.

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http://dx.doi.org/10.1073/pnas.1115620109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3443171PMC
September 2012

Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks.

Mol Ecol 2013 Feb 3;22(3):635-49. Epub 2012 Jul 3.

Institute for Evolution and Biodiversity, Evolutionary Bioinformatics, Westfaelische Wilhelms University, Muenster, Germany.

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http://dx.doi.org/10.1111/j.1365-294X.2012.05680.xDOI Listing
February 2013

Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach.

PLoS One 2012 27;7(2):e31410. Epub 2012 Feb 27.

Evolutionary Bioinformatics, Institute for Evolution and Biodiversity, Westfaelische-Wilhelms-University, Muenster, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0031410PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3288049PMC
August 2012

Proteome of Hydra nematocyst.

J Biol Chem 2012 Mar 30;287(13):9672-81. Epub 2012 Jan 30.

Department of Molecular Evolution and Genomics, Centre for Organismal Studies, University of Heidelberg, Germany.

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http://dx.doi.org/10.1074/jbc.M111.328203DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3323026PMC
March 2012

Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution.

Genome Biol Evol 2012 16;4(3):316-29. Epub 2012 Jan 16.

Evolutionary Bioinformatics Group, Institute for Evolution and Biodiversity, University of Muenster (WWU), Germany.

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http://dx.doi.org/10.1093/gbe/evs004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3318442PMC
July 2012

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species.

Proc Natl Acad Sci U S A 2011 Nov 14;108(48):19276-81. Epub 2011 Nov 14.

Institute for Evolution and Biodiversity, University of Münster, 48149 Münster, Germany.

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http://dx.doi.org/10.1073/pnas.1107680108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228437PMC
November 2011

The dynamics and evolutionary potential of domain loss and emergence.

Mol Biol Evol 2012 Feb 19;29(2):787-96. Epub 2011 Oct 19.

Evolutionary Bioinformatics Group, Institute for Evolution and Biodiversity, University of Muenster, Germany.

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http://dx.doi.org/10.1093/molbev/msr250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3258042PMC
February 2012

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing.

BMC Genomics 2011 May 11;12:227. Epub 2011 May 11.

Institute for Evolution and Biodiversity, Westfalian Wilhelms University, Hüfferstrasse 1, 48149 Münster, Germany.

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http://dx.doi.org/10.1186/1471-2164-12-227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224338PMC
May 2011

Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes.

Nucleic Acids Res 2011 Aug 5;39(14):6029-43. Epub 2011 Apr 5.

Institute for Evolution and Biodiversity, University of Münster, Hüfferstrasse 1, 48149 Münster, Germany.

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http://dx.doi.org/10.1093/nar/gkr179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3152334PMC
August 2011

The sieve element occlusion gene family in dicotyledonous plants.

Plant Signal Behav 2011 Jan 1;6(1):151-3. Epub 2011 Jan 1.

Fraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3122031PMC
http://dx.doi.org/10.4161/psb.6.1.14308DOI Listing
January 2011

Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life.

BMC Evol Biol 2011 Jan 12;11. Epub 2011 Jan 12.

Evolutionary Bioinformatics, Institute for Evolution and Biodiversity, University of Muenster, Huefferstrasse 1, D48149 Muenster, Germany.

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http://dx.doi.org/10.1186/1471-2148-11-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3033329PMC
January 2011

The evolution of protein interaction networks.

Methods Mol Biol 2011 ;696:273-89

Bioinformatics Division, School of Biological Sciences, Institute for Evolution and Biodiversity, University of Muenster, Münster, Germany.

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http://dx.doi.org/10.1007/978-1-60761-987-1_17DOI Listing
February 2011

Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants.

BMC Plant Biol 2010 Oct 8;10:219. Epub 2010 Oct 8.

Institut für Biochemie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität Münster, Hindenburgplatz 55, D-48143 Münster, Germany.

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http://dx.doi.org/10.1186/1471-2229-10-219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017817PMC
October 2010

Signals: tinkering with domains.

Sci Signal 2010 Sep 14;3(139):pe31. Epub 2010 Sep 14.

Institute for Evolution and Biodiversity, University of Münster, Hüfferstrasse 1, D48149, Münster, Germany.

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http://dx.doi.org/10.1126/scisignal.3139pe31DOI Listing
September 2010

Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model.

Biophys J 2010 Jun;98(11):2487-96

Departments of Biochemistry and of Molecular Genetics, Faculty of Medicine, and Department of Physics, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1016/j.bpj.2010.02.046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877360PMC
June 2010

How do new proteins arise?

Curr Opin Struct Biol 2010 Jun 27;20(3):390-6. Epub 2010 Mar 27.

Institute for Evolution and Biodiversity, School of Biological Sciences, University of Münster, Hüfferstrasse 1, D48149 Münster, Germany.

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http://dx.doi.org/10.1016/j.sbi.2010.02.005DOI Listing
June 2010

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Authors:
John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne Leo W Beukeboom Claude Desplan Christine G Elsik Cornelis J P Grimmelikhuijzen Paul Kitts Jeremy A Lynch Terence Murphy Deodoro C S G Oliveira Christopher D Smith Louis van de Zande Kim C Worley Evgeny M Zdobnov Maarten Aerts Stefan Albert Victor H Anaya Juan M Anzola Angel R Barchuk Susanta K Behura Agata N Bera May R Berenbaum Rinaldo C Bertossa Márcia M G Bitondi Seth R Bordenstein Peer Bork Erich Bornberg-Bauer Marleen Brunain Giuseppe Cazzamali Lesley Chaboub Joseph Chacko Dean Chavez Christopher P Childers Jeong-Hyeon Choi Michael E Clark Charles Claudianos Rochelle A Clinton Andrew G Cree Alexandre S Cristino Phat M Dang Alistair C Darby Dirk C de Graaf Bart Devreese Huyen H Dinh Rachel Edwards Navin Elango Eran Elhaik Olga Ermolaeva Jay D Evans Sylvain Foret Gerald R Fowler Daniel Gerlach Joshua D Gibson Donald G Gilbert Dan Graur Stefan Gründer Darren E Hagen Yi Han Frank Hauser Da Hultmark Henry C Hunter Gregory D D Hurst Shalini N Jhangian Huaiyang Jiang Reed M Johnson Andrew K Jones Thomas Junier Tatsuhiko Kadowaki Albert Kamping Yuri Kapustin Bobak Kechavarzi Jaebum Kim Jay Kim Boris Kiryutin Tosca Koevoets Christie L Kovar Evgenia V Kriventseva Robert Kucharski Heewook Lee Sandra L Lee Kristin Lees Lora R Lewis David W Loehlin John M Logsdon Jacqueline A Lopez Ryan J Lozado Donna Maglott Ryszard Maleszka Anoop Mayampurath Danielle J Mazur Marcella A McClure Andrew D Moore Margaret B Morgan Jean Muller Monica C Munoz-Torres Donna M Muzny Lynne V Nazareth Susanne Neupert Ngoc B Nguyen Francis M F Nunes John G Oakeshott Geoffrey O Okwuonu Bart A Pannebakker Vikas R Pejaver Zuogang Peng Stephen C Pratt Reinhard Predel Ling-Ling Pu Hilary Ranson Rhitoban Raychoudhury Andreas Rechtsteiner Justin T Reese Jeffrey G Reid Megan Riddle Hugh M Robertson Jeanne Romero-Severson Miriam Rosenberg Timothy B Sackton David B Sattelle Helge Schlüns Thomas Schmitt Martina Schneider Andreas Schüler Andrew M Schurko David M Shuker Zilá L P Simões Saurabh Sinha Zachary Smith Victor Solovyev Alexandre Souvorov Andreas Springauf Elisabeth Stafflinger Deborah E Stage Mario Stanke Yoshiaki Tanaka Arndt Telschow Carol Trent Selina Vattathil Eveline C Verhulst Lumi Viljakainen Kevin W Wanner Robert M Waterhouse James B Whitfield Timothy E Wilkes Michael Williamson Judith H Willis Florian Wolschin Stefan Wyder Takuji Yamada Soojin V Yi Courtney N Zecher Lan Zhang Richard A Gibbs

Just how versatile are domains?

BMC Evol Biol 2008 Oct 14;8:285. Epub 2008 Oct 14.

Institute for Evolution and Biodiversity, Evolutionary Bioinformatics Group, Westphalian Wilhelms-University, Münster, Germany.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-8-285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2588589PMC
October 2008

Arrangements in the modular evolution of proteins.

Trends Biochem Sci 2008 Sep 24;33(9):444-51. Epub 2008 Jul 24.

Evolutionary Bioinformatics, IEB, University of Münster, Hüfferstrasse 1, Münster, Germany.

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http://dx.doi.org/10.1016/j.tibs.2008.05.008DOI Listing
September 2008

The evolution of protein interaction networks in regulatory proteins.

Comp Funct Genomics 2004 ;5(1):79-84

School of Biological Sciences, University of Manchester, 2.205 Stopford Building, Oxford Road, Manchester M13 9PT, UK.

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http://dx.doi.org/10.1002/cfg.365DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447317PMC
June 2010

The look-ahead effect of phenotypic mutations.

Biol Direct 2008 May 14;3:18. Epub 2008 May 14.

Institute for Evolution and Biodiversity, The Westphalian Wilhelms University of Muenster, 48149 Muenster, Germany.

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http://dx.doi.org/10.1186/1745-6150-3-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2423361PMC
May 2008

Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans.

Immunobiology 2008 11;213(3-4):237-50. Epub 2008 Feb 11.

Department of Animal Evolutionary Ecology, Zoological Institute, University of Tuebingen, Auf der Morgenstelle 28, 72076 Tuebingen, Germany.

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http://dx.doi.org/10.1016/j.imbio.2007.12.004DOI Listing
July 2008

The Crohn's disease susceptibility gene DLG5 as a member of the CARD interaction network.

J Mol Med (Berl) 2008 Apr 12;86(4):423-32. Epub 2008 Mar 12.

Department of Genetic Epidemiology, Leibniz-Institute for Arteriosclerosis Research, University Münster, Münster, Germany.

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http://dx.doi.org/10.1007/s00109-008-0307-5DOI Listing
April 2008

Metabolism of halophilic archaea.

Extremophiles 2008 Mar 16;12(2):177-96. Epub 2008 Feb 16.

Department of Membrane Biochemistry, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.

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http://dx.doi.org/10.1007/s00792-008-0138-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2262144PMC
March 2008

Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).

Bioinformatics 2007 Jul 5;23(14):1834-6. Epub 2007 May 5.

Evolutionary Bioinformatics, Institute for Evolution and Biodiversity, Westfälische Wilhelms University, Schlossplatz 4, D48149 Münster, Germany.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btm240DOI Listing
July 2007

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

Plant J 2007 Apr 21;50(2):347-63. Epub 2007 Mar 21.

Zentrum für Molekularbiologie der Pflanzen, Pflanzenphysiologie, Universität Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany.

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http://dx.doi.org/10.1111/j.1365-313X.2007.03052.xDOI Listing
April 2007

Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins.

Mol Biol Evol 2007 Mar 14;24(3):670-8. Epub 2006 Dec 14.

Division of Bioinformatics, Institute for Evolution and Biodiversity, The Westphalian Wilhelms University of Münster, Münster, Germany.

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http://dx.doi.org/10.1093/molbev/msl197DOI Listing
March 2007